Wall clock time and date at job start Sat Apr 11 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39756 * 125.83380 * 2 1 4 4 C 1.36109 * 107.82751 * 180.02562 * 3 2 1 5 5 N 1.39483 * 126.21937 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99541 * 359.97438 * 5 4 3 7 7 O 1.21297 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99877 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.43068 * 59.99671 * 8 6 5 10 10 C 1.53024 * 109.43092 * 179.89960 * 8 6 5 11 11 C 1.53378 * 109.74911 * 191.80187 * 10 8 6 12 12 C 1.50945 * 108.19903 * 309.34470 * 11 10 8 13 13 N 1.30129 * 128.28329 * 196.66405 * 12 11 10 14 14 N 1.40311 * 108.12495 * 179.86363 * 13 12 11 15 15 H 0.97007 * 126.00722 * 180.02562 * 14 13 12 16 16 C 1.35199 * 107.99370 * 0.03528 * 14 13 12 17 17 C 1.34577 * 107.61465 * 0.04124 * 16 14 13 18 18 C 1.50857 * 128.34031 * 179.78151 * 17 16 14 19 19 N 1.35257 * 107.56798 * 359.97438 * 4 3 2 20 20 C 1.46506 * 126.04976 * 179.97438 * 19 4 3 21 21 C 1.50696 * 109.46871 * 89.99563 * 20 19 4 22 22 H 1.07999 * 120.00319 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99717 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 269.99586 * 25 23 21 27 27 H 1.48501 * 109.47293 * 30.00037 * 25 23 21 28 28 H 1.48504 * 109.46680 * 149.99835 * 25 23 21 29 29 N 1.30844 * 125.84159 * 180.32536 * 2 1 3 30 30 H 1.09005 * 109.47452 * 90.00391 * 1 2 3 31 31 H 1.09006 * 109.46986 * 210.00044 * 1 2 3 32 32 H 1.08994 * 109.47384 * 329.99644 * 1 2 3 33 33 H 1.07995 * 126.08953 * 359.97438 * 3 2 1 34 34 H 0.96992 * 120.00001 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.42148 * 311.88099 * 10 8 6 36 36 H 1.08997 * 109.42748 * 71.76796 * 10 8 6 37 37 H 1.08992 * 109.71495 * 69.02197 * 11 10 8 38 38 H 1.09000 * 109.71588 * 189.63061 * 11 10 8 39 39 H 1.07998 * 126.18918 * 180.02562 * 16 14 13 40 40 H 1.08999 * 109.75753 * 77.06222 * 18 17 16 41 41 H 1.09001 * 109.67342 * 316.42393 * 18 17 16 42 42 H 1.09005 * 109.46943 * 329.99883 * 20 19 4 43 43 H 1.09002 * 109.47064 * 210.00146 * 20 19 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7512 1.5277 -0.0013 6 6 4.6155 2.8686 -0.0020 7 8 3.5094 3.3663 -0.0024 8 6 5.8381 3.7496 -0.0033 9 1 6.4322 3.5441 -0.8937 10 6 5.4074 5.2180 -0.0064 11 6 6.6176 6.1125 -0.3030 12 6 7.7362 5.7168 0.6301 13 7 8.8125 6.3851 0.9274 14 7 9.5604 5.6249 1.8392 15 1 10.4102 5.8793 2.2318 16 6 8.8887 4.4754 2.0744 17 6 7.7610 4.5052 1.3407 18 6 6.6771 3.4601 1.2478 19 7 3.6092 -0.6402 -0.0004 20 6 4.7871 -1.5115 -0.0013 21 6 5.1923 -1.8098 1.4191 22 1 4.6287 -1.3926 2.2405 23 6 6.2828 -2.6155 1.6702 24 7 6.6362 -2.8763 2.9098 25 14 7.2581 -3.3364 0.2495 26 1 6.6847 -4.6536 -0.1267 27 1 7.1908 -2.4166 -0.9144 28 1 8.6743 -3.5122 0.6603 29 7 2.2731 -1.0607 -0.0060 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9900 2.1597 -0.0004 34 1 5.6357 1.1297 -0.0013 35 1 4.6471 5.3711 -0.7723 36 1 4.9965 5.4773 0.9693 37 1 6.9339 5.9722 -1.3365 38 1 6.3523 7.1567 -0.1380 39 1 9.2009 3.6775 2.7320 40 1 6.0439 3.5062 2.1339 41 1 7.1272 2.4706 1.1679 42 1 5.6080 -1.0120 -0.5161 43 1 4.5495 -2.4431 -0.5148 44 1 7.4031 -3.4434 3.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535999713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:28 Heat of formation + Delta-G solvation = 107.555650 kcal Electronic energy + Delta-G solvation = -27824.534801 eV Core-core repulsion = 23972.805311 eV Total energy + Delta-G solvation = -3851.729490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67777 -40.90663 -39.43674 -36.30535 -34.80024 -33.77014 -32.46967 -32.12566 -30.67233 -29.66690 -29.17058 -27.91334 -26.31325 -24.86490 -23.34854 -22.37739 -21.22789 -20.89769 -19.73508 -19.29027 -18.88246 -17.79669 -17.22017 -16.97117 -16.39305 -15.62748 -15.25675 -15.09015 -14.71555 -14.25584 -14.19089 -13.96846 -13.77340 -13.47024 -13.16783 -12.97423 -12.83079 -12.75154 -12.58432 -12.33281 -12.08466 -11.99725 -11.89084 -11.73758 -11.19276 -11.14582 -11.02226 -10.85762 -10.50159 -10.47255 -10.24510 -9.88823 -9.77409 -9.55332 -9.47607 -8.87996 -8.58809 -7.95161 -7.47584 -6.35558 -4.39712 1.73697 2.22965 2.56580 2.67462 2.76671 3.06524 3.08491 3.12695 3.16855 3.56913 3.69520 4.12003 4.20846 4.53578 4.65272 4.66967 4.90956 4.91595 5.04425 5.20997 5.28608 5.30715 5.37218 5.50928 5.56344 5.62716 5.78452 5.82314 5.96642 6.00525 6.04304 6.05354 6.13316 6.17906 6.23426 6.33400 6.37205 6.48914 6.65319 6.74534 7.10740 7.18450 7.45641 7.50260 7.57070 7.77603 8.17398 8.32126 8.57932 8.71338 9.19351 10.76581 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.004176 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.343348 B = 6702.911356 C = 9180.337847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.293 4.293 4 C 0.306 3.694 5 N -0.640 5.640 6 C 0.525 3.475 7 O -0.512 6.512 8 C -0.097 4.097 9 H 0.103 0.897 10 C -0.096 4.096 11 C -0.038 4.038 12 C 0.083 3.917 13 N -0.293 5.293 14 N -0.486 5.486 15 H 0.439 0.561 16 C 0.067 3.933 17 C -0.232 4.232 18 C -0.036 4.036 19 N -0.345 5.345 20 C 0.230 3.770 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.081 3.919 24 N -0.883 5.883 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.265 1.265 28 H -0.280 1.280 29 N -0.285 5.285 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.179 0.821 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.050 0.950 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 15.742 -5.445 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.325 4.325 4 C 0.084 3.916 5 N -0.287 5.287 6 C 0.312 3.688 7 O -0.386 6.386 8 C -0.119 4.119 9 H 0.121 0.879 10 C -0.135 4.135 11 C -0.077 4.077 12 C -0.086 4.086 13 N -0.115 5.115 14 N -0.195 5.195 15 H 0.282 0.718 16 C -0.079 4.079 17 C -0.244 4.244 18 C -0.075 4.075 19 N -0.130 5.130 20 C 0.110 3.890 21 C -0.582 4.582 22 H 0.100 0.900 23 C -0.124 4.124 24 N -0.520 5.520 25 Si 0.698 3.302 26 H -0.195 1.195 27 H -0.190 1.190 28 H -0.205 1.205 29 N -0.110 5.110 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.181 0.819 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.196 0.804 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.488 15.729 -5.516 17.029 hybrid contribution 1.500 -0.746 0.012 1.675 sum 4.988 14.983 -5.504 16.723 Atomic orbital electron populations 1.20032 0.87471 1.02595 1.02056 1.22050 0.96559 0.91015 1.01423 1.21284 0.88992 1.00501 1.21716 1.17947 0.88252 0.83016 1.02400 1.42868 1.08040 1.05786 1.72007 1.20602 0.91395 0.81133 0.75717 1.90631 1.26821 1.73675 1.47456 1.21327 0.94073 0.95452 1.01037 0.87864 1.21407 0.96715 0.91110 1.04224 1.20163 0.90311 1.00380 0.96862 1.22402 0.94783 0.93096 0.98293 1.76981 1.06313 1.18730 1.09465 1.46317 1.20998 1.14762 1.37378 0.71767 1.22139 0.93640 0.91394 1.00731 1.19949 0.99441 0.98985 1.05978 1.19989 0.93850 0.96808 0.96833 1.48883 1.06142 1.02080 1.55878 1.19933 0.79340 0.90017 0.99677 1.21193 1.14100 1.32589 0.90340 0.90019 1.24810 0.96606 0.95210 0.95731 1.69875 1.26861 1.36595 1.18638 0.86929 0.79992 0.80734 0.82566 1.19482 1.19002 1.20515 1.77358 0.85838 1.21789 1.25980 0.91345 0.91431 0.91017 0.81939 0.74895 0.89531 0.90575 0.89614 0.89502 0.80368 0.90127 0.89946 0.94327 0.93235 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.00 0.38 -0.54 16 2 C 0.05 1.08 7.21 -82.45 -0.59 0.48 16 3 C -0.29 -5.84 9.58 -39.78 -0.38 -6.22 16 4 C 0.31 6.22 7.66 -153.15 -1.17 5.04 16 5 N -0.64 -10.54 5.32 -11.46 -0.06 -10.61 16 6 C 0.53 7.68 7.10 -10.99 -0.08 7.61 16 7 O -0.51 -8.75 12.90 5.54 0.07 -8.68 16 8 C -0.10 -1.05 2.47 -91.56 -0.23 -1.28 16 9 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 10 C -0.10 -0.95 4.64 -26.52 -0.12 -1.08 16 11 C -0.04 -0.34 6.31 -27.57 -0.17 -0.52 16 12 C 0.08 0.93 7.10 -82.35 -0.58 0.35 16 13 N -0.29 -3.47 12.68 33.75 0.43 -3.05 16 14 N -0.49 -4.51 7.37 30.35 0.22 -4.29 16 15 H 0.44 2.62 8.96 -182.43 -1.64 0.98 16 16 C 0.07 0.63 11.95 -17.36 -0.21 0.42 16 17 C -0.23 -2.53 5.89 -105.00 -0.62 -3.15 16 18 C -0.04 -0.40 5.40 -27.60 -0.15 -0.54 16 19 N -0.34 -7.79 3.60 -61.57 -0.22 -8.01 16 20 C 0.23 5.28 5.07 -5.19 -0.03 5.26 16 21 C -0.54 -14.54 9.94 -34.44 -0.34 -14.89 16 22 H 0.08 2.51 8.06 -52.49 -0.42 2.08 16 23 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 24 N -0.88 -25.13 13.96 55.43 0.77 -24.36 16 25 Si 0.87 19.19 27.47 -169.99 -4.67 14.52 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.27 -5.40 6.54 56.52 0.37 -5.03 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 29 N -0.28 -6.47 12.56 33.65 0.42 -6.05 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.16 3.14 5.83 -52.49 -0.31 2.83 16 34 H 0.41 6.19 7.60 -40.82 -0.31 5.88 16 35 H 0.09 0.85 7.68 -51.93 -0.40 0.45 16 36 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.08 0.87 7.86 -51.93 -0.41 0.47 16 42 H 0.04 0.81 6.56 -51.93 -0.34 0.46 16 43 H 0.05 1.15 7.57 -51.93 -0.39 0.76 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -34.28 364.38 -9.12 -43.41 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.18 Total: 8.62 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -4.40 Total: -7.00 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 1.57 Total: -56.36 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.67 Total: 14.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.28 -9.12 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535999713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.962 kcal (2) G-P(sol) polarization free energy of solvation -34.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds