Wall clock time and date at job start Sat Apr 11 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38273 * 119.53957 * 2 1 4 4 C 1.38501 * 119.23783 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.81961 * 179.97438 * 4 3 2 6 6 C 1.39290 * 118.35963 * 359.97438 * 4 3 2 7 7 N 1.39901 * 120.48799 * 180.02562 * 6 4 3 8 8 C 1.34768 * 120.00621 * 310.08917 * 7 6 4 9 9 O 1.21852 * 119.99767 * 355.08728 * 8 7 6 10 10 N 1.33817 * 120.00570 * 175.08173 * 8 7 6 11 11 C 1.32931 * 120.00200 * 179.97438 * 10 8 7 12 12 C 1.41207 * 126.37981 * 359.97438 * 11 10 8 13 13 C 1.34961 * 108.24822 * 180.02562 * 12 11 10 14 14 N 1.36459 * 108.94351 * 359.97438 * 13 12 11 15 15 C 1.46504 * 125.85068 * 180.02562 * 14 13 12 16 16 C 1.50692 * 109.47380 * 85.01779 * 15 14 13 17 17 H 1.07999 * 120.00423 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00180 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99376 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00411 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46990 * 59.99686 * 20 18 16 22 22 H 1.48498 * 109.47297 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47014 * 299.99928 * 20 18 16 24 24 N 1.37433 * 126.37803 * 179.97438 * 11 10 8 25 25 H 0.96994 * 126.36636 * 359.97438 * 24 11 10 26 26 C 1.38862 * 119.02373 * 0.27785 * 6 4 3 27 27 C 1.50699 * 119.67344 * 179.70189 * 26 6 4 28 28 N 1.31819 * 120.65868 * 359.40923 * 26 6 4 29 29 H 1.09001 * 109.47456 * 89.99872 * 1 2 3 30 30 H 1.09007 * 109.47201 * 210.00172 * 1 2 3 31 31 H 1.09001 * 109.47305 * 330.00290 * 1 2 3 32 32 H 1.07996 * 120.38114 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47272 * 278.04414 * 5 4 3 34 34 H 1.08995 * 109.46892 * 38.04986 * 5 4 3 35 35 H 1.08999 * 109.46645 * 158.04913 * 5 4 3 36 36 H 0.97005 * 119.99627 * 130.09024 * 7 6 4 37 37 H 1.08003 * 125.87698 * 0.02562 * 12 11 10 38 38 H 1.07987 * 125.52657 * 179.73130 * 13 12 11 39 39 H 1.09004 * 109.46923 * 205.02268 * 15 14 13 40 40 H 1.09003 * 109.46413 * 325.01877 * 15 14 13 41 41 H 0.97008 * 119.99863 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.46846 * 84.33052 * 27 26 6 43 43 H 1.08997 * 109.47544 * 204.33388 * 27 26 6 44 44 H 1.09006 * 109.46995 * 324.33930 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1887 1.2030 0.0000 4 6 3.5737 1.1957 -0.0005 5 6 4.3526 2.4858 -0.0011 6 6 4.2288 -0.0335 -0.0005 7 7 5.6266 -0.0928 -0.0005 8 6 6.3318 0.6295 -0.8934 9 8 5.7524 1.2638 -1.7575 10 7 7.6684 0.6502 -0.8310 11 6 8.3639 1.3623 -1.7120 12 6 7.8345 2.1418 -2.7637 13 6 8.8631 2.7061 -3.4307 14 7 10.0346 2.3195 -2.8474 15 6 11.3783 2.7173 -3.2750 16 6 11.7318 4.0431 -2.6520 17 1 11.0265 4.5396 -2.0021 18 6 12.9558 4.6223 -2.9116 19 7 13.8145 4.0179 -3.7034 20 14 13.3944 6.2654 -2.1388 21 1 13.3631 6.1406 -0.6594 22 1 14.7563 6.6685 -2.5723 23 1 12.4128 7.2928 -2.5698 24 7 9.7323 1.4768 -1.7690 25 1 10.3702 1.0534 -1.1735 26 6 3.4742 -1.1992 -0.0058 27 6 4.1679 -2.5370 -0.0127 28 7 2.1571 -1.1472 0.0008 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6474 2.1375 -0.0004 33 1 4.4168 2.8710 -1.0188 34 1 3.8478 3.2152 0.6323 35 1 5.3564 2.3042 0.3827 36 1 6.0882 -0.6539 0.6422 37 1 6.7867 2.2652 -2.9946 38 1 8.7738 3.3549 -4.2893 39 1 12.0986 1.9631 -2.9579 40 1 11.4017 2.8084 -4.3610 41 1 14.6759 4.4252 -3.8858 42 1 4.4258 -2.8177 1.0084 43 1 3.5038 -3.2885 -0.4395 44 1 5.0762 -2.4722 -0.6120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455480081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:28 Heat of formation + Delta-G solvation = 86.526319 kcal Electronic energy + Delta-G solvation = -27109.068507 eV Core-core repulsion = 23256.427117 eV Total energy + Delta-G solvation = -3852.641390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34621 -41.82394 -40.08750 -36.62411 -35.74188 -35.03585 -34.52067 -33.23683 -32.49884 -32.08021 -29.86717 -28.72393 -28.42218 -27.16635 -24.99382 -23.58582 -22.72758 -22.50507 -22.07083 -20.98797 -19.33651 -18.81282 -18.11886 -17.91219 -17.44109 -16.65197 -16.35173 -16.29826 -15.83207 -15.67439 -15.65812 -15.40867 -14.63590 -14.57998 -14.34869 -14.26836 -14.12258 -14.05620 -13.80849 -13.66000 -13.49417 -13.09881 -13.06746 -12.88875 -12.72767 -12.62237 -12.50672 -12.30809 -12.11429 -11.32835 -11.29622 -11.10659 -10.76580 -10.50613 -10.44907 -10.16379 -9.91597 -9.19237 -8.54207 -8.21295 -6.55271 0.04584 0.27510 0.35904 0.60341 1.39879 1.42704 1.49431 1.67021 2.17591 2.31791 2.71920 2.92828 3.00291 3.11370 3.34646 3.67968 3.76369 3.92169 4.12113 4.21415 4.37204 4.44248 4.48394 4.59112 4.62857 4.70502 4.71907 4.73881 4.76717 4.86997 4.87095 4.96787 5.01151 5.16346 5.20106 5.26203 5.28504 5.35456 5.51499 5.59014 5.71370 5.86842 6.01194 6.12281 6.32776 6.58222 6.82538 6.89565 7.05337 7.18401 8.06087 8.66639 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.026881 B = 0.002254 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.392554 B =12417.433471 C =12929.138293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.105 3.895 3 C -0.167 4.167 4 C -0.050 4.050 5 C -0.091 4.091 6 C 0.093 3.907 7 N -0.656 5.656 8 C 0.678 3.322 9 O -0.635 6.635 10 N -0.719 5.719 11 C 0.474 3.526 12 C -0.343 4.343 13 C 0.177 3.823 14 N -0.349 5.349 15 C 0.268 3.732 16 C -0.565 4.565 17 H 0.060 0.940 18 C 0.030 3.970 19 N -0.913 5.913 20 Si 0.963 3.037 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.268 1.268 24 N -0.465 5.465 25 H 0.452 0.548 26 C 0.105 3.895 27 C -0.096 4.096 28 N -0.494 5.494 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.040 0.960 36 H 0.415 0.585 37 H 0.175 0.825 38 H 0.222 0.778 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.274 0.726 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 -5.782 5.617 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.033 4.033 3 C -0.187 4.187 4 C -0.059 4.059 5 C -0.147 4.147 6 C -0.004 4.004 7 N -0.305 5.305 8 C 0.378 3.622 9 O -0.517 6.517 10 N -0.484 5.484 11 C 0.221 3.779 12 C -0.375 4.375 13 C 0.032 3.968 14 N -0.134 5.134 15 C 0.151 3.849 16 C -0.603 4.603 17 H 0.078 0.922 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.788 3.212 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.193 1.193 24 N -0.188 5.188 25 H 0.301 0.699 26 C -0.035 4.035 27 C -0.154 4.154 28 N -0.206 5.206 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.177 0.823 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.253 0.747 37 H 0.192 0.808 38 H 0.238 0.762 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.080 -6.531 5.540 19.107 hybrid contribution 1.514 1.456 0.392 2.137 sum -15.566 -5.074 5.932 17.414 Atomic orbital electron populations 1.20734 0.86204 1.04421 1.03806 1.21776 0.98608 0.87742 0.95175 1.21963 0.92699 1.00514 1.03531 1.20575 0.94797 0.95096 0.95469 1.20661 0.98165 0.93413 1.02493 1.18336 0.83585 0.94033 1.04491 1.41936 1.02780 1.49133 1.36603 1.16730 0.85225 0.79379 0.80841 1.90740 1.74170 1.48240 1.38568 1.68017 1.06803 1.39109 1.34486 1.18841 0.82419 0.87580 0.89073 1.22294 1.01389 1.10918 1.02910 1.23341 0.82529 0.94010 0.96903 1.47871 1.08838 1.37772 1.18930 1.19731 0.73048 0.95218 0.96916 1.21576 1.02053 1.05522 1.31183 0.92185 1.25598 0.95602 1.01072 0.95022 1.69956 1.08657 1.40365 1.36055 0.85520 0.77595 0.79463 0.78656 1.20124 1.20581 1.19286 1.44435 1.05718 1.43103 1.25528 0.69943 1.21571 0.89436 0.95432 0.97091 1.20661 0.99630 0.91200 1.03870 1.67395 1.08325 1.30160 1.14696 0.89744 0.90466 0.88572 0.82273 0.90841 0.89974 0.94050 0.74745 0.80827 0.76185 0.93855 0.91104 0.91731 0.88683 0.89902 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.41 10.16 71.23 0.72 -0.68 16 2 C 0.10 2.47 6.78 42.56 0.29 2.76 16 3 C -0.17 -3.98 9.46 22.34 0.21 -3.77 16 4 C -0.05 -1.45 5.51 -19.55 -0.11 -1.56 16 5 C -0.09 -2.66 8.23 71.24 0.59 -2.08 16 6 C 0.09 2.83 5.90 38.26 0.23 3.05 16 7 N -0.66 -20.39 4.15 -317.35 -1.32 -21.70 16 8 C 0.68 25.37 6.60 179.36 1.18 26.55 16 9 O -0.63 -25.99 10.19 -4.84 -0.05 -26.04 16 10 N -0.72 -26.98 10.59 -322.56 -3.42 -30.40 16 11 C 0.47 17.46 8.07 133.95 1.08 18.54 16 12 C -0.34 -12.07 9.52 22.25 0.21 -11.86 16 13 C 0.18 5.50 11.45 83.22 0.95 6.46 16 14 N -0.35 -12.14 3.63 -350.84 -1.28 -13.41 16 15 C 0.27 10.66 6.19 85.63 0.53 11.19 16 16 C -0.57 -25.83 9.39 25.60 0.24 -25.59 16 17 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 18 C 0.03 1.39 5.46 84.66 0.46 1.85 16 19 N -0.91 -45.20 13.29 21.45 0.28 -44.91 16 20 Si 0.96 38.25 29.54 68.60 2.03 40.27 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 N -0.46 -15.70 7.38 -54.78 -0.40 -16.10 16 25 H 0.45 13.50 8.96 -213.29 -1.91 11.59 16 26 C 0.10 2.91 6.80 42.71 0.29 3.20 16 27 C -0.10 -2.07 9.71 71.24 0.69 -1.38 16 28 N -0.49 -13.50 10.18 -171.58 -1.75 -15.25 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.07 2.41 7.09 -2.39 -0.02 2.39 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.38 6.18 -2.39 -0.01 1.37 16 36 H 0.42 11.08 8.74 -92.70 -0.81 10.27 16 37 H 0.17 6.55 5.77 -2.91 -0.02 6.53 16 38 H 0.22 5.12 8.06 -2.92 -0.02 5.10 16 39 H 0.04 1.80 8.14 -2.38 -0.02 1.79 16 40 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.27 12.96 8.31 -92.70 -0.77 12.19 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.07 1.58 7.64 -2.38 -0.02 1.56 16 Total: -1.00 -61.71 371.18 0.01 -61.70 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.66 Total: 39.15 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 7.57 Total: 26.70 kcal Atomic # 7 Polarization: -133.90 SS G_CDS: -7.87 Total: -141.77 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Total: -61.71 0.01 -61.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455480081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.226 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds