Wall clock time and date at job start Sat Apr 11 2020 02:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39752 * 125.83837 * 2 1 4 4 C 1.36108 * 107.82726 * 179.97438 * 3 2 1 5 5 N 1.39479 * 126.21830 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99686 * 0.02609 * 5 4 3 7 7 O 1.21287 * 120.00121 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99779 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.50043 * 300.06636 * 8 6 5 10 10 C 1.53115 * 109.49695 * 180.02562 * 8 6 5 11 11 C 1.53290 * 109.69952 * 170.12734 * 10 8 6 12 12 N 1.46470 * 108.69366 * 50.77038 * 11 10 8 13 13 C 1.34405 * 128.44357 * 162.67795 * 12 11 10 14 14 N 1.30785 * 108.55238 * 180.19401 * 13 12 11 15 15 C 1.34433 * 109.32168 * 359.93503 * 14 13 12 16 16 C 1.33859 * 107.79399 * 0.22632 * 15 14 13 17 17 C 1.50720 * 128.67546 * 180.49754 * 16 15 14 18 18 N 1.35261 * 107.56786 * 0.23067 * 4 3 2 19 19 C 1.46497 * 126.04694 * 179.77317 * 18 4 3 20 20 C 1.50706 * 109.47332 * 90.00082 * 19 18 4 21 21 H 1.08002 * 119.99908 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00089 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00259 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 120.00145 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47309 * 89.99973 * 24 22 20 26 26 H 1.48503 * 109.47458 * 210.00060 * 24 22 20 27 27 H 1.48500 * 109.46864 * 329.99884 * 24 22 20 28 28 N 1.30848 * 125.83503 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.47311 * 89.99880 * 1 2 3 30 30 H 1.08998 * 109.47708 * 209.99838 * 1 2 3 31 31 H 1.09005 * 109.47173 * 329.99977 * 1 2 3 32 32 H 1.08000 * 126.08773 * 359.96183 * 3 2 1 33 33 H 0.96995 * 120.00095 * 180.02562 * 5 4 3 34 34 H 1.08997 * 109.43304 * 50.06046 * 10 8 6 35 35 H 1.08993 * 109.39604 * 290.17240 * 10 8 6 36 36 H 1.09000 * 109.60311 * 291.00445 * 11 10 8 37 37 H 1.08999 * 109.72797 * 170.60680 * 11 10 8 38 38 H 1.07998 * 125.72416 * 0.15353 * 13 12 11 39 39 H 1.08002 * 126.09828 * 179.97438 * 15 14 13 40 40 H 1.08994 * 109.87779 * 44.10950 * 17 16 15 41 41 H 1.08999 * 109.55713 * 283.42301 * 17 16 15 42 42 H 1.09000 * 109.47016 * 209.99577 * 19 18 4 43 43 H 1.09001 * 109.47292 * 329.99637 * 19 18 4 44 44 H 0.97000 * 120.00053 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6196 0.7121 0.0006 5 7 4.7513 1.5274 0.0003 6 6 4.6157 2.8683 -0.0001 7 8 3.5096 3.3660 -0.0007 8 6 5.8384 3.7492 0.0001 9 1 6.4342 3.5445 0.8897 10 6 5.4093 5.2190 0.0002 11 6 6.6293 6.1135 0.2479 12 7 7.6912 5.7278 -0.6843 13 6 8.7860 6.4227 -1.0376 14 7 9.4688 5.7139 -1.8990 15 6 8.8339 4.5496 -2.1195 16 6 7.7221 4.5424 -1.3741 17 6 6.6750 3.4649 -1.2550 18 7 3.6091 -0.6405 -0.0043 19 6 4.7869 -1.5117 -0.0102 20 6 5.1941 -1.8155 1.4086 21 1 4.6321 -1.4008 2.2324 22 6 6.2848 -2.6221 1.6551 23 7 6.6405 -2.8869 2.8932 24 14 7.2574 -3.3389 0.2304 25 1 8.3474 -2.4029 -0.1455 26 1 7.8422 -4.6422 0.6361 27 1 6.3559 -3.5413 -0.9322 28 7 2.2730 -1.0608 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9901 2.1596 -0.0006 33 1 5.6358 1.1293 0.0004 34 1 4.6741 5.3822 0.7882 35 1 4.9677 5.4672 -0.9649 36 1 6.9769 5.9824 1.2726 37 1 6.3599 7.1569 0.0838 38 1 9.0563 7.4024 -0.6721 39 1 9.1605 3.7625 -2.7830 40 1 7.1547 2.4903 -1.1647 41 1 6.0337 3.4802 -2.1362 42 1 4.5485 -2.4414 -0.5267 43 1 5.6071 -1.0104 -0.5242 44 1 7.4077 -3.4547 3.0666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533548371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:19 Heat of formation + Delta-G solvation = 81.679506 kcal Electronic energy + Delta-G solvation = -27845.546755 eV Core-core repulsion = 23992.695192 eV Total energy + Delta-G solvation = -3852.851564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.30172 -42.47415 -40.83842 -37.35768 -36.33458 -35.59328 -34.18765 -33.92317 -31.52661 -31.15235 -30.13261 -28.76625 -28.01675 -25.84221 -24.65273 -24.06877 -22.52049 -22.24733 -21.28213 -20.70183 -20.05680 -19.27275 -18.55750 -18.06863 -17.79943 -16.97533 -16.69376 -16.51057 -16.13687 -15.61937 -15.47437 -15.09685 -14.93578 -14.86696 -14.76761 -14.53314 -14.39288 -14.18489 -14.05651 -13.76356 -13.51997 -13.17719 -13.04674 -12.97611 -12.83194 -12.55268 -12.24728 -12.14638 -12.10401 -11.87703 -11.77854 -11.46747 -11.07406 -10.92299 -10.79764 -10.43144 -9.63247 -9.30503 -9.09618 -8.43527 -6.56148 0.72878 1.12169 1.25800 1.32567 1.38353 1.46665 1.58058 1.90085 2.02206 2.14858 2.21054 2.23837 2.88346 3.15167 3.46074 3.52240 3.71340 3.77661 3.89629 3.98368 4.11603 4.20203 4.27892 4.43331 4.43847 4.49487 4.57711 4.63788 4.67344 4.72076 4.80167 4.85381 4.88825 4.92016 4.94118 5.08204 5.13090 5.18405 5.21913 5.40536 5.78014 5.85759 5.97390 6.16653 6.30966 6.34346 6.48205 6.88365 6.97880 7.09215 7.13334 8.72722 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009652 B = 0.003965 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2900.161148 B = 7060.527776 C = 9254.968248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 C -0.305 4.305 4 C 0.302 3.698 5 N -0.638 5.638 6 C 0.530 3.470 7 O -0.532 6.532 8 C -0.096 4.096 9 H 0.120 0.880 10 C -0.110 4.110 11 C 0.105 3.895 12 N -0.456 5.456 13 C 0.188 3.812 14 N -0.540 5.540 15 C -0.045 4.045 16 C -0.025 4.025 17 C -0.035 4.035 18 N -0.366 5.366 19 C 0.238 3.762 20 C -0.553 4.553 21 H 0.023 0.977 22 C 0.027 3.973 23 N -0.934 5.934 24 Si 0.946 3.054 25 H -0.244 1.244 26 H -0.281 1.281 27 H -0.246 1.246 28 N -0.330 5.330 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.422 0.578 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.239 0.761 39 H 0.174 0.826 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.068 0.932 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 19.276 -8.317 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.337 4.337 4 C 0.080 3.920 5 N -0.285 5.285 6 C 0.318 3.682 7 O -0.406 6.406 8 C -0.117 4.117 9 H 0.138 0.862 10 C -0.148 4.148 11 C -0.016 4.016 12 N -0.140 5.140 13 C -0.095 4.095 14 N -0.259 5.259 15 C -0.191 4.191 16 C -0.140 4.140 17 C -0.073 4.073 18 N -0.152 5.152 19 C 0.118 3.882 20 C -0.591 4.591 21 H 0.041 0.959 22 C -0.174 4.174 23 N -0.572 5.572 24 Si 0.766 3.234 25 H -0.168 1.168 26 H -0.206 1.206 27 H -0.170 1.170 28 N -0.155 5.155 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.188 0.812 33 H 0.259 0.741 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.144 0.856 38 H 0.255 0.745 39 H 0.191 0.809 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.333 18.544 -8.454 20.383 hybrid contribution 0.360 -0.567 0.514 0.846 sum 0.693 17.977 -7.939 19.665 Atomic orbital electron populations 1.20235 0.83976 1.03832 1.03984 1.22893 0.98745 0.90148 0.98776 1.21494 0.89029 1.00865 1.22276 1.18318 0.89661 0.82697 1.01365 1.43012 1.07479 1.06092 1.71967 1.21075 0.91990 0.80563 0.74530 1.90625 1.27971 1.73804 1.48242 1.21425 0.92986 0.95345 1.01957 0.86166 1.21687 0.97391 0.90436 1.05283 1.22279 0.84732 1.01443 0.93108 1.45662 1.20138 1.14401 1.33782 1.25467 0.85374 1.00789 0.97832 1.70475 1.31421 1.05949 1.18083 1.22090 0.94405 0.97891 1.04739 1.21003 1.00769 0.90593 1.01596 1.20211 0.93680 0.96542 0.96916 1.48822 1.06079 1.02793 1.57460 1.19745 0.80576 0.90742 0.97101 1.21213 1.13976 1.32956 0.90991 0.95881 1.25790 0.97548 0.95092 0.98925 1.70029 1.27745 1.37633 1.21755 0.85756 0.79610 0.78973 0.79016 1.16793 1.20620 1.17000 1.77320 0.86308 1.23580 1.28246 0.88948 0.91096 0.88854 0.81204 0.74067 0.87760 0.90505 0.87641 0.85609 0.74511 0.80892 0.87779 0.89121 0.93136 0.91439 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.44 71.23 0.74 -0.91 16 2 C 0.06 2.28 7.21 43.07 0.31 2.59 16 3 C -0.30 -11.68 9.58 22.14 0.21 -11.47 16 4 C 0.30 11.90 7.66 131.32 1.01 12.91 16 5 N -0.64 -19.62 5.32 -308.56 -1.64 -21.26 16 6 C 0.53 13.77 7.09 87.66 0.62 14.39 16 7 O -0.53 -16.39 12.95 -3.05 -0.04 -16.43 16 8 C -0.10 -1.64 2.55 -11.34 -0.03 -1.67 16 9 H 0.12 1.88 8.12 -2.39 -0.02 1.86 16 10 C -0.11 -1.47 4.66 30.73 0.14 -1.32 16 11 C 0.11 0.94 7.00 86.48 0.61 1.54 16 12 N -0.46 -7.00 3.13 -514.84 -1.61 -8.61 16 13 C 0.19 3.13 12.66 180.38 2.28 5.41 16 14 N -0.54 -12.94 11.27 -200.96 -2.26 -15.20 16 15 C -0.04 -1.00 11.84 83.30 0.99 -0.01 16 16 C -0.02 -0.46 6.57 40.73 0.27 -0.20 16 17 C -0.03 -0.58 5.45 30.02 0.16 -0.42 16 18 N -0.37 -16.44 3.60 -348.71 -1.26 -17.70 16 19 C 0.24 10.82 5.07 85.64 0.43 11.26 16 20 C -0.55 -30.46 9.94 25.60 0.25 -30.21 16 21 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 22 C 0.03 1.45 5.47 84.65 0.46 1.91 16 23 N -0.93 -54.99 13.96 21.45 0.30 -54.69 16 24 Si 0.95 38.86 27.47 68.60 1.88 40.74 16 25 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 26 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 27 H -0.25 -9.44 6.54 99.48 0.65 -8.79 16 28 N -0.33 -14.97 12.56 -47.46 -0.60 -15.57 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.17 6.18 5.83 -2.91 -0.02 6.16 16 33 H 0.42 11.64 7.69 -92.71 -0.71 10.93 16 34 H 0.10 1.40 7.77 -2.39 -0.02 1.38 16 35 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 36 H 0.11 0.67 8.14 -2.39 -0.02 0.66 16 37 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.17 3.39 8.06 -2.91 -0.02 3.37 16 40 H 0.10 1.57 7.95 -2.39 -0.02 1.55 16 41 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 42 H 0.05 2.33 7.20 -2.39 -0.02 2.31 16 43 H 0.07 2.60 6.93 -2.39 -0.02 2.58 16 44 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -79.19 365.12 3.51 -75.68 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.27 Total: 29.21 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 8.47 Total: 3.82 kcal Atomic # 7 Polarization: -125.95 SS G_CDS: -7.07 Total: -133.03 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.04 Total: -16.43 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.88 Total: 40.74 kcal Total: -79.19 3.51 -75.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533548371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.361 kcal (2) G-P(sol) polarization free energy of solvation -79.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds