Wall clock time and date at job start Sat Apr 11 2020 02:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39724 * 125.78240 * 2 1 4 4 C 1.36151 * 107.85841 * 180.15301 * 3 2 1 5 5 N 1.39359 * 126.25961 * 179.88120 * 4 3 2 6 6 C 1.34776 * 120.00317 * 359.68844 * 5 4 3 7 7 O 1.21539 * 119.99966 * 0.02562 * 6 5 4 8 8 C 1.48096 * 120.00112 * 180.02562 * 6 5 4 9 9 N 1.33053 * 120.09563 * 5.80412 * 8 6 5 10 10 C 1.31776 * 119.91789 * 179.71242 * 9 8 6 11 11 C 1.50702 * 119.93441 * 180.25844 * 10 9 8 12 12 C 1.38768 * 120.12744 * 0.52521 * 10 9 8 13 13 C 1.50707 * 119.90079 * 179.75688 * 12 10 9 14 14 N 1.32112 * 120.19909 * 359.47045 * 12 10 9 15 15 C 1.32105 * 120.07358 * 0.26437 * 14 12 10 16 16 C 1.50693 * 120.06337 * 179.97438 * 15 14 12 17 17 N 1.35806 * 107.47313 * 359.62000 * 4 3 2 18 18 C 1.46504 * 126.09365 * 180.20947 * 17 4 3 19 19 C 1.50701 * 109.47644 * 89.99704 * 18 17 4 20 20 H 1.08000 * 119.99484 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00306 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00041 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99930 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47277 * 89.99612 * 23 21 19 25 25 H 1.48497 * 109.47096 * 209.99862 * 23 21 19 26 26 H 1.48508 * 109.46914 * 329.99703 * 23 21 19 27 27 N 1.30839 * 125.77303 * 179.72603 * 2 1 3 28 28 H 1.08994 * 109.47143 * 270.25444 * 1 2 3 29 29 H 1.09001 * 109.46737 * 30.24684 * 1 2 3 30 30 H 1.09000 * 109.47514 * 150.25176 * 1 2 3 31 31 H 1.08001 * 126.06661 * 0.03454 * 3 2 1 32 32 H 0.97002 * 119.99813 * 179.68775 * 5 4 3 33 33 H 1.09007 * 109.47014 * 270.26294 * 11 10 9 34 34 H 1.08994 * 109.47261 * 30.26753 * 11 10 9 35 35 H 1.08997 * 109.47017 * 150.26827 * 11 10 9 36 36 H 1.08994 * 109.46483 * 269.72250 * 13 12 10 37 37 H 1.08999 * 109.47120 * 149.72107 * 13 12 10 38 38 H 1.09002 * 109.47150 * 29.72179 * 13 12 10 39 39 H 1.09000 * 109.47348 * 96.71284 * 16 15 14 40 40 H 1.08998 * 109.47029 * 216.70986 * 16 15 14 41 41 H 1.09002 * 109.47269 * 336.71302 * 16 15 14 42 42 H 1.09005 * 109.46942 * 209.99702 * 18 17 4 43 43 H 1.08997 * 109.47012 * 329.99482 * 18 17 4 44 44 H 0.96999 * 120.00052 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6194 0.7145 -0.0035 5 7 4.7495 1.5300 -0.0070 6 6 4.6129 2.8708 -0.0135 7 8 3.5042 3.3688 -0.0158 8 6 5.8139 3.7374 -0.0178 9 7 7.0251 3.1986 -0.1317 10 6 8.0909 3.9734 -0.1408 11 6 9.4626 3.3639 -0.2756 12 6 7.9531 5.3490 -0.0209 13 6 9.1759 6.2299 -0.0265 14 7 6.7528 5.8892 0.0923 15 6 5.6785 5.1203 0.0972 16 6 4.3096 5.7367 0.2269 17 7 3.6087 -0.6435 0.0030 18 6 4.7858 -1.5158 0.0066 19 6 5.1903 -1.8082 1.4285 20 1 4.6267 -1.3867 2.2477 21 6 6.2791 -2.6145 1.6837 22 7 6.6324 -2.8692 2.9246 23 14 7.2535 -3.3441 0.2667 24 1 8.3457 -2.4129 -0.1144 25 1 7.8353 -4.6450 0.6840 26 1 6.3540 -3.5543 -0.8961 27 7 2.2719 -1.0615 0.0051 28 1 -0.3633 0.0046 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.9875 2.1598 0.0005 32 1 5.6343 1.1326 -0.0047 33 1 9.8571 3.1343 0.7143 34 1 9.3970 2.4476 -0.8621 35 1 10.1259 4.0691 -0.7764 36 1 9.5318 6.3636 0.9950 37 1 8.9225 7.2005 -0.4530 38 1 9.9576 5.7626 -0.6255 39 1 3.8689 5.8548 -0.7630 40 1 3.6753 5.0889 0.8320 41 1 4.3943 6.7123 0.7057 42 1 4.5474 -2.4497 -0.5027 43 1 5.6072 -1.0197 -0.5102 44 1 7.3982 -3.4368 3.1041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546621047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:35 Heat of formation + Delta-G solvation = 68.640117 kcal Electronic energy + Delta-G solvation = -27866.429861 eV Core-core repulsion = 24013.012867 eV Total energy + Delta-G solvation = -3853.416994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.86849 -42.25584 -40.49023 -36.70122 -36.01719 -35.54835 -35.46883 -34.01738 -31.31176 -31.17280 -30.47636 -29.48299 -28.03427 -27.37459 -24.85172 -24.47081 -23.75980 -22.56376 -21.30240 -21.07096 -19.41522 -19.30136 -18.75104 -17.76847 -17.24625 -16.90811 -16.51853 -16.27726 -16.10225 -15.81575 -15.45043 -14.97215 -14.68953 -14.44575 -14.39384 -14.22368 -14.00886 -13.87415 -13.84275 -13.69854 -13.55709 -13.36154 -13.19722 -13.14964 -12.95387 -12.87361 -12.58098 -12.50562 -12.19755 -11.95714 -11.88970 -11.81976 -11.57027 -11.09886 -10.94465 -10.29972 -10.08001 -9.65618 -9.14186 -8.45632 -6.58223 -0.88039 -0.17074 0.74621 1.12522 1.30187 1.33975 1.43714 1.53991 1.95973 2.02469 2.21976 2.46974 2.61241 2.83805 2.85573 3.13892 3.37293 3.71432 3.73918 3.87080 4.10905 4.14627 4.39813 4.51168 4.52186 4.61067 4.65509 4.66154 4.72307 4.73777 4.79126 4.85324 4.89979 4.90561 4.97276 5.06377 5.10304 5.15480 5.19673 5.26086 5.43993 5.82454 5.91340 5.96850 6.05938 6.22970 6.44281 6.50964 6.71724 6.91418 7.06502 8.71016 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009096 B = 0.004623 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3077.661442 B = 6054.754755 C = 8694.336873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.062 3.938 3 C -0.295 4.295 4 C 0.295 3.705 5 N -0.625 5.625 6 C 0.584 3.416 7 O -0.504 6.504 8 C -0.003 4.003 9 N -0.430 5.430 10 C 0.066 3.934 11 C -0.104 4.104 12 C 0.121 3.879 13 C -0.106 4.106 14 N -0.454 5.454 15 C 0.139 3.861 16 C -0.101 4.101 17 N -0.369 5.369 18 C 0.240 3.760 19 C -0.555 4.555 20 H 0.022 0.978 21 C 0.026 3.974 22 N -0.933 5.933 23 Si 0.948 3.052 24 H -0.247 1.247 25 H -0.274 1.274 26 H -0.247 1.247 27 N -0.322 5.322 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.177 0.823 32 H 0.422 0.578 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 19.162 -9.915 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.327 4.327 4 C 0.073 3.927 5 N -0.271 5.271 6 C 0.371 3.629 7 O -0.378 6.378 8 C -0.142 4.142 9 N -0.148 5.148 10 C -0.079 4.079 11 C -0.162 4.162 12 C -0.023 4.023 13 C -0.163 4.163 14 N -0.170 5.170 15 C 0.001 3.999 16 C -0.159 4.159 17 N -0.154 5.154 18 C 0.120 3.880 19 C -0.593 4.593 20 H 0.040 0.960 21 C -0.174 4.174 22 N -0.571 5.571 23 Si 0.768 3.232 24 H -0.171 1.171 25 H -0.199 1.199 26 H -0.171 1.171 27 N -0.147 5.147 28 H 0.102 0.898 29 H 0.119 0.881 30 H 0.096 0.904 31 H 0.194 0.806 32 H 0.260 0.740 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.843 18.085 -9.787 21.126 hybrid contribution 0.879 -0.385 0.273 0.998 sum 5.723 17.700 -9.514 20.894 Atomic orbital electron populations 1.20256 0.83535 1.04378 1.03767 1.22924 0.98881 0.89858 0.98680 1.21550 0.88551 1.01251 1.21311 1.18398 0.89194 0.82801 1.02277 1.42623 1.08168 1.05624 1.70696 1.17784 0.88383 0.80391 0.76356 1.90651 1.25476 1.73227 1.48426 1.21358 0.91773 0.93274 1.07761 1.68126 0.98402 1.40480 1.07744 1.22834 0.96509 0.91566 0.97031 1.20991 0.87966 1.02446 1.04751 1.23262 0.95308 0.93486 0.90263 1.21081 0.90978 0.98700 1.05505 1.68464 0.98277 1.38176 1.12060 1.22502 0.97703 0.89005 0.90715 1.21039 0.88430 1.01683 1.04705 1.48973 1.06189 1.02486 1.57791 1.19711 0.80480 0.90605 0.97186 1.21203 1.14317 1.32946 0.90844 0.95973 1.25810 0.97420 0.95135 0.99049 1.70026 1.27843 1.37755 1.21454 0.85727 0.79570 0.78978 0.78923 1.17087 1.19943 1.17080 1.77293 0.86002 1.23596 1.27785 0.89811 0.88138 0.90439 0.80588 0.73982 0.88681 0.90587 0.86040 0.87657 0.89163 0.86641 0.88639 0.88802 0.89170 0.92727 0.92407 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 10.44 71.24 0.74 -0.92 16 2 C 0.06 2.47 7.20 43.07 0.31 2.78 16 3 C -0.30 -11.99 9.58 22.14 0.21 -11.78 16 4 C 0.29 12.96 7.68 131.19 1.01 13.97 16 5 N -0.62 -24.47 5.40 -310.58 -1.68 -26.15 16 6 C 0.58 20.54 7.71 86.86 0.67 21.21 16 7 O -0.50 -17.71 10.46 -3.84 -0.04 -17.75 16 8 C 0.00 -0.09 6.75 41.86 0.28 0.19 16 9 N -0.43 -12.65 9.65 -172.54 -1.67 -14.32 16 10 C 0.07 1.45 6.79 42.69 0.29 1.74 16 11 C -0.10 -1.44 9.78 71.24 0.70 -0.74 16 12 C 0.12 2.33 6.79 42.65 0.29 2.62 16 13 C -0.11 -0.93 9.79 71.24 0.70 -0.23 16 14 N -0.45 -10.83 10.34 -170.46 -1.76 -12.60 16 15 C 0.14 3.75 6.82 42.80 0.29 4.04 16 16 C -0.10 -2.33 8.88 71.23 0.63 -1.70 16 17 N -0.37 -17.86 3.62 -348.33 -1.26 -19.12 16 18 C 0.24 11.84 5.09 85.63 0.44 12.27 16 19 C -0.56 -32.44 9.94 25.60 0.25 -32.19 16 20 H 0.02 1.51 8.06 -2.91 -0.02 1.48 16 21 C 0.03 1.49 5.47 84.65 0.46 1.95 16 22 N -0.93 -56.82 13.96 21.44 0.30 -56.52 16 23 Si 0.95 40.84 27.47 68.60 1.88 42.72 16 24 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.25 -9.98 6.54 99.48 0.65 -9.33 16 27 N -0.32 -15.23 12.56 -47.47 -0.60 -15.83 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.18 6.62 5.83 -2.91 -0.02 6.60 16 32 H 0.42 16.40 7.36 -92.71 -0.68 15.72 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.12 0.71 5.94 -2.39 -0.01 0.70 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.38 5.93 -2.39 -0.01 0.36 16 39 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.09 2.46 5.85 -2.39 -0.01 2.44 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 2.67 7.20 -2.38 -0.02 2.65 16 43 H 0.06 2.56 6.95 -2.39 -0.02 2.54 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.61 367.62 2.78 -74.84 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.32 Total: 31.50 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 7.28 Total: 13.22 kcal Atomic # 7 Polarization: -137.87 SS G_CDS: -6.66 Total: -144.53 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.04 Total: -17.75 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.88 Total: 42.72 kcal Total: -77.61 2.78 -74.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546621047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.476 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds