Wall clock time and date at job start Sat Apr 11 2020 02:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31829 * 119.65908 * 2 1 4 4 C 1.32356 * 121.75585 * 179.97438 * 3 2 1 5 5 N 1.39431 * 119.56724 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00269 * 354.93102 * 5 4 3 7 7 O 1.21582 * 119.99495 * 5.09552 * 6 5 4 8 8 N 1.34769 * 120.00253 * 185.09389 * 6 5 4 9 9 C 1.46500 * 120.00021 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47306 * 324.99364 * 9 8 6 11 11 C 1.52996 * 109.47338 * 85.00112 * 9 8 6 12 12 C 1.50704 * 109.47082 * 205.00036 * 9 8 6 13 13 H 1.08007 * 120.00017 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99955 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00283 * 359.97438 * 14 12 9 16 16 Si 1.86810 * 119.99964 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46768 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46988 * 119.99652 * 16 14 12 19 19 H 1.48493 * 109.47167 * 239.99881 * 16 14 12 20 20 C 1.39102 * 120.86345 * 0.02562 * 4 3 2 21 21 C 1.38163 * 119.21633 * 359.72008 * 20 4 3 22 22 C 1.39128 * 119.65595 * 179.97438 * 2 1 3 23 23 C 1.48507 * 120.46299 * 0.02562 * 22 2 1 24 24 C 1.40823 * 126.21639 * 310.03312 * 23 22 2 25 25 N 1.30684 * 108.11125 * 179.97438 * 24 23 22 26 26 N 1.40011 * 108.51691 * 0.02562 * 25 24 23 27 27 C 1.46501 * 125.89926 * 180.02562 * 26 25 24 28 28 C 1.34888 * 108.20016 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.46647 * 270.02093 * 1 2 3 30 30 H 1.09002 * 109.46989 * 30.01483 * 1 2 3 31 31 H 1.08996 * 109.47154 * 150.01699 * 1 2 3 32 32 H 0.96999 * 119.99743 * 174.93182 * 5 4 3 33 33 H 0.97001 * 119.99974 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47101 * 59.99647 * 11 9 8 35 35 H 1.09005 * 109.47309 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.46737 * 300.00011 * 11 9 8 37 37 H 0.97002 * 120.00124 * 180.02562 * 15 14 12 38 38 H 1.08001 * 120.38937 * 180.02562 * 20 4 3 39 39 H 1.08005 * 120.79864 * 180.30040 * 21 20 4 40 40 H 1.08008 * 125.94664 * 359.71214 * 24 23 22 41 41 H 1.08996 * 109.47295 * 269.95876 * 27 26 25 42 42 H 1.09006 * 109.47087 * 29.95500 * 27 26 25 43 43 H 1.09000 * 109.47399 * 149.95389 * 27 26 25 44 44 H 1.07999 * 126.19764 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1456 0.0000 4 6 3.4820 1.1940 0.0005 5 7 4.1252 2.4311 -0.0001 6 6 3.4046 3.5653 -0.1042 7 8 2.1898 3.5157 -0.1044 8 7 4.0306 4.7542 -0.2082 9 6 3.2473 5.9871 -0.3209 10 1 2.3437 5.7920 -0.8984 11 6 2.8635 6.4771 1.0768 12 6 4.0689 7.0426 -1.0151 13 1 5.0742 6.8177 -1.3396 14 6 3.5376 8.2957 -1.2352 15 7 2.3136 8.5698 -0.8397 16 14 4.5563 9.6043 -2.0951 17 1 5.8902 9.0481 -2.4365 18 1 3.8651 10.0323 -3.3378 19 1 4.7236 10.7728 -1.1942 20 6 4.2388 0.0269 0.0005 21 6 3.5940 -1.1950 0.0059 22 6 2.1954 -1.2090 0.0005 23 6 1.4556 -2.4967 0.0005 24 6 0.4070 -2.8538 0.8701 25 7 0.0145 -4.0608 0.5589 26 7 0.7909 -4.5185 -0.5125 27 6 0.6705 -5.8251 -1.1641 28 6 1.6680 -3.5482 -0.8419 29 1 -0.3632 0.0004 1.0276 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 5.0913 2.4754 0.0745 33 1 4.9998 4.7938 -0.2077 34 1 3.7671 6.6722 1.6542 35 1 2.2810 7.3946 0.9930 36 1 2.2692 5.7136 1.5789 37 1 1.9397 9.4513 -0.9948 38 1 5.3178 0.0753 0.0014 39 1 4.1563 -2.1171 0.0109 40 1 0.0011 -2.2390 1.6599 41 1 1.3226 -6.5417 -0.6647 42 1 -0.3621 -6.1686 -1.1015 43 1 0.9613 -5.7374 -2.2109 44 1 2.4050 -3.5953 -1.6300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455720140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:32 Heat of formation + Delta-G solvation = 99.196884 kcal Electronic energy + Delta-G solvation = -26828.515119 eV Core-core repulsion = 22976.423166 eV Total energy + Delta-G solvation = -3852.091953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.48671 -40.37600 -38.80154 -35.41532 -34.36835 -33.59395 -32.81459 -32.40523 -31.54612 -29.65291 -28.67418 -27.43884 -26.44308 -25.21028 -23.55471 -22.20366 -21.44079 -21.08435 -20.50684 -19.70703 -18.16590 -17.42145 -17.34589 -16.17607 -15.75337 -15.54777 -15.26581 -15.10846 -14.89655 -14.53653 -14.07875 -13.82340 -13.66312 -13.37232 -13.21975 -13.10078 -12.99371 -12.79774 -12.44779 -12.30913 -12.11294 -11.93510 -11.69035 -11.07031 -11.04474 -10.93101 -10.72082 -10.31761 -10.22236 -10.18029 -9.72520 -9.68364 -9.55008 -8.99140 -8.91825 -8.59962 -8.50963 -7.90680 -7.57772 -6.09275 -4.18142 1.12037 1.43055 1.70488 2.22795 2.63026 3.04451 3.25548 3.33364 3.36095 3.76355 4.19842 4.25483 4.33556 4.47469 4.58305 4.73975 4.76652 4.83584 4.97250 5.00407 5.07615 5.12949 5.23177 5.31975 5.46482 5.58671 5.73384 5.77624 5.78805 6.02769 6.16248 6.30894 6.42774 6.52618 6.69554 6.82680 6.99629 7.04350 7.16152 7.25614 7.43747 7.54518 7.65627 7.83505 7.99848 8.19880 8.38731 8.79075 8.94674 9.36739 9.52374 10.96791 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002108 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.365213 B =13281.329212 C =13588.136431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.177 3.823 3 N -0.467 5.467 4 C 0.394 3.606 5 N -0.677 5.677 6 C 0.681 3.319 7 O -0.534 6.534 8 N -0.723 5.723 9 C 0.281 3.719 10 H 0.049 0.951 11 C -0.148 4.148 12 C -0.531 4.531 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.882 5.882 16 Si 0.902 3.098 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.224 4.224 21 C -0.037 4.037 22 C -0.108 4.108 23 C -0.178 4.178 24 C 0.065 3.935 25 N -0.299 5.299 26 N -0.378 5.378 27 C 0.102 3.898 28 C 0.063 3.937 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.408 0.592 33 H 0.384 0.616 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.185 0.815 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.584 -26.917 0.494 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 N -0.181 5.181 4 C 0.161 3.839 5 N -0.325 5.325 6 C 0.380 3.620 7 O -0.406 6.406 8 N -0.376 5.376 9 C 0.180 3.820 10 H 0.067 0.933 11 C -0.207 4.207 12 C -0.570 4.570 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.730 3.270 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.248 4.248 21 C -0.063 4.063 22 C -0.114 4.114 23 C -0.190 4.190 24 C -0.121 4.121 25 N -0.119 5.119 26 N -0.159 5.159 27 C -0.039 4.039 28 C -0.083 4.083 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.243 0.757 33 H 0.215 0.785 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.202 0.798 41 H 0.092 0.908 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.010 -26.925 0.657 26.933 hybrid contribution 2.763 0.710 -0.617 2.919 sum 2.773 -26.215 0.040 26.361 Atomic orbital electron populations 1.20754 0.88974 1.03370 1.02901 1.21238 0.96764 0.86344 0.91992 1.67597 1.07061 1.28008 1.15450 1.18260 0.88821 0.84634 0.92189 1.43086 1.10184 1.03617 1.75568 1.16285 0.86095 0.80237 0.79396 1.90999 1.10753 1.84753 1.54084 1.45888 1.09673 1.05606 1.76392 1.18657 0.91726 0.77908 0.93757 0.93286 1.22100 0.99371 1.01810 0.97377 1.21247 1.00701 0.96348 1.38712 0.92073 1.24889 0.95094 0.98300 0.95524 1.69920 1.14251 1.21945 1.45872 0.86387 0.80082 0.81324 0.79227 1.19797 1.20906 1.20911 1.21277 1.00556 0.91542 1.11443 1.21219 0.93073 0.97174 0.94859 1.18638 0.92678 0.91568 1.08487 1.18595 1.03252 0.95250 1.01936 1.24042 0.95674 0.92975 0.99456 1.77269 1.17587 1.13416 1.03663 1.48359 1.27229 1.13736 1.26608 1.21852 1.04453 0.80571 0.97032 1.22540 0.96200 0.88938 1.00671 0.90485 0.90124 0.90866 0.75671 0.78454 0.95609 0.89153 0.96521 0.92637 0.84959 0.85085 0.79818 0.90780 0.89265 0.89469 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 8.94 36.01 0.32 -1.00 16 2 C 0.18 2.64 6.81 -82.26 -0.56 2.08 16 3 N -0.47 -8.58 7.77 -8.34 -0.06 -8.64 16 4 C 0.39 6.31 7.42 -154.65 -1.15 5.16 16 5 N -0.68 -10.85 5.40 -15.79 -0.09 -10.93 16 6 C 0.68 14.44 8.49 -86.92 -0.74 13.71 16 7 O -0.53 -13.70 14.26 5.29 0.08 -13.62 16 8 N -0.72 -15.34 5.07 -59.82 -0.30 -15.65 16 9 C 0.28 7.29 2.56 -69.08 -0.18 7.11 16 10 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 11 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 12 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 13 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 14 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 15 N -0.88 -25.09 11.32 55.43 0.63 -24.46 16 16 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.22 -2.62 9.92 -39.29 -0.39 -3.01 16 21 C -0.04 -0.40 9.85 -39.00 -0.38 -0.78 16 22 C -0.11 -1.31 5.77 -104.72 -0.60 -1.91 16 23 C -0.18 -1.86 4.73 -105.35 -0.50 -2.36 16 24 C 0.07 0.69 10.26 -17.06 -0.18 0.51 16 25 N -0.30 -3.31 12.54 30.80 0.39 -2.93 16 26 N -0.38 -3.27 4.00 -67.89 -0.27 -3.54 16 27 C 0.10 0.44 11.46 59.85 0.69 1.12 16 28 C 0.06 0.53 11.37 -16.87 -0.19 0.34 16 29 H 0.08 0.87 8.00 -51.93 -0.42 0.46 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 0.82 6.48 -51.93 -0.34 0.49 16 32 H 0.41 4.74 8.71 -40.82 -0.36 4.38 16 33 H 0.38 6.86 8.56 -40.82 -0.35 6.51 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.18 1.63 7.77 -52.48 -0.41 1.23 16 41 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -36.30 374.34 -8.84 -45.15 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.92 Total: 8.51 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -3.91 Total: 4.75 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: 0.29 Total: -66.15 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.30 -8.84 -45.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455720140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.344 kcal (2) G-P(sol) polarization free energy of solvation -36.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds