Wall clock time and date at job start Sat Apr 11 2020 02:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30690 * 125.85206 * 2 1 4 4 C 1.33996 * 109.77578 * 179.97438 * 3 2 1 5 5 C 1.48320 * 125.65680 * 179.97438 * 4 3 2 6 6 C 1.39275 * 120.15592 * 355.13519 * 5 4 3 7 7 C 1.38019 * 119.94705 * 180.02562 * 6 5 4 8 8 C 1.38406 * 120.26609 * 359.97315 * 7 6 5 9 9 C 1.50701 * 119.83598 * 180.02562 * 8 7 6 10 10 C 1.38135 * 120.32151 * 0.05097 * 8 7 6 11 11 C 1.38743 * 120.04610 * 359.94992 * 10 8 7 12 12 N 1.39739 * 120.13124 * 180.02562 * 11 10 8 13 13 C 1.34777 * 120.00061 * 325.96422 * 12 11 10 14 14 O 1.21284 * 120.00020 * 4.91334 * 13 12 11 15 15 C 1.50699 * 119.99980 * 184.91334 * 13 12 11 16 16 N 1.46505 * 109.47078 * 180.02562 * 15 13 12 17 17 C 1.46497 * 119.99816 * 89.99805 * 16 15 13 18 18 C 1.36931 * 119.99540 * 269.99997 * 16 15 13 19 19 H 1.07996 * 120.00560 * 27.02456 * 18 16 15 20 20 C 1.38821 * 119.99587 * 207.02270 * 18 16 15 21 21 N 1.31613 * 119.99918 * 9.02553 * 20 18 16 22 22 Si 1.86804 * 119.99893 * 189.02219 * 20 18 16 23 23 H 1.48508 * 109.47092 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46834 * 120.00110 * 22 20 18 25 25 H 1.48498 * 109.47132 * 240.00149 * 22 20 18 26 26 N 1.31533 * 108.68843 * 0.26632 * 4 3 2 27 27 N 1.34514 * 125.84407 * 179.97438 * 2 1 3 28 28 H 0.97001 * 126.73838 * 0.02562 * 27 2 1 29 29 H 1.09002 * 109.46941 * 90.02386 * 1 2 3 30 30 H 1.08993 * 109.47078 * 210.02285 * 1 2 3 31 31 H 1.08996 * 109.46788 * 330.02713 * 1 2 3 32 32 H 1.07998 * 120.02678 * 359.74354 * 6 5 4 33 33 H 1.07995 * 119.86409 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47131 * 270.02499 * 9 8 7 35 35 H 1.09000 * 109.47094 * 30.02737 * 9 8 7 36 36 H 1.09009 * 109.46822 * 150.02509 * 9 8 7 37 37 H 1.07999 * 119.98204 * 179.97438 * 10 8 7 38 38 H 0.97003 * 120.00165 * 145.96968 * 12 11 10 39 39 H 1.08998 * 109.46920 * 299.99847 * 15 13 12 40 40 H 1.08996 * 109.47123 * 59.99909 * 15 13 12 41 41 H 1.09005 * 109.46988 * 85.75599 * 17 16 15 42 42 H 1.09003 * 109.46757 * 205.74915 * 17 16 15 43 43 H 1.08999 * 109.47689 * 325.75193 * 17 16 15 44 44 H 0.97004 * 119.99923 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0593 0.0000 4 6 3.5600 0.6882 0.0006 5 6 4.7245 1.6068 0.0002 6 6 4.5307 2.9822 -0.1029 7 6 5.6175 3.8330 -0.1034 8 6 6.9010 3.3252 -0.0011 9 6 8.0806 4.2631 -0.0019 10 6 7.1060 1.9630 0.1012 11 6 6.0230 1.0957 0.1030 12 7 6.2283 -0.2826 0.2069 13 6 7.3169 -0.8459 -0.3535 14 8 8.1630 -0.1475 -0.8704 15 6 7.4827 -2.3437 -0.3378 16 7 8.7372 -2.7031 -1.0036 17 6 9.9757 -2.8035 -0.2276 18 6 8.7520 -2.9452 -2.3513 19 1 8.0184 -2.4785 -2.9919 20 6 9.7102 -3.7904 -2.8941 21 7 10.4894 -4.4963 -2.1025 22 14 9.8935 -3.9259 -4.7482 23 1 8.9059 -3.0355 -5.4096 24 1 11.2667 -3.5192 -5.1408 25 1 9.6539 -5.3300 -5.1680 26 7 3.6200 -0.6257 -0.0049 27 7 2.2947 -1.0904 0.0005 28 1 2.0044 -2.0159 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.5312 3.3823 -0.1871 33 1 5.4657 4.8992 -0.1830 34 1 8.4190 4.4204 -1.0261 35 1 7.7861 5.2177 0.4341 36 1 8.8900 3.8294 0.5856 37 1 8.1099 1.5727 0.1804 38 1 5.5872 -0.8339 0.6824 39 1 7.5053 -2.6960 0.6935 40 1 6.6470 -2.8073 -0.8619 41 1 10.0541 -3.8014 0.2040 42 1 10.8294 -2.6221 -0.8807 43 1 9.9652 -2.0619 0.5711 44 1 11.1587 -5.0872 -2.4818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487435977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:43 Heat of formation + Delta-G solvation = 106.543812 kcal Electronic energy + Delta-G solvation = -27717.321239 eV Core-core repulsion = 23865.547872 eV Total energy + Delta-G solvation = -3851.773366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.26624 -40.07127 -38.23429 -35.28003 -34.64142 -33.52156 -32.61282 -31.73462 -31.32630 -29.73255 -28.51888 -27.01626 -26.92204 -25.74550 -23.17679 -22.58698 -21.70694 -20.95506 -20.28128 -19.70090 -18.04685 -17.05981 -16.56908 -16.39306 -15.98444 -15.81941 -15.16225 -14.77209 -14.46554 -14.16299 -13.86402 -13.69329 -13.56539 -13.39516 -13.34165 -13.19561 -13.04723 -12.79508 -12.22648 -12.14221 -12.03887 -11.71748 -11.54759 -11.21494 -11.20046 -10.85304 -10.68786 -10.45771 -10.35819 -10.26709 -9.98052 -9.92650 -9.87641 -9.84172 -9.13463 -8.48956 -8.38007 -7.76779 -6.71895 -5.73946 -3.21321 0.87073 1.54497 1.64254 2.40468 2.86164 3.32419 3.39833 3.47302 3.50905 3.60168 3.66766 4.03329 4.32393 4.52486 4.53118 4.91539 4.98623 5.00598 5.11519 5.31720 5.36133 5.42230 5.45985 5.57923 5.62966 5.67859 5.70036 5.84092 5.96930 6.08405 6.11852 6.16123 6.23119 6.33492 6.47935 6.51989 6.69373 6.81643 6.84490 6.89018 7.25975 7.41683 7.69987 7.83983 7.85747 7.98981 8.41740 8.86842 9.23772 9.83054 10.32764 11.33154 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.003679 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.609766 B = 7608.522371 C = 9318.488457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.533 5.533 4 C 0.286 3.714 5 C -0.072 4.072 6 C -0.052 4.052 7 C -0.156 4.156 8 C -0.049 4.049 9 C -0.115 4.115 10 C -0.134 4.134 11 C 0.203 3.797 12 N -0.677 5.677 13 C 0.476 3.524 14 O -0.503 6.503 15 C 0.138 3.862 16 N -0.572 5.572 17 C 0.164 3.836 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.006 3.994 21 N -0.907 5.907 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.289 1.289 26 N -0.312 5.312 27 N -0.481 5.481 28 H 0.441 0.559 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.148 0.852 38 H 0.411 0.589 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.022 0.978 42 H 0.058 0.942 43 H -0.006 1.006 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.219 11.953 8.636 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.005 3.995 3 N -0.263 5.263 4 C 0.007 3.993 5 C -0.078 4.078 6 C -0.072 4.072 7 C -0.175 4.175 8 C -0.051 4.051 9 C -0.171 4.171 10 C -0.155 4.155 11 C 0.103 3.897 12 N -0.325 5.325 13 C 0.262 3.738 14 O -0.375 6.375 15 C 0.005 3.995 16 N -0.292 5.292 17 C 0.019 3.981 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.737 3.263 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.216 1.216 26 N -0.142 5.142 27 N -0.200 5.200 28 H 0.287 0.713 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.251 0.749 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.012 0.988 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.820 12.104 8.168 23.038 hybrid contribution -0.647 -1.042 -0.897 1.519 sum -18.467 11.062 7.271 22.721 Atomic orbital electron populations 1.20397 0.83596 1.04995 1.04621 1.24360 0.96594 0.82835 0.95708 1.70447 1.00908 1.29270 1.25628 1.22214 0.91266 0.88808 0.96967 1.17245 0.87209 0.91797 1.11561 1.20893 0.99482 0.90772 0.96103 1.20839 0.91617 0.99569 1.05445 1.19966 0.95020 0.93849 0.96225 1.20817 0.95764 0.97821 1.02716 1.21220 0.99590 0.91671 1.03006 1.17876 0.91836 0.84719 0.95251 1.44359 1.27271 1.05248 1.55672 1.23859 0.79541 0.94408 0.75983 1.90607 1.40822 1.63908 1.42179 1.20636 0.92600 0.87887 0.98353 1.43550 1.01720 1.78059 1.05851 1.20815 0.88741 0.95715 0.92801 1.19181 1.15164 1.21136 0.82540 0.91765 1.25060 0.99516 0.96580 0.98042 1.70058 1.23579 1.28399 1.33095 0.86136 0.77741 0.77242 0.85147 1.20277 1.21474 1.21625 1.78081 0.96387 1.11736 1.27970 1.47950 1.04140 1.10078 1.57805 0.71282 0.88958 0.89806 0.88344 0.84833 0.85754 0.90813 0.91546 0.91296 0.83480 0.74935 0.91258 0.89975 0.95924 0.92335 0.98771 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.51 36.01 0.38 0.04 16 2 C 0.28 2.75 8.22 -155.74 -1.28 1.46 16 3 N -0.53 -7.03 10.83 -8.57 -0.09 -7.13 16 4 C 0.29 4.32 7.71 -156.62 -1.21 3.11 16 5 C -0.07 -1.13 5.89 -104.73 -0.62 -1.75 16 6 C -0.05 -0.70 9.68 -39.28 -0.38 -1.08 16 7 C -0.16 -1.93 9.68 -39.60 -0.38 -2.32 16 8 C -0.05 -0.68 5.88 -104.60 -0.62 -1.29 16 9 C -0.11 -1.26 10.00 36.01 0.36 -0.90 16 10 C -0.13 -2.27 8.34 -39.43 -0.33 -2.60 16 11 C 0.20 3.49 6.33 -83.44 -0.53 2.96 16 12 N -0.68 -11.85 4.70 -9.69 -0.05 -11.89 16 13 C 0.48 9.99 7.75 -10.99 -0.09 9.90 16 14 O -0.50 -12.36 13.79 5.55 0.08 -12.28 16 15 C 0.14 2.95 6.17 -5.19 -0.03 2.91 16 16 N -0.57 -15.16 2.40 -182.50 -0.44 -15.60 16 17 C 0.16 4.25 8.99 59.85 0.54 4.79 16 18 C -0.25 -7.27 9.62 -15.06 -0.14 -7.41 16 19 H 0.06 1.89 7.84 -52.49 -0.41 1.48 16 20 C 0.01 0.18 5.11 -17.43 -0.09 0.09 16 21 N -0.91 -26.95 10.80 55.49 0.60 -26.35 16 22 Si 0.91 22.78 29.56 -169.99 -5.03 17.76 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 N -0.31 -4.46 10.05 32.09 0.32 -4.14 16 27 N -0.48 -4.81 7.44 32.61 0.24 -4.57 16 28 H 0.44 2.76 8.96 -182.34 -1.63 1.13 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.13 1.59 7.84 -52.49 -0.41 1.18 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.07 0.76 8.08 -51.92 -0.42 0.34 16 37 H 0.15 2.78 6.13 -52.49 -0.32 2.46 16 38 H 0.41 6.45 6.52 -40.82 -0.27 6.18 16 39 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 41 H 0.02 0.60 7.79 -51.93 -0.40 0.19 16 42 H 0.06 1.66 6.88 -51.93 -0.36 1.30 16 43 H -0.01 -0.15 8.10 -51.93 -0.42 -0.57 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -36.88 372.07 -10.32 -47.21 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.15 Total: 3.47 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -4.41 Total: 7.92 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: 0.59 Total: -69.69 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.88 -10.32 -47.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487435977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.750 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds