Wall clock time and date at job start Sat Apr 11 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31829 * 119.65908 * 2 1 4 4 C 1.32356 * 121.75585 * 179.97438 * 3 2 1 5 5 N 1.39431 * 119.56724 * 179.97438 * 4 3 2 6 6 C 1.34778 * 120.00269 * 354.93102 * 5 4 3 7 7 O 1.21582 * 119.99495 * 5.09552 * 6 5 4 8 8 N 1.34769 * 120.00253 * 185.09389 * 6 5 4 9 9 C 1.46500 * 120.00021 * 180.02562 * 8 6 5 10 10 C 1.53006 * 109.46962 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.46968 * 179.97438 * 10 9 8 12 12 H 1.08008 * 120.00084 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99958 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99988 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99968 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47226 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47390 * 120.00049 * 15 13 11 18 18 H 1.48505 * 109.47022 * 240.00172 * 15 13 11 19 19 C 1.39102 * 120.86345 * 0.02562 * 4 3 2 20 20 C 1.38163 * 119.21633 * 359.72008 * 19 4 3 21 21 C 1.39128 * 119.65595 * 179.97438 * 2 1 3 22 22 C 1.48507 * 120.46299 * 0.02562 * 21 2 1 23 23 C 1.40823 * 126.21639 * 310.03312 * 22 21 2 24 24 N 1.30684 * 108.11125 * 179.97438 * 23 22 21 25 25 N 1.40011 * 108.51691 * 0.02562 * 24 23 22 26 26 C 1.46501 * 125.89926 * 180.02562 * 25 24 23 27 27 C 1.34888 * 108.20016 * 359.97438 * 25 24 23 28 28 H 1.08995 * 109.46647 * 270.02093 * 1 2 3 29 29 H 1.09002 * 109.46989 * 30.01483 * 1 2 3 30 30 H 1.08996 * 109.47154 * 150.01699 * 1 2 3 31 31 H 0.96999 * 119.99743 * 174.93182 * 5 4 3 32 32 H 0.97001 * 119.99974 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.47119 * 299.99597 * 9 8 6 34 34 H 1.08997 * 109.47288 * 59.99709 * 9 8 6 35 35 H 1.08999 * 109.46896 * 299.99761 * 10 9 8 36 36 H 1.08997 * 109.47334 * 59.99764 * 10 9 8 37 37 H 0.96996 * 119.99929 * 179.97438 * 14 13 11 38 38 H 1.08001 * 120.38937 * 180.02562 * 19 4 3 39 39 H 1.08005 * 120.79864 * 180.30040 * 20 19 4 40 40 H 1.08008 * 125.94664 * 359.71214 * 23 22 21 41 41 H 1.08996 * 109.47295 * 269.95876 * 26 25 24 42 42 H 1.09006 * 109.47087 * 29.95500 * 26 25 24 43 43 H 1.09000 * 109.47399 * 149.95389 * 26 25 24 44 44 H 1.07999 * 126.19764 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1456 0.0000 4 6 3.4820 1.1940 0.0005 5 7 4.1252 2.4311 -0.0001 6 6 3.4046 3.5653 -0.1042 7 8 2.1898 3.5157 -0.1044 8 7 4.0306 4.7542 -0.2082 9 6 3.2473 5.9871 -0.3209 10 6 4.1936 7.1850 -0.4239 11 6 3.3878 8.4531 -0.5404 12 1 2.3086 8.4092 -0.5405 13 6 4.0282 9.6696 -0.6458 14 7 5.3423 9.7233 -0.6442 15 14 3.0294 11.2416 -0.7896 16 1 1.5817 10.9120 -0.7669 17 1 3.3513 12.1385 0.3493 18 1 3.3613 11.9239 -2.0662 19 6 4.2388 0.0269 0.0005 20 6 3.5940 -1.1950 0.0059 21 6 2.1954 -1.2090 0.0005 22 6 1.4556 -2.4967 0.0005 23 6 0.4070 -2.8538 0.8701 24 7 0.0145 -4.0608 0.5589 25 7 0.7909 -4.5185 -0.5125 26 6 0.6705 -5.8251 -1.1641 27 6 1.6680 -3.5482 -0.8419 28 1 -0.3632 0.0004 1.0276 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3633 -0.8901 -0.5135 31 1 5.0913 2.4754 0.0745 32 1 4.9998 4.7938 -0.2077 33 1 2.6219 5.9400 -1.2123 34 1 2.6157 6.0982 0.5605 35 1 4.8187 7.2319 0.4678 36 1 4.8255 7.0741 -1.3051 37 1 5.7928 10.5790 -0.7187 38 1 5.3178 0.0753 0.0014 39 1 4.1563 -2.1171 0.0109 40 1 0.0011 -2.2390 1.6599 41 1 1.3226 -6.5417 -0.6647 42 1 -0.3621 -6.1686 -1.1015 43 1 0.9613 -5.7374 -2.2109 44 1 2.4050 -3.5953 -1.6300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455723674.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:37 Heat of formation + Delta-G solvation = 92.034926 kcal Electronic energy + Delta-G solvation = -26179.441085 eV Core-core repulsion = 22327.038566 eV Total energy + Delta-G solvation = -3852.402519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59291 -40.59665 -39.08438 -35.51128 -34.56498 -33.72829 -32.97214 -32.83148 -31.80369 -29.85532 -29.34241 -27.59139 -26.68222 -24.83817 -23.41032 -22.35360 -21.37947 -21.08275 -20.69258 -20.44193 -18.20126 -17.54022 -17.43660 -16.32602 -16.05248 -15.69517 -15.45432 -15.38606 -14.70073 -14.57863 -14.44579 -14.29537 -13.84318 -13.55574 -13.38670 -13.29480 -13.17702 -13.12565 -12.89517 -12.44560 -12.27615 -12.24318 -12.07548 -11.16918 -11.14360 -11.03296 -10.60414 -10.56868 -10.25106 -10.10998 -9.77812 -9.73186 -9.60522 -9.29678 -9.09166 -8.80309 -8.51368 -8.32758 -7.79633 -6.08265 -4.10603 0.96025 1.27796 1.60353 2.14170 2.51991 2.72934 3.29897 3.37528 3.43215 3.47185 3.97580 4.11777 4.19634 4.42821 4.48775 4.62590 4.67784 4.68788 4.71725 4.91295 4.94758 4.97083 5.14755 5.29161 5.34666 5.46004 5.60152 5.64221 5.64622 5.86030 6.01748 6.15441 6.29496 6.31177 6.33899 6.40825 6.60277 6.77608 6.81528 6.97445 7.04061 7.34690 7.56115 7.64027 7.90998 8.03662 8.27789 8.44580 8.93960 8.99138 9.54226 11.03451 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.036005 B = 0.001787 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.481643 B =15664.372454 C =16205.300505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.176 3.824 3 N -0.468 5.468 4 C 0.390 3.610 5 N -0.674 5.674 6 C 0.685 3.315 7 O -0.533 6.533 8 N -0.736 5.736 9 C 0.141 3.859 10 C 0.012 3.988 11 C -0.520 4.520 12 H 0.061 0.939 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 C -0.219 4.219 20 C -0.037 4.037 21 C -0.103 4.103 22 C -0.182 4.182 23 C 0.065 3.935 24 N -0.298 5.298 25 N -0.377 5.377 26 C 0.102 3.898 27 C 0.065 3.935 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.411 0.589 32 H 0.393 0.607 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.022 0.978 37 H 0.261 0.739 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.185 0.815 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -32.149 -0.428 32.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.036 3.964 3 N -0.183 5.183 4 C 0.157 3.843 5 N -0.322 5.322 6 C 0.385 3.615 7 O -0.404 6.404 8 N -0.390 5.390 9 C 0.018 3.982 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.243 4.243 20 C -0.063 4.063 21 C -0.108 4.108 22 C -0.194 4.194 23 C -0.121 4.121 24 N -0.118 5.118 25 N -0.158 5.158 26 C -0.040 4.040 27 C -0.082 4.082 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.226 0.774 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.202 0.798 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.522 -32.217 -0.272 32.534 hybrid contribution 1.871 0.882 -0.271 2.086 sum -2.651 -31.335 -0.542 31.452 Atomic orbital electron populations 1.20757 0.88861 1.03413 1.02971 1.21226 0.96776 0.86300 0.92126 1.67544 1.07010 1.28211 1.15503 1.18208 0.88867 0.84447 0.92819 1.42911 1.10341 1.03453 1.75508 1.16175 0.85971 0.80215 0.79173 1.91020 1.10737 1.84889 1.53792 1.45607 1.10150 1.05513 1.77760 1.21631 0.94738 0.81146 1.00677 1.19340 0.94697 0.90699 0.97794 1.21096 0.93327 0.90812 1.50610 0.92114 1.24993 0.94948 0.99322 0.95049 1.69963 1.07429 1.25581 1.50389 0.86454 0.80474 0.83011 0.77619 1.19547 1.20957 1.20970 1.21289 1.00673 0.91452 1.10908 1.21254 0.93088 0.97261 0.94720 1.18661 0.92686 0.91628 1.07800 1.18580 1.03405 0.95256 1.02133 1.24039 0.95636 0.93004 0.99437 1.77283 1.17556 1.13378 1.03619 1.48375 1.27151 1.13750 1.26533 1.21869 1.04525 0.80518 0.97054 1.22549 0.96135 0.88884 1.00616 0.90416 0.90181 0.90756 0.75286 0.77426 0.92608 0.92600 0.95918 0.95930 0.92938 0.84780 0.84900 0.79808 0.90708 0.89214 0.89420 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 8.94 36.01 0.32 -0.83 16 2 C 0.18 2.32 6.81 -82.26 -0.56 1.76 16 3 N -0.47 -7.66 7.77 -8.34 -0.06 -7.72 16 4 C 0.39 5.47 7.42 -154.65 -1.15 4.32 16 5 N -0.67 -9.23 5.40 -15.79 -0.09 -9.31 16 6 C 0.69 12.45 8.52 -86.92 -0.74 11.71 16 7 O -0.53 -11.91 14.60 5.29 0.08 -11.84 16 8 N -0.74 -13.03 5.56 -65.23 -0.36 -13.40 16 9 C 0.14 3.04 5.61 -4.04 -0.02 3.01 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 12 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 15 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.22 -2.22 9.92 -39.29 -0.39 -2.61 16 20 C -0.04 -0.34 9.85 -39.00 -0.38 -0.73 16 21 C -0.10 -1.09 5.77 -104.72 -0.60 -1.70 16 22 C -0.18 -1.68 4.73 -105.35 -0.50 -2.18 16 23 C 0.07 0.62 10.26 -17.06 -0.18 0.45 16 24 N -0.30 -3.03 12.54 30.80 0.39 -2.64 16 25 N -0.38 -2.92 4.00 -67.89 -0.27 -3.19 16 26 C 0.10 0.36 11.46 59.85 0.69 1.04 16 27 C 0.06 0.48 11.37 -16.87 -0.19 0.29 16 28 H 0.08 0.76 8.00 -51.93 -0.42 0.35 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 0.73 6.48 -51.93 -0.34 0.39 16 31 H 0.41 3.89 8.71 -40.82 -0.36 3.54 16 32 H 0.39 5.81 8.49 -40.82 -0.35 5.46 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 40 H 0.19 1.43 7.77 -52.48 -0.41 1.02 16 41 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -37.20 379.16 -9.21 -46.40 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.05 Total: 3.44 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -4.26 Total: 1.46 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.34 Total: -61.64 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.20 -9.21 -46.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455723674.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.439 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds