Wall clock time and date at job start Sat Apr 11 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39756 * 125.83380 * 2 1 4 4 C 1.36109 * 107.82751 * 180.02562 * 3 2 1 5 5 N 1.39483 * 126.21937 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99541 * 359.97438 * 5 4 3 7 7 O 1.21297 * 120.00538 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99877 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.43068 * 59.99671 * 8 6 5 10 10 C 1.53024 * 109.43092 * 179.89960 * 8 6 5 11 11 C 1.53378 * 109.74911 * 191.80187 * 10 8 6 12 12 C 1.50945 * 108.19903 * 309.34470 * 11 10 8 13 13 N 1.30129 * 128.28329 * 196.66405 * 12 11 10 14 14 N 1.40311 * 108.12495 * 179.86363 * 13 12 11 15 15 H 0.97007 * 126.00722 * 180.02562 * 14 13 12 16 16 C 1.35199 * 107.99370 * 0.03528 * 14 13 12 17 17 C 1.34577 * 107.61465 * 0.04124 * 16 14 13 18 18 C 1.50857 * 128.34031 * 179.78151 * 17 16 14 19 19 N 1.35257 * 107.56798 * 359.97438 * 4 3 2 20 20 C 1.46506 * 126.04976 * 179.97438 * 19 4 3 21 21 C 1.50696 * 109.46871 * 89.99563 * 20 19 4 22 22 H 1.07999 * 120.00319 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99717 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 269.99586 * 25 23 21 27 27 H 1.48501 * 109.47293 * 30.00037 * 25 23 21 28 28 H 1.48504 * 109.46680 * 149.99835 * 25 23 21 29 29 N 1.30844 * 125.84159 * 180.32536 * 2 1 3 30 30 H 1.09005 * 109.47452 * 90.00391 * 1 2 3 31 31 H 1.09006 * 109.46986 * 210.00044 * 1 2 3 32 32 H 1.08994 * 109.47384 * 329.99644 * 1 2 3 33 33 H 1.07995 * 126.08953 * 359.97438 * 3 2 1 34 34 H 0.96992 * 120.00001 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.42148 * 311.88099 * 10 8 6 36 36 H 1.08997 * 109.42748 * 71.76796 * 10 8 6 37 37 H 1.08992 * 109.71495 * 69.02197 * 11 10 8 38 38 H 1.09000 * 109.71588 * 189.63061 * 11 10 8 39 39 H 1.07998 * 126.18918 * 180.02562 * 16 14 13 40 40 H 1.08999 * 109.75753 * 77.06222 * 18 17 16 41 41 H 1.09001 * 109.67342 * 316.42393 * 18 17 16 42 42 H 1.09005 * 109.46943 * 329.99883 * 20 19 4 43 43 H 1.09002 * 109.47064 * 210.00146 * 20 19 4 44 44 H 0.97001 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7512 1.5277 -0.0013 6 6 4.6155 2.8686 -0.0020 7 8 3.5094 3.3663 -0.0024 8 6 5.8381 3.7496 -0.0033 9 1 6.4322 3.5441 -0.8937 10 6 5.4074 5.2180 -0.0064 11 6 6.6176 6.1125 -0.3030 12 6 7.7362 5.7168 0.6301 13 7 8.8125 6.3851 0.9274 14 7 9.5604 5.6249 1.8392 15 1 10.4102 5.8793 2.2318 16 6 8.8887 4.4754 2.0744 17 6 7.7610 4.5052 1.3407 18 6 6.6771 3.4601 1.2478 19 7 3.6092 -0.6402 -0.0004 20 6 4.7871 -1.5115 -0.0013 21 6 5.1923 -1.8098 1.4191 22 1 4.6287 -1.3926 2.2405 23 6 6.2828 -2.6155 1.6702 24 7 6.6362 -2.8763 2.9098 25 14 7.2581 -3.3364 0.2495 26 1 6.6847 -4.6536 -0.1267 27 1 7.1908 -2.4166 -0.9144 28 1 8.6743 -3.5122 0.6603 29 7 2.2731 -1.0607 -0.0060 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.9900 2.1597 -0.0004 34 1 5.6357 1.1297 -0.0013 35 1 4.6471 5.3711 -0.7723 36 1 4.9965 5.4773 0.9693 37 1 6.9339 5.9722 -1.3365 38 1 6.3523 7.1567 -0.1380 39 1 9.2009 3.6775 2.7320 40 1 6.0439 3.5062 2.1339 41 1 7.1272 2.4706 1.1679 42 1 5.6080 -1.0120 -0.5161 43 1 4.5495 -2.4431 -0.5148 44 1 7.4031 -3.4434 3.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535999713.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:27 Heat of formation + Delta-G solvation = 84.557441 kcal Electronic energy + Delta-G solvation = -27825.532078 eV Core-core repulsion = 23972.805311 eV Total energy + Delta-G solvation = -3852.726767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.59097 -42.26928 -40.71680 -37.21878 -36.26260 -35.53248 -33.97116 -33.23505 -31.50185 -31.13456 -30.35414 -29.18915 -27.98162 -25.74440 -24.60321 -23.97087 -22.19895 -21.92932 -21.19151 -20.58815 -19.75242 -19.23569 -18.56104 -18.45303 -17.70524 -16.72282 -16.64878 -16.26006 -16.04671 -15.61159 -15.51245 -15.05031 -14.82146 -14.77795 -14.47329 -14.26439 -14.08404 -13.79466 -13.74015 -13.70249 -13.47300 -13.14790 -12.94973 -12.84902 -12.72987 -12.56491 -12.09164 -12.03027 -11.84967 -11.82380 -11.72071 -11.44221 -11.26263 -10.90538 -10.79312 -10.32454 -9.58465 -9.37954 -9.03723 -8.40157 -6.52210 0.80872 0.97761 1.30949 1.37834 1.38713 1.47461 1.66208 1.76628 2.01609 2.08373 2.23693 2.25942 2.91727 3.31493 3.60008 3.81366 3.82767 3.88708 4.06705 4.22122 4.31375 4.38948 4.48632 4.52100 4.60090 4.63776 4.70822 4.72788 4.78964 4.91240 4.92313 4.96983 5.00736 5.05808 5.14388 5.17045 5.21763 5.25499 5.26331 5.36205 5.70692 5.90123 6.02081 6.24374 6.37381 6.47564 6.52178 6.74215 6.97403 7.04700 7.12706 8.76070 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.004176 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.343348 B = 6702.911356 C = 9180.337847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.308 4.308 4 C 0.304 3.696 5 N -0.639 5.639 6 C 0.527 3.473 7 O -0.535 6.535 8 C -0.085 4.085 9 H 0.128 0.872 10 C -0.090 4.090 11 C -0.032 4.032 12 C 0.074 3.926 13 N -0.322 5.322 14 N -0.479 5.479 15 H 0.452 0.548 16 C 0.074 3.926 17 C -0.255 4.255 18 C -0.031 4.031 19 N -0.367 5.367 20 C 0.238 3.762 21 C -0.551 4.551 22 H 0.023 0.977 23 C 0.028 3.972 24 N -0.933 5.933 25 Si 0.946 3.054 26 H -0.271 1.271 27 H -0.232 1.232 28 H -0.273 1.273 29 N -0.331 5.331 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.421 0.579 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.204 0.796 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.423 16.550 -7.439 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.081 3.919 5 N -0.286 5.286 6 C 0.316 3.684 7 O -0.410 6.410 8 C -0.107 4.107 9 H 0.146 0.854 10 C -0.128 4.128 11 C -0.071 4.071 12 C -0.094 4.094 13 N -0.145 5.145 14 N -0.188 5.188 15 H 0.298 0.702 16 C -0.073 4.073 17 C -0.266 4.266 18 C -0.069 4.069 19 N -0.152 5.152 20 C 0.118 3.882 21 C -0.589 4.589 22 H 0.042 0.958 23 C -0.172 4.172 24 N -0.571 5.571 25 Si 0.768 3.232 26 H -0.196 1.196 27 H -0.155 1.155 28 H -0.198 1.198 29 N -0.156 5.156 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.259 0.741 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.221 0.779 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.645 16.583 -7.513 18.789 hybrid contribution 1.069 -0.914 0.773 1.606 sum 5.715 15.669 -6.740 17.989 Atomic orbital electron populations 1.20228 0.84021 1.03777 1.03961 1.22877 0.98716 0.90155 0.98811 1.21498 0.89140 1.00843 1.22447 1.18340 0.89753 0.82684 1.01094 1.43065 1.07365 1.06110 1.72093 1.21368 0.92323 0.80533 0.74211 1.90609 1.28230 1.73850 1.48324 1.21360 0.92292 0.94960 1.02054 0.85449 1.21352 0.97276 0.90544 1.03656 1.20193 0.89098 1.00508 0.97343 1.22725 0.95048 0.93089 0.98512 1.76927 1.07040 1.19777 1.10713 1.46366 1.21342 1.14425 1.36705 0.70202 1.22565 0.93001 0.91655 1.00034 1.20022 1.00129 0.99158 1.07303 1.19889 0.93752 0.97185 0.96121 1.48813 1.06051 1.02795 1.57581 1.19761 0.80544 0.90716 0.97198 1.21197 1.13921 1.32857 0.90915 0.95833 1.25759 0.97517 0.95122 0.98818 1.70030 1.27846 1.37671 1.21531 0.85750 0.77996 0.80026 0.79460 1.19577 1.15478 1.19762 1.77298 0.86338 1.23519 1.28398 0.88947 0.91087 0.88955 0.81347 0.74091 0.89260 0.91838 0.87955 0.88559 0.77889 0.91710 0.89712 0.91368 0.93313 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.23 0.74 -0.95 16 2 C 0.06 2.34 7.21 43.07 0.31 2.65 16 3 C -0.31 -12.23 9.58 22.14 0.21 -12.01 16 4 C 0.30 12.36 7.66 131.32 1.01 13.37 16 5 N -0.64 -20.68 5.32 -308.55 -1.64 -22.32 16 6 C 0.53 15.00 7.10 87.66 0.62 15.63 16 7 O -0.54 -18.01 12.90 -3.08 -0.04 -18.05 16 8 C -0.09 -1.72 2.47 -11.40 -0.03 -1.75 16 9 H 0.13 2.02 8.10 -2.39 -0.02 2.00 16 10 C -0.09 -1.65 4.64 30.73 0.14 -1.51 16 11 C -0.03 -0.52 6.31 30.05 0.19 -0.33 16 12 C 0.07 1.55 7.10 43.44 0.31 1.86 16 13 N -0.32 -7.15 12.68 -47.14 -0.60 -7.75 16 14 N -0.48 -8.03 7.37 -57.88 -0.43 -8.46 16 15 H 0.45 4.58 8.96 -213.18 -1.91 2.67 16 16 C 0.07 1.26 11.95 83.34 1.00 2.25 16 17 C -0.25 -5.17 5.89 -20.11 -0.12 -5.29 16 18 C -0.03 -0.64 5.40 30.03 0.16 -0.48 16 19 N -0.37 -16.74 3.60 -348.69 -1.26 -18.00 16 20 C 0.24 10.86 5.07 85.63 0.43 11.29 16 21 C -0.55 -30.24 9.94 25.60 0.25 -29.99 16 22 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 23 C 0.03 1.51 5.47 84.66 0.46 1.98 16 24 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 25 Si 0.95 38.61 27.47 68.60 1.88 40.50 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.23 -8.17 6.54 99.48 0.65 -7.52 16 28 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 29 N -0.33 -15.23 12.56 -47.45 -0.60 -15.82 16 30 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.17 6.44 5.83 -2.91 -0.02 6.43 16 34 H 0.42 12.18 7.60 -92.71 -0.70 11.47 16 35 H 0.09 1.62 7.68 -2.39 -0.02 1.60 16 36 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 41 H 0.08 1.70 7.86 -2.39 -0.02 1.69 16 42 H 0.07 2.69 6.56 -2.38 -0.02 2.67 16 43 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 44 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -76.92 364.38 1.71 -75.21 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -1.61 Total: 32.04 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.70 Total: -3.29 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -4.22 Total: -126.41 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.04 Total: -18.05 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.88 Total: 40.50 kcal Total: -76.92 1.71 -75.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535999713.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.767 kcal (2) G-P(sol) polarization free energy of solvation -76.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds