Wall clock time and date at job start Sat Apr 11 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39732 * 125.77478 * 2 1 4 4 C 1.36158 * 107.86003 * 179.97438 * 3 2 1 5 5 N 1.39362 * 126.26423 * 180.02562 * 4 3 2 6 6 C 1.34767 * 119.99864 * 0.02562 * 5 4 3 7 7 O 1.21756 * 120.00717 * 0.02562 * 6 5 4 8 8 C 1.41780 * 119.99751 * 180.02562 * 6 5 4 9 9 C 1.35060 * 119.99886 * 173.33530 * 8 6 5 10 10 C 1.46963 * 120.00505 * 350.22945 * 9 8 6 11 11 C 1.41434 * 126.43917 * 316.91929 * 10 9 8 12 12 N 1.30449 * 108.03968 * 179.97438 * 11 10 9 13 13 N 1.39926 * 108.96459 * 0.02562 * 12 11 10 14 14 C 1.46496 * 125.73813 * 179.97438 * 13 12 11 15 15 C 1.34399 * 108.51288 * 359.74397 * 13 12 11 16 16 C 1.50703 * 126.31982 * 180.27640 * 15 13 12 17 17 N 1.35814 * 107.46862 * 0.02562 * 4 3 2 18 18 C 1.46499 * 126.08850 * 180.02562 * 17 4 3 19 19 C 1.50694 * 109.46915 * 269.99234 * 18 17 4 20 20 H 1.08003 * 120.00350 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00237 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00507 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99772 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47052 * 90.00344 * 23 21 19 25 25 H 1.48494 * 109.47156 * 210.00368 * 23 21 19 26 26 H 1.48502 * 109.47143 * 330.00458 * 23 21 19 27 27 N 1.30831 * 125.78498 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47067 * 270.02312 * 1 2 3 29 29 H 1.08999 * 109.47308 * 30.02568 * 1 2 3 30 30 H 1.09005 * 109.46526 * 150.02212 * 1 2 3 31 31 H 1.08007 * 126.07224 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99669 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.99730 * 353.33006 * 8 6 5 34 34 H 1.08007 * 120.00191 * 170.23550 * 9 8 6 35 35 H 1.07998 * 125.98278 * 359.97438 * 11 10 9 36 36 H 1.09001 * 109.47534 * 89.97098 * 14 13 12 37 37 H 1.09007 * 109.47032 * 209.96473 * 14 13 12 38 38 H 1.08994 * 109.47471 * 329.96909 * 14 13 12 39 39 H 1.09006 * 109.46629 * 270.15174 * 16 15 13 40 40 H 1.09002 * 109.46789 * 30.14595 * 16 15 13 41 41 H 1.08994 * 109.47473 * 150.15245 * 16 15 13 42 42 H 1.08994 * 109.47333 * 29.99858 * 18 17 4 43 43 H 1.09011 * 109.46677 * 150.00057 * 18 17 4 44 44 H 0.96996 * 120.00327 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1337 0.0000 4 6 3.6194 0.7148 0.0006 5 7 4.7494 1.5305 0.0013 6 6 4.6127 2.8712 0.0020 7 8 3.5020 3.3700 0.0024 8 6 5.7624 3.7009 0.0021 9 6 5.6300 5.0382 -0.1330 10 6 4.3273 5.6151 -0.4936 11 6 3.4341 5.1250 -1.4746 12 7 2.3904 5.9072 -1.4976 13 7 2.5609 6.9209 -0.5482 14 6 1.6096 7.9990 -0.2673 15 6 3.7419 6.7360 0.0661 16 6 4.3224 7.5935 1.1611 17 7 3.6088 -0.6433 0.0004 18 6 4.7860 -1.5154 0.0013 19 6 5.1908 -1.8143 -1.4191 20 1 4.6278 -1.3961 -2.2405 21 6 6.2798 -2.6217 -1.6703 22 7 6.6335 -2.8822 -2.9099 23 14 7.2540 -3.3444 -0.2497 24 1 6.6783 -4.6607 0.1263 25 1 8.6699 -3.5225 -0.6603 26 1 7.1882 -2.4247 0.9144 27 7 2.2720 -1.0613 -0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3632 -0.8903 -0.5135 31 1 1.9873 2.1600 0.0004 32 1 5.6343 1.1331 0.0013 33 1 6.7439 3.2636 0.1103 34 1 6.4815 5.6838 0.0239 35 1 3.5890 4.2554 -2.0960 36 1 0.9170 7.6789 0.5111 37 1 2.1513 8.8830 0.0695 38 1 1.0528 8.2375 -1.1734 39 1 4.9193 8.3916 0.7196 40 1 3.5141 8.0274 1.7498 41 1 4.9535 6.9817 1.8056 42 1 5.6072 -1.0167 0.5160 43 1 4.5475 -2.4469 0.5148 44 1 7.3999 -3.4499 -3.0866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492301742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:20:50 Heat of formation + Delta-G solvation = 127.605487 kcal Electronic energy + Delta-G solvation = -27727.840413 eV Core-core repulsion = 23876.980349 eV Total energy + Delta-G solvation = -3850.860064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46201 -42.03993 -40.50889 -36.29164 -35.63658 -34.94182 -34.11033 -33.94487 -32.16166 -31.11411 -29.92039 -28.02696 -27.73773 -27.44834 -25.07836 -24.21430 -22.61495 -21.43258 -21.14058 -20.78516 -19.69057 -19.25795 -18.30808 -17.90808 -17.16182 -16.67325 -16.51110 -16.33467 -16.04477 -15.50090 -15.41026 -14.94515 -14.82805 -14.67271 -14.46028 -14.12566 -14.08972 -13.86512 -13.77431 -13.55708 -13.47539 -13.25626 -13.16313 -13.10373 -12.91033 -12.71318 -12.57044 -12.09347 -11.83619 -11.70054 -11.60602 -11.40777 -10.99410 -10.92613 -10.53890 -10.02709 -9.57256 -9.01951 -8.71042 -8.42289 -6.55010 -0.00635 0.94541 1.14191 1.32447 1.37205 1.44212 1.51428 1.74015 1.89272 2.12327 2.24788 2.36240 2.56895 2.89323 3.66951 3.78074 3.80663 3.95611 4.13781 4.24087 4.32318 4.42363 4.46001 4.49275 4.55497 4.57845 4.67205 4.72239 4.79635 4.83684 4.85256 4.94197 4.97818 5.06955 5.11230 5.14883 5.19440 5.21593 5.38924 5.54614 5.72854 5.88311 6.01019 6.24654 6.29272 6.44307 6.50725 6.84455 6.99375 7.09479 7.20666 8.74437 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.003321 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.399731 B = 8428.772846 C = 9645.309293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.306 4.306 4 C 0.309 3.691 5 N -0.641 5.641 6 C 0.546 3.454 7 O -0.531 6.531 8 C -0.256 4.256 9 C 0.071 3.929 10 C -0.259 4.259 11 C 0.115 3.885 12 N -0.353 5.353 13 N -0.378 5.378 14 C 0.091 3.909 15 C 0.114 3.886 16 C -0.090 4.090 17 N -0.371 5.371 18 C 0.240 3.760 19 C -0.554 4.554 20 H 0.020 0.980 21 C 0.024 3.976 22 N -0.935 5.935 23 Si 0.953 3.047 24 H -0.269 1.269 25 H -0.271 1.271 26 H -0.232 1.232 27 N -0.331 5.331 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.163 0.837 32 H 0.419 0.581 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 25.129 12.325 27.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.338 4.338 4 C 0.087 3.913 5 N -0.289 5.289 6 C 0.340 3.660 7 O -0.409 6.409 8 C -0.277 4.277 9 C 0.050 3.950 10 C -0.270 4.270 11 C -0.071 4.071 12 N -0.174 5.174 13 N -0.159 5.159 14 C -0.048 4.048 15 C -0.017 4.017 16 C -0.148 4.148 17 N -0.157 5.157 18 C 0.121 3.879 19 C -0.592 4.592 20 H 0.038 0.962 21 C -0.176 4.176 22 N -0.573 5.573 23 Si 0.774 3.226 24 H -0.194 1.194 25 H -0.196 1.196 26 H -0.155 1.155 27 N -0.155 5.155 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.180 0.820 32 H 0.256 0.744 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.170 0.830 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.414 24.441 11.682 27.196 hybrid contribution 1.400 -0.891 -0.188 1.670 sum -1.014 23.550 11.494 26.224 Atomic orbital electron populations 1.20197 0.84234 1.03570 1.03839 1.22831 0.98630 0.90236 0.99085 1.21405 0.89282 1.00450 1.22649 1.18427 0.89841 0.82547 1.00527 1.43136 1.07054 1.06351 1.72331 1.18011 0.91730 0.80209 0.76055 1.90797 1.28276 1.72909 1.48895 1.21873 0.97779 0.94558 1.13485 1.22084 0.94456 0.93503 0.84968 1.19329 1.00501 1.00778 1.06414 1.23546 0.90661 0.95732 0.97209 1.77027 1.23958 1.02620 1.13754 1.48464 1.15969 1.22882 1.28537 1.22162 0.92325 0.87022 1.03334 1.22188 0.87134 0.95994 0.96354 1.20673 1.01923 0.98656 0.93535 1.48955 1.05918 1.02779 1.58068 1.19727 0.80562 0.90622 0.97034 1.21228 1.14164 1.32834 0.90975 0.96202 1.25857 0.97525 0.95133 0.99130 1.70037 1.27898 1.37671 1.21706 0.85652 0.77895 0.79938 0.79121 1.19386 1.19586 1.15468 1.77241 0.86440 1.23465 1.28390 0.88997 0.89488 0.90927 0.82019 0.74361 0.81883 0.80348 0.83048 0.90285 0.86095 0.89357 0.87405 0.89406 0.88588 0.91402 0.93274 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.44 71.24 0.74 -1.11 16 2 C 0.06 2.45 7.20 43.07 0.31 2.76 16 3 C -0.31 -13.32 9.58 22.15 0.21 -13.10 16 4 C 0.31 13.63 7.68 131.19 1.01 14.63 16 5 N -0.64 -23.04 5.40 -316.14 -1.71 -24.75 16 6 C 0.55 17.44 7.07 85.12 0.60 18.04 16 7 O -0.53 -19.58 8.93 -4.53 -0.04 -19.62 16 8 C -0.26 -5.54 9.82 22.41 0.22 -5.32 16 9 C 0.07 1.26 9.77 23.83 0.23 1.50 16 10 C -0.26 -6.29 4.67 -20.19 -0.09 -6.39 16 11 C 0.12 3.66 8.86 85.69 0.76 4.42 16 12 N -0.35 -11.29 12.49 -56.18 -0.70 -11.99 16 13 N -0.38 -8.61 3.98 -354.00 -1.41 -10.02 16 14 C 0.09 1.13 11.06 127.77 1.41 2.54 16 15 C 0.11 2.21 7.02 42.18 0.30 2.51 16 16 C -0.09 -0.72 9.71 71.24 0.69 -0.03 16 17 N -0.37 -18.05 3.62 -348.33 -1.26 -19.31 16 18 C 0.24 11.63 5.09 85.63 0.44 12.06 16 19 C -0.55 -32.06 9.94 25.60 0.25 -31.81 16 20 H 0.02 1.35 8.06 -2.91 -0.02 1.32 16 21 C 0.02 1.33 5.47 84.66 0.46 1.79 16 22 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 23 Si 0.95 40.33 27.47 68.60 1.88 42.22 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 27 N -0.33 -16.19 12.56 -47.47 -0.60 -16.79 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.16 7.02 5.82 -2.91 -0.02 7.01 16 32 H 0.42 13.50 7.95 -92.71 -0.74 12.76 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 35 H 0.15 5.30 7.55 -2.91 -0.02 5.28 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 0.55 7.64 -2.38 -0.02 0.53 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.09 0.46 7.72 -2.39 -0.02 0.44 16 41 H 0.10 0.66 7.97 -2.39 -0.02 0.64 16 42 H 0.07 2.86 6.58 -2.39 -0.02 2.84 16 43 H 0.05 2.36 7.57 -2.38 -0.02 2.34 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -86.61 372.68 4.25 -82.36 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.24 Total: 31.94 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 7.55 Total: 2.50 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -5.38 Total: -139.39 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.04 Total: -19.62 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.88 Total: 42.22 kcal Total: -86.61 4.25 -82.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492301742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.965 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds