Wall clock time and date at job start Sat Apr 11 2020 02:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31829 * 119.65908 * 2 1 4 4 C 1.32356 * 121.75585 * 179.97438 * 3 2 1 5 5 N 1.39431 * 119.56724 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00269 * 354.93102 * 5 4 3 7 7 O 1.21582 * 119.99495 * 5.09552 * 6 5 4 8 8 N 1.34769 * 120.00253 * 185.09389 * 6 5 4 9 9 C 1.46500 * 120.00021 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.47306 * 324.99364 * 9 8 6 11 11 C 1.52996 * 109.47338 * 85.00112 * 9 8 6 12 12 C 1.50704 * 109.47082 * 205.00036 * 9 8 6 13 13 H 1.08007 * 120.00017 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99955 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00283 * 359.97438 * 14 12 9 16 16 Si 1.86810 * 119.99964 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46768 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46988 * 119.99652 * 16 14 12 19 19 H 1.48493 * 109.47167 * 239.99881 * 16 14 12 20 20 C 1.39102 * 120.86345 * 0.02562 * 4 3 2 21 21 C 1.38163 * 119.21633 * 359.72008 * 20 4 3 22 22 C 1.39128 * 119.65595 * 179.97438 * 2 1 3 23 23 C 1.48507 * 120.46299 * 0.02562 * 22 2 1 24 24 C 1.40823 * 126.21639 * 310.03312 * 23 22 2 25 25 N 1.30684 * 108.11125 * 179.97438 * 24 23 22 26 26 N 1.40011 * 108.51691 * 0.02562 * 25 24 23 27 27 C 1.46501 * 125.89926 * 180.02562 * 26 25 24 28 28 C 1.34888 * 108.20016 * 359.97438 * 26 25 24 29 29 H 1.08995 * 109.46647 * 270.02093 * 1 2 3 30 30 H 1.09002 * 109.46989 * 30.01483 * 1 2 3 31 31 H 1.08996 * 109.47154 * 150.01699 * 1 2 3 32 32 H 0.96999 * 119.99743 * 174.93182 * 5 4 3 33 33 H 0.97001 * 119.99974 * 359.97438 * 8 6 5 34 34 H 1.08999 * 109.47101 * 59.99647 * 11 9 8 35 35 H 1.09005 * 109.47309 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.46737 * 300.00011 * 11 9 8 37 37 H 0.97002 * 120.00124 * 180.02562 * 15 14 12 38 38 H 1.08001 * 120.38937 * 180.02562 * 20 4 3 39 39 H 1.08005 * 120.79864 * 180.30040 * 21 20 4 40 40 H 1.08008 * 125.94664 * 359.71214 * 24 23 22 41 41 H 1.08996 * 109.47295 * 269.95876 * 27 26 25 42 42 H 1.09006 * 109.47087 * 29.95500 * 27 26 25 43 43 H 1.09000 * 109.47399 * 149.95389 * 27 26 25 44 44 H 1.07999 * 126.19764 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1456 0.0000 4 6 3.4820 1.1940 0.0005 5 7 4.1252 2.4311 -0.0001 6 6 3.4046 3.5653 -0.1042 7 8 2.1898 3.5157 -0.1044 8 7 4.0306 4.7542 -0.2082 9 6 3.2473 5.9871 -0.3209 10 1 2.3437 5.7920 -0.8984 11 6 2.8635 6.4771 1.0768 12 6 4.0689 7.0426 -1.0151 13 1 5.0742 6.8177 -1.3396 14 6 3.5376 8.2957 -1.2352 15 7 2.3136 8.5698 -0.8397 16 14 4.5563 9.6043 -2.0951 17 1 5.8902 9.0481 -2.4365 18 1 3.8651 10.0323 -3.3378 19 1 4.7236 10.7728 -1.1942 20 6 4.2388 0.0269 0.0005 21 6 3.5940 -1.1950 0.0059 22 6 2.1954 -1.2090 0.0005 23 6 1.4556 -2.4967 0.0005 24 6 0.4070 -2.8538 0.8701 25 7 0.0145 -4.0608 0.5589 26 7 0.7909 -4.5185 -0.5125 27 6 0.6705 -5.8251 -1.1641 28 6 1.6680 -3.5482 -0.8419 29 1 -0.3632 0.0004 1.0276 30 1 -0.3633 0.8899 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 5.0913 2.4754 0.0745 33 1 4.9998 4.7938 -0.2077 34 1 3.7671 6.6722 1.6542 35 1 2.2810 7.3946 0.9930 36 1 2.2692 5.7136 1.5789 37 1 1.9397 9.4513 -0.9948 38 1 5.3178 0.0753 0.0014 39 1 4.1563 -2.1171 0.0109 40 1 0.0011 -2.2390 1.6599 41 1 1.3226 -6.5417 -0.6647 42 1 -0.3621 -6.1686 -1.1015 43 1 0.9613 -5.7374 -2.2109 44 1 2.4050 -3.5953 -1.6300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455720140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:31 Heat of formation + Delta-G solvation = 73.992891 kcal Electronic energy + Delta-G solvation = -26829.608046 eV Core-core repulsion = 22976.423166 eV Total energy + Delta-G solvation = -3853.184880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.24755 -41.57260 -40.22166 -37.01433 -35.96402 -34.52244 -34.13454 -33.77433 -32.66627 -30.74602 -30.28353 -28.28957 -27.35448 -27.19504 -24.70227 -23.25613 -22.95974 -21.90512 -21.43361 -21.30447 -19.78365 -18.64899 -18.12400 -17.87042 -16.95253 -16.85038 -16.46162 -16.23962 -15.99950 -15.71293 -15.37229 -15.05150 -15.00402 -14.64222 -14.35501 -13.93640 -13.87157 -13.80030 -13.64637 -13.50049 -13.31626 -12.98005 -12.95825 -12.91083 -12.85149 -12.70843 -12.26451 -12.09583 -11.81858 -11.40510 -11.28154 -11.06987 -10.64443 -10.59407 -10.36814 -10.02583 -9.79218 -9.53055 -8.62974 -8.15659 -6.33052 0.12677 0.50228 0.99286 1.45977 1.46246 1.58519 1.68428 1.72115 1.82399 2.32501 2.43211 3.03760 3.14560 3.24017 3.62871 3.70793 3.96752 4.02508 4.10519 4.23704 4.33452 4.43534 4.49934 4.70058 4.73648 4.74929 4.75822 4.76205 4.86673 4.93211 4.95100 5.04505 5.12387 5.19398 5.37104 5.43682 5.45495 5.61480 5.64342 5.69599 5.84974 5.99722 6.11436 6.13193 6.19042 6.73107 6.75339 7.09063 7.35295 7.50084 7.83023 8.91226 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031582 B = 0.002108 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.365213 B =13281.329212 C =13588.136431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.143 3.857 3 N -0.522 5.522 4 C 0.352 3.648 5 N -0.660 5.660 6 C 0.681 3.319 7 O -0.587 6.587 8 N -0.717 5.717 9 C 0.290 3.710 10 H -0.005 1.005 11 C -0.133 4.133 12 C -0.543 4.543 13 H 0.076 0.924 14 C 0.011 3.989 15 N -0.918 5.918 16 Si 0.976 3.024 17 H -0.258 1.258 18 H -0.285 1.285 19 H -0.279 1.279 20 C -0.199 4.199 21 C -0.033 4.033 22 C -0.087 4.087 23 C -0.205 4.205 24 C 0.057 3.943 25 N -0.331 5.331 26 N -0.376 5.376 27 C 0.092 3.908 28 C 0.082 3.918 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.429 0.571 33 H 0.403 0.597 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.007 0.993 37 H 0.265 0.735 38 H 0.173 0.827 39 H 0.174 0.826 40 H 0.187 0.813 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.861 -29.575 -0.421 30.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.004 3.996 3 N -0.237 5.237 4 C 0.121 3.879 5 N -0.311 5.311 6 C 0.381 3.619 7 O -0.463 6.463 8 N -0.371 5.371 9 C 0.186 3.814 10 H 0.013 0.987 11 C -0.192 4.192 12 C -0.581 4.581 13 H 0.094 0.906 14 C -0.189 4.189 15 N -0.557 5.557 16 Si 0.801 3.199 17 H -0.182 1.182 18 H -0.211 1.211 19 H -0.204 1.204 20 C -0.222 4.222 21 C -0.058 4.058 22 C -0.092 4.092 23 C -0.217 4.217 24 C -0.129 4.129 25 N -0.152 5.152 26 N -0.157 5.157 27 C -0.048 4.048 28 C -0.066 4.066 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.269 0.731 33 H 0.238 0.762 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.190 0.810 39 H 0.192 0.808 40 H 0.204 0.796 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.134 0.866 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.338 -29.677 -0.245 29.865 hybrid contribution 1.683 1.283 -0.350 2.145 sum 5.020 -28.393 -0.595 28.840 Atomic orbital electron populations 1.20692 0.88868 1.02483 1.03140 1.21446 0.97240 0.86825 0.94041 1.67371 1.09084 1.30413 1.16856 1.18647 0.88843 0.85395 0.95059 1.42633 1.10895 1.02348 1.75206 1.16421 0.85648 0.81186 0.78687 1.90967 1.13325 1.85762 1.56222 1.45456 1.10260 1.04657 1.76730 1.18213 0.90450 0.79700 0.93014 0.98703 1.21910 0.99467 1.00329 0.97473 1.21555 1.01242 0.96554 1.38739 0.90619 1.25850 0.96158 1.00730 0.96154 1.70079 1.16078 1.22547 1.46979 0.85236 0.78825 0.78192 0.77668 1.18174 1.21114 1.20430 1.21641 1.02224 0.89996 1.08329 1.21710 0.92492 0.98359 0.93266 1.18774 0.93614 0.91069 1.05732 1.18571 1.04199 0.95369 1.03570 1.24166 0.95793 0.93104 0.99813 1.77229 1.18930 1.13817 1.05226 1.48745 1.26384 1.14875 1.25681 1.22231 1.05051 0.78998 0.98496 1.23025 0.95770 0.87729 1.00092 0.89799 0.93069 0.89407 0.73121 0.76247 0.93978 0.91447 0.97363 0.92577 0.80982 0.80824 0.79623 0.89229 0.89325 0.86641 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.61 8.94 71.24 0.64 -1.98 16 2 C 0.14 4.38 6.81 42.77 0.29 4.67 16 3 N -0.52 -19.96 7.77 -180.31 -1.40 -21.36 16 4 C 0.35 11.12 7.42 132.92 0.99 12.10 16 5 N -0.66 -20.94 5.40 -322.12 -1.74 -22.68 16 6 C 0.68 29.86 8.49 179.06 1.52 31.38 16 7 O -0.59 -32.06 14.26 -3.97 -0.06 -32.12 16 8 N -0.72 -30.96 5.07 -461.43 -2.34 -33.30 16 9 C 0.29 15.60 2.56 44.25 0.11 15.72 16 10 H 0.00 -0.32 7.58 -2.39 -0.02 -0.34 16 11 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 12 C -0.54 -29.12 8.73 25.60 0.22 -28.90 16 13 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 14 C 0.01 0.59 5.30 84.65 0.45 1.04 16 15 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 16 Si 0.98 42.40 29.54 68.60 2.03 44.43 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 18 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 C -0.20 -4.01 9.92 22.46 0.22 -3.79 16 21 C -0.03 -0.57 9.85 22.65 0.22 -0.35 16 22 C -0.09 -1.95 5.77 -19.93 -0.11 -2.06 16 23 C -0.20 -3.86 4.73 -20.33 -0.10 -3.96 16 24 C 0.06 1.16 10.26 85.50 0.88 2.03 16 25 N -0.33 -6.93 12.54 -56.46 -0.71 -7.63 16 26 N -0.38 -5.46 4.00 -368.69 -1.48 -6.94 16 27 C 0.09 0.49 11.46 127.77 1.46 1.96 16 28 C 0.08 1.09 11.37 83.80 0.95 2.05 16 29 H 0.08 2.08 8.00 -2.39 -0.02 2.06 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.06 6.48 -2.39 -0.02 2.05 16 32 H 0.43 9.21 8.71 -92.71 -0.81 8.40 16 33 H 0.40 14.09 8.56 -92.71 -0.79 13.29 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.19 3.39 7.77 -2.91 -0.02 3.37 16 41 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.21 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -84.84 374.34 2.41 -82.42 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.55 Total: 27.12 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 8.42 Total: 23.56 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -7.42 Total: -145.42 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.06 Total: -32.12 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -84.84 2.41 -82.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455720140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.416 kcal (2) G-P(sol) polarization free energy of solvation -84.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds