Wall clock time and date at job start Sat Apr 11 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39750 * 125.83959 * 2 1 4 4 C 1.36112 * 107.82950 * 179.97438 * 3 2 1 5 5 N 1.39472 * 126.21604 * 179.97438 * 4 3 2 6 6 C 1.34771 * 120.00201 * 0.02580 * 5 4 3 7 7 O 1.21290 * 119.99972 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00447 * 179.97438 * 6 5 4 9 9 H 1.09000 * 109.37649 * 299.86297 * 8 6 5 10 10 C 1.53020 * 109.42868 * 179.97438 * 8 6 5 11 11 C 1.53386 * 109.68381 * 168.18317 * 10 8 6 12 12 C 1.50882 * 108.20024 * 50.56530 * 11 10 8 13 13 C 1.34561 * 128.33118 * 163.40506 * 12 11 10 14 14 N 1.35204 * 107.62150 * 180.02562 * 13 12 11 15 15 H 0.96995 * 126.00303 * 179.97438 * 14 13 12 16 16 N 1.40319 * 107.98879 * 359.97438 * 14 13 12 17 17 C 1.30128 * 108.12147 * 359.95913 * 16 14 13 18 18 C 1.50946 * 128.28163 * 180.18608 * 17 16 14 19 19 N 1.35262 * 107.56612 * 0.26171 * 4 3 2 20 20 C 1.46494 * 126.04753 * 179.73926 * 19 4 3 21 21 C 1.50704 * 109.47172 * 89.99742 * 20 19 4 22 22 H 1.07999 * 119.99639 * 0.02562 * 21 20 19 23 23 C 1.37869 * 120.00180 * 179.97438 * 21 20 19 24 24 N 1.31522 * 119.99937 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00026 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47402 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47124 * 120.00001 * 25 23 21 28 28 H 1.48499 * 109.47045 * 239.99814 * 25 23 21 29 29 N 1.30852 * 125.83343 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47676 * 89.99651 * 1 2 3 31 31 H 1.09005 * 109.47299 * 210.00210 * 1 2 3 32 32 H 1.09006 * 109.46875 * 329.99867 * 1 2 3 33 33 H 1.08004 * 126.08893 * 359.94586 * 3 2 1 34 34 H 0.97003 * 120.00061 * 180.02562 * 5 4 3 35 35 H 1.09002 * 109.42816 * 48.13007 * 10 8 6 36 36 H 1.09002 * 109.42715 * 288.23859 * 10 8 6 37 37 H 1.09003 * 109.71505 * 170.23991 * 11 10 8 38 38 H 1.08996 * 109.72111 * 290.83869 * 11 10 8 39 39 H 1.08000 * 126.19294 * 0.10045 * 13 12 11 40 40 H 1.08995 * 109.71767 * 282.86322 * 18 17 16 41 41 H 1.09005 * 109.71821 * 43.47257 * 18 17 16 42 42 H 1.08993 * 109.47634 * 210.00071 * 20 19 4 43 43 H 1.09004 * 109.47132 * 330.00270 * 20 19 4 44 44 H 0.97004 * 119.99847 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7121 0.0006 5 7 4.7513 1.5274 0.0003 6 6 4.6158 2.8683 -0.0002 7 8 3.5097 3.3660 -0.0007 8 6 5.8384 3.7493 0.0001 9 1 6.4308 3.5456 0.8921 10 6 5.4077 5.2176 -0.0011 11 6 6.6186 6.1115 0.2949 12 6 7.7381 5.7112 -0.6340 13 6 8.8536 6.3982 -0.9413 14 7 9.5670 5.6514 -1.8139 15 1 10.4186 5.8946 -2.2092 16 7 8.8587 4.4627 -2.0470 17 6 7.7661 4.4974 -1.3410 18 6 6.6791 3.4542 -1.2483 19 7 3.6092 -0.6405 -0.0050 20 6 4.7870 -1.5117 -0.0118 21 6 5.1948 -1.8162 1.4067 22 1 4.6326 -1.4025 2.2308 23 6 6.2849 -2.6238 1.6523 24 7 6.9692 -3.1280 0.6486 25 14 6.7900 -3.0018 3.4105 26 1 5.8638 -2.3192 4.3493 27 1 6.7323 -4.4682 3.6377 28 1 8.1751 -2.5192 3.6423 29 7 2.2731 -1.0608 0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.9902 2.1597 -0.0008 34 1 5.6359 1.1294 0.0004 35 1 4.6468 5.3729 0.7637 36 1 4.9976 5.4744 -0.9779 37 1 6.3553 7.1555 0.1249 38 1 6.9320 5.9753 1.3298 39 1 9.1298 7.3698 -0.5590 40 1 6.0490 3.4998 -2.1364 41 1 7.1262 2.4636 -1.1650 42 1 4.5485 -2.4411 -0.5288 43 1 5.6070 -1.0101 -0.5258 44 1 7.7360 -3.6964 0.8214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525191234.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:05 Heat of formation + Delta-G solvation = 80.829635 kcal Electronic energy + Delta-G solvation = -27699.950219 eV Core-core repulsion = 23847.061802 eV Total energy + Delta-G solvation = -3852.888417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.58308 -42.25259 -40.73239 -37.21442 -36.26459 -35.59593 -33.83799 -33.14741 -31.87986 -30.71275 -29.80970 -29.33079 -27.79925 -26.18245 -24.79647 -23.84108 -22.15056 -21.93433 -21.19107 -20.64405 -19.81184 -18.88288 -18.49351 -18.36681 -17.65740 -16.80253 -16.64486 -16.31199 -16.03241 -15.67701 -15.54502 -14.88511 -14.80956 -14.63861 -14.48765 -14.40064 -14.03883 -13.85893 -13.72964 -13.54284 -13.35998 -13.10479 -12.96030 -12.84705 -12.71536 -12.36925 -12.31464 -12.15914 -11.90084 -11.84123 -11.65837 -11.40731 -11.20741 -10.83100 -10.76527 -10.37590 -9.61588 -9.30455 -9.04003 -8.36520 -6.54009 0.80532 1.00990 1.34740 1.36070 1.39557 1.50664 1.63574 1.78539 2.00786 2.10529 2.22151 2.35987 2.93972 3.28598 3.57029 3.75823 3.85765 3.92581 4.06712 4.23072 4.34620 4.40419 4.47548 4.60835 4.64108 4.68317 4.73922 4.83128 4.85052 4.91734 4.91877 4.97448 4.99547 5.08508 5.23812 5.25146 5.29020 5.30015 5.42062 5.51312 5.71956 5.76969 5.98932 6.17555 6.30003 6.53047 6.57772 6.74777 6.97407 7.05691 7.18369 8.70099 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009369 B = 0.003831 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.865513 B = 7307.616493 C = 9435.401867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.307 4.307 4 C 0.299 3.701 5 N -0.640 5.640 6 C 0.528 3.472 7 O -0.531 6.531 8 C -0.082 4.082 9 H 0.121 0.879 10 C -0.094 4.094 11 C -0.031 4.031 12 C -0.257 4.257 13 C 0.078 3.922 14 N -0.479 5.479 15 H 0.451 0.549 16 N -0.330 5.330 17 C 0.070 3.930 18 C -0.032 4.032 19 N -0.368 5.368 20 C 0.272 3.728 21 C -0.554 4.554 22 H 0.048 0.952 23 C 0.027 3.973 24 N -0.915 5.915 25 Si 0.969 3.031 26 H -0.275 1.275 27 H -0.276 1.276 28 H -0.266 1.266 29 N -0.333 5.333 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.170 0.830 34 H 0.419 0.581 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.220 0.780 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.047 0.953 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.283 22.486 -1.704 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.338 4.338 4 C 0.077 3.923 5 N -0.287 5.287 6 C 0.316 3.684 7 O -0.406 6.406 8 C -0.104 4.104 9 H 0.139 0.861 10 C -0.132 4.132 11 C -0.069 4.069 12 C -0.268 4.268 13 C -0.068 4.068 14 N -0.189 5.189 15 H 0.298 0.702 16 N -0.153 5.153 17 C -0.098 4.098 18 C -0.071 4.071 19 N -0.153 5.153 20 C 0.153 3.847 21 C -0.592 4.592 22 H 0.066 0.934 23 C -0.174 4.174 24 N -0.552 5.552 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.201 1.201 28 H -0.190 1.190 29 N -0.158 5.158 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.188 0.812 34 H 0.257 0.743 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.564 20.753 -2.595 21.216 hybrid contribution 1.043 0.157 0.839 1.348 sum 4.607 20.910 -1.755 21.483 Atomic orbital electron populations 1.20222 0.83917 1.03886 1.03839 1.22899 0.98737 0.90108 0.99006 1.21487 0.88943 1.00853 1.22559 1.18381 0.89684 0.82802 1.01447 1.43109 1.07455 1.06187 1.72000 1.21260 0.92253 0.80462 0.74417 1.90601 1.27972 1.73794 1.48255 1.21314 0.92193 0.95961 1.00920 0.86120 1.21399 0.98363 0.90082 1.03378 1.20012 0.89792 0.99734 0.97335 1.20441 1.01215 0.96289 1.08863 1.22733 0.91947 0.99084 0.93076 1.46405 1.21199 1.13699 1.37597 0.70225 1.76980 1.08125 1.05015 1.25180 1.22200 0.94276 0.96870 0.96406 1.19987 0.92918 0.96564 0.97651 1.49152 1.06270 1.02947 1.56975 1.19207 0.78667 0.88977 0.97821 1.21437 1.13626 1.32546 0.91619 0.93393 1.25687 0.95392 0.94340 1.02011 1.70007 1.19572 1.32926 1.32744 0.85338 0.78397 0.78211 0.78723 1.19942 1.20094 1.19045 1.77304 0.86439 1.23705 1.28350 0.89262 0.90972 0.88730 0.81243 0.74311 0.90162 0.91679 0.88554 0.89871 0.76309 0.89534 0.89609 0.95590 0.93539 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.24 0.74 -0.96 16 2 C 0.06 2.34 7.21 43.07 0.31 2.65 16 3 C -0.31 -12.60 9.58 22.14 0.21 -12.39 16 4 C 0.30 12.91 7.66 131.32 1.01 13.92 16 5 N -0.64 -22.56 5.32 -308.56 -1.64 -24.20 16 6 C 0.53 15.98 7.10 87.66 0.62 16.61 16 7 O -0.53 -18.40 12.89 -3.06 -0.04 -18.44 16 8 C -0.08 -1.81 2.46 -11.41 -0.03 -1.84 16 9 H 0.12 2.38 8.10 -2.39 -0.02 2.36 16 10 C -0.09 -1.74 4.65 30.73 0.14 -1.60 16 11 C -0.03 -0.41 6.28 30.04 0.19 -0.22 16 12 C -0.26 -4.41 5.89 -20.10 -0.12 -4.53 16 13 C 0.08 0.95 11.95 83.33 1.00 1.95 16 14 N -0.48 -7.52 7.37 -57.89 -0.43 -7.94 16 15 H 0.45 4.06 8.96 -213.18 -1.91 2.15 16 16 N -0.33 -8.15 12.68 -47.14 -0.60 -8.75 16 17 C 0.07 1.62 7.10 43.44 0.31 1.92 16 18 C -0.03 -0.73 5.42 30.05 0.16 -0.57 16 19 N -0.37 -17.99 3.60 -348.72 -1.26 -19.25 16 20 C 0.27 14.29 6.01 85.64 0.51 14.81 16 21 C -0.55 -30.71 9.39 25.60 0.24 -30.47 16 22 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 23 C 0.03 1.47 5.46 84.65 0.46 1.93 16 24 N -0.91 -50.80 13.29 21.45 0.28 -50.51 16 25 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 N -0.33 -16.06 12.57 -47.45 -0.60 -16.66 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.17 6.63 5.83 -2.91 -0.02 6.61 16 34 H 0.42 14.04 7.58 -92.71 -0.70 13.34 16 35 H 0.08 1.54 7.68 -2.39 -0.02 1.52 16 36 H 0.06 1.30 8.10 -2.39 -0.02 1.29 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.22 0.55 8.06 -2.91 -0.02 0.53 16 40 H 0.09 2.04 8.13 -2.39 -0.02 2.02 16 41 H 0.09 2.03 7.84 -2.38 -0.02 2.02 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 2.37 7.50 -2.39 -0.02 2.35 16 44 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -74.84 367.94 1.96 -72.88 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -1.56 Total: 27.05 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 5.76 Total: 1.20 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.23 Total: -127.31 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.04 Total: -18.44 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.84 1.96 -72.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525191234.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.709 kcal (2) G-P(sol) polarization free energy of solvation -74.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds