Wall clock time and date at job start Sat Apr 11 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38273 * 119.53957 * 2 1 4 4 C 1.38501 * 119.23783 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.81961 * 179.97438 * 4 3 2 6 6 C 1.39290 * 118.35963 * 359.97438 * 4 3 2 7 7 N 1.39901 * 120.48799 * 180.02562 * 6 4 3 8 8 C 1.34768 * 120.00621 * 310.08917 * 7 6 4 9 9 O 1.21852 * 119.99767 * 355.08728 * 8 7 6 10 10 N 1.33817 * 120.00570 * 175.08173 * 8 7 6 11 11 C 1.32931 * 120.00200 * 179.97438 * 10 8 7 12 12 C 1.41207 * 126.37981 * 359.97438 * 11 10 8 13 13 C 1.34961 * 108.24822 * 180.02562 * 12 11 10 14 14 N 1.36459 * 108.94351 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.85068 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47380 * 85.01779 * 15 14 13 17 17 H 1.07999 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00180 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99376 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00411 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46990 * 59.99686 * 20 18 16 22 22 H 1.48498 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47014 * 299.99928 * 20 18 16 24 24 N 1.37433 * 126.37803 * 179.97438 * 11 10 8 25 25 H 0.96994 * 126.36636 * 359.97438 * 24 11 10 26 26 C 1.38862 * 119.02373 * 0.27785 * 6 4 3 27 27 C 1.50699 * 119.67344 * 179.70189 * 26 6 4 28 28 N 1.31819 * 120.65868 * 359.40923 * 26 6 4 29 29 H 1.09001 * 109.47456 * 89.99872 * 1 2 3 30 30 H 1.09007 * 109.47201 * 210.00172 * 1 2 3 31 31 H 1.09001 * 109.47305 * 330.00290 * 1 2 3 32 32 H 1.07996 * 120.38114 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47272 * 278.04414 * 5 4 3 34 34 H 1.08995 * 109.46892 * 38.04986 * 5 4 3 35 35 H 1.08999 * 109.46645 * 158.04913 * 5 4 3 36 36 H 0.97005 * 119.99627 * 130.09024 * 7 6 4 37 37 H 1.08003 * 125.87698 * 0.02562 * 12 11 10 38 38 H 1.07987 * 125.52657 * 179.73130 * 13 12 11 39 39 H 1.09004 * 109.46923 * 205.02268 * 15 14 13 40 40 H 1.09003 * 109.46413 * 325.01877 * 15 14 13 41 41 H 0.97008 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.46846 * 84.33052 * 27 26 6 43 43 H 1.08997 * 109.47544 * 204.33388 * 27 26 6 44 44 H 1.09006 * 109.46995 * 324.33930 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1957 -0.0005 5 6 4.3526 2.4858 -0.0011 6 6 4.2288 -0.0335 -0.0005 7 7 5.6266 -0.0928 -0.0005 8 6 6.3318 0.6295 -0.8934 9 8 5.7524 1.2638 -1.7575 10 7 7.6684 0.6502 -0.8310 11 6 8.3639 1.3623 -1.7120 12 6 7.8345 2.1418 -2.7637 13 6 8.8631 2.7061 -3.4307 14 7 10.0346 2.3195 -2.8474 15 6 11.3783 2.7173 -3.2750 16 6 11.7318 4.0431 -2.6520 17 1 11.0265 4.5396 -2.0021 18 6 12.9558 4.6223 -2.9116 19 7 13.8145 4.0179 -3.7034 20 14 13.3944 6.2654 -2.1388 21 1 13.3631 6.1406 -0.6594 22 1 14.7563 6.6685 -2.5723 23 1 12.4128 7.2928 -2.5698 24 7 9.7323 1.4768 -1.7690 25 1 10.3702 1.0534 -1.1735 26 6 3.4742 -1.1992 -0.0058 27 6 4.1679 -2.5370 -0.0127 28 7 2.1571 -1.1472 0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6474 2.1375 -0.0004 33 1 4.4168 2.8710 -1.0188 34 1 3.8478 3.2152 0.6323 35 1 5.3564 2.3042 0.3827 36 1 6.0882 -0.6539 0.6422 37 1 6.7867 2.2652 -2.9946 38 1 8.7738 3.3549 -4.2893 39 1 12.0986 1.9631 -2.9579 40 1 11.4017 2.8084 -4.3610 41 1 14.6759 4.4252 -3.8858 42 1 4.4258 -2.8177 1.0084 43 1 3.5038 -3.2885 -0.4395 44 1 5.0762 -2.4722 -0.6120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455480081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:29 Heat of formation + Delta-G solvation = 104.010573 kcal Electronic energy + Delta-G solvation = -27108.310333 eV Core-core repulsion = 23256.427117 eV Total energy + Delta-G solvation = -3851.883216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00852 -40.65508 -38.80588 -35.38232 -34.21393 -33.90746 -32.97874 -32.11950 -31.12343 -30.58080 -28.97183 -27.56213 -26.97120 -26.03954 -23.41540 -22.27009 -21.49879 -21.32867 -20.86972 -19.72169 -18.01916 -17.10510 -16.76294 -16.71824 -16.11675 -15.06749 -15.02630 -14.91987 -14.80657 -14.60194 -14.24232 -14.02649 -13.60620 -13.32439 -13.22086 -13.10232 -12.86656 -12.78066 -12.68544 -12.38796 -12.17327 -12.05046 -12.02009 -11.71254 -11.46802 -11.40777 -11.08012 -10.59698 -10.52298 -9.99836 -9.91563 -9.63284 -9.37436 -9.11720 -9.08979 -8.95332 -8.47135 -8.06163 -6.98312 -6.53246 -4.69618 1.11555 1.36855 1.70883 1.99574 3.04143 3.04935 3.10554 3.13717 3.41471 3.76060 4.02755 4.24550 4.37883 4.50454 4.68502 4.75693 4.77746 5.10645 5.19750 5.26017 5.43805 5.48821 5.50992 5.54264 5.56706 5.63719 5.70853 5.81280 5.87721 5.91363 6.04128 6.08966 6.19410 6.30141 6.45280 6.46362 6.50912 6.60278 6.71866 7.11930 7.25354 7.34502 7.47143 7.53204 7.74163 8.07142 8.11634 8.28137 8.39557 9.01099 9.45034 10.48870 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.002254 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.392554 B =12417.433471 C =12929.138293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 C -0.166 4.166 4 C -0.031 4.031 5 C -0.102 4.102 6 C 0.120 3.880 7 N -0.667 5.667 8 C 0.685 3.315 9 O -0.613 6.613 10 N -0.711 5.711 11 C 0.487 3.513 12 C -0.333 4.333 13 C 0.163 3.837 14 N -0.343 5.343 15 C 0.255 3.745 16 C -0.559 4.559 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.886 5.886 20 Si 0.910 3.090 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.271 1.271 24 N -0.469 5.469 25 H 0.445 0.555 26 C 0.112 3.888 27 C -0.100 4.100 28 N -0.478 5.478 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.184 0.816 38 H 0.187 0.813 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.273 0.727 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 -6.184 5.222 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.029 4.029 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.158 4.158 6 C 0.022 3.978 7 N -0.315 5.315 8 C 0.385 3.615 9 O -0.494 6.494 10 N -0.477 5.477 11 C 0.234 3.766 12 C -0.366 4.366 13 C 0.018 3.982 14 N -0.128 5.128 15 C 0.139 3.861 16 C -0.598 4.598 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.737 3.263 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.191 5.191 25 H 0.292 0.708 26 C -0.029 4.029 27 C -0.158 4.158 28 N -0.189 5.189 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.243 0.757 37 H 0.201 0.799 38 H 0.204 0.796 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.639 -6.908 5.119 17.847 hybrid contribution 1.191 1.616 0.489 2.066 sum -14.448 -5.292 5.608 16.377 Atomic orbital electron populations 1.20623 0.89059 1.03000 1.02775 1.21087 0.96692 0.88183 0.96951 1.21662 0.93486 0.99125 1.04396 1.20346 0.93616 0.95280 0.94805 1.20815 0.99062 0.92634 1.03306 1.18111 0.83832 0.93200 1.02673 1.42125 1.02524 1.49727 1.37155 1.16541 0.85225 0.79191 0.80545 1.90763 1.73883 1.47215 1.37535 1.67983 1.06583 1.38830 1.34255 1.18645 0.81968 0.87263 0.88709 1.22383 1.01461 1.10263 1.02498 1.22830 0.83821 0.94799 0.96758 1.48047 1.09057 1.37270 1.18444 1.20065 0.72268 0.96691 0.97126 1.21362 1.02293 1.04491 1.31605 0.91273 1.24959 0.95474 0.98503 0.94580 1.69888 1.08316 1.39174 1.34875 0.86337 0.77829 0.82453 0.79711 1.19859 1.20789 1.19658 1.44469 1.05940 1.43161 1.25518 0.70785 1.21193 0.89174 0.94709 0.97784 1.20630 1.00101 0.92381 1.02663 1.67278 1.08387 1.29279 1.13974 0.90761 0.90805 0.91020 0.85026 0.89026 0.92479 0.91716 0.75665 0.79940 0.79570 0.93058 0.91349 0.91752 0.90703 0.90512 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.16 36.00 0.37 -0.49 16 2 C 0.11 1.38 6.78 -82.57 -0.56 0.82 16 3 C -0.17 -2.12 9.46 -39.47 -0.37 -2.49 16 4 C -0.03 -0.45 5.51 -104.13 -0.57 -1.03 16 5 C -0.10 -1.49 8.23 36.01 0.30 -1.19 16 6 C 0.12 1.82 5.90 -83.55 -0.49 1.33 16 7 N -0.67 -10.23 4.15 -14.31 -0.06 -10.29 16 8 C 0.68 12.58 6.60 -87.78 -0.58 12.00 16 9 O -0.61 -12.29 10.19 5.05 0.05 -12.23 16 10 N -0.71 -13.19 10.59 -15.79 -0.17 -13.36 16 11 C 0.49 8.94 8.07 -155.28 -1.25 7.69 16 12 C -0.33 -5.89 9.52 -39.62 -0.38 -6.27 16 13 C 0.16 2.64 11.45 -16.66 -0.19 2.45 16 14 N -0.34 -6.10 3.63 -62.24 -0.23 -6.32 16 15 C 0.25 5.15 6.19 -5.20 -0.03 5.12 16 16 C -0.56 -12.98 9.39 -34.44 -0.32 -13.31 16 17 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 18 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -22.14 13.29 55.43 0.74 -21.40 16 20 Si 0.91 18.95 29.54 -169.99 -5.02 13.93 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 N -0.47 -7.97 7.38 31.33 0.23 -7.74 16 25 H 0.45 6.66 8.96 -182.56 -1.64 5.03 16 26 C 0.11 1.58 6.80 -82.37 -0.56 1.02 16 27 C -0.10 -1.12 9.71 36.01 0.35 -0.77 16 28 N -0.48 -6.81 10.18 -5.58 -0.06 -6.87 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.09 1.47 7.09 -51.93 -0.37 1.11 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.06 6.18 -51.93 -0.32 0.74 16 36 H 0.41 5.38 8.74 -40.82 -0.36 5.02 16 37 H 0.18 3.40 5.77 -52.48 -0.30 3.09 16 38 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.87 7.64 -51.93 -0.40 0.47 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.02 371.18 -10.47 -39.49 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -7.15 Total: 12.73 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -4.40 Total: 6.47 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: 0.46 Total: -65.98 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.05 Total: -12.23 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.02 -10.47 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455480081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.502 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds