Wall clock time and date at job start Sat Apr 11 2020 02:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34997 * 125.52560 * 2 1 4 4 C 1.41173 * 108.24482 * 179.97438 * 3 2 1 5 5 N 1.32956 * 126.38168 * 180.02562 * 4 3 2 6 6 C 1.33877 * 119.99555 * 359.97438 * 5 4 3 7 7 O 1.21905 * 120.00470 * 0.02562 * 6 5 4 8 8 C 1.47697 * 119.99642 * 180.02562 * 6 5 4 9 9 C 1.36461 * 126.12930 * 179.97438 * 8 6 5 10 10 N 1.35527 * 106.63850 * 179.97438 * 9 8 6 11 11 C 1.36269 * 107.65677 * 0.06413 * 10 9 8 12 12 N 1.29819 * 108.86841 * 359.66606 * 11 10 9 13 13 C 1.51096 * 123.87913 * 179.87604 * 11 10 9 14 14 C 1.53395 * 108.18712 * 344.04980 * 13 11 10 15 15 C 1.53128 * 109.26688 * 48.95458 * 14 13 11 16 16 C 1.46539 * 127.65128 * 180.11773 * 10 9 8 17 17 N 1.37451 * 107.24326 * 359.97438 * 4 3 2 18 18 H 0.96994 * 126.36549 * 180.02562 * 17 4 3 19 19 N 1.36435 * 125.52746 * 180.02562 * 2 1 3 20 20 C 1.46504 * 125.85016 * 359.73647 * 19 2 1 21 21 C 1.50700 * 109.46872 * 85.00164 * 20 19 2 22 22 H 1.07998 * 120.00391 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99885 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00000 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47298 * 89.99672 * 25 23 21 27 27 H 1.48496 * 109.47428 * 209.99852 * 25 23 21 28 28 H 1.48504 * 109.46995 * 330.00019 * 25 23 21 29 29 H 1.08997 * 109.47588 * 269.99584 * 1 2 3 30 30 H 1.08995 * 109.47086 * 30.00392 * 1 2 3 31 31 H 1.09000 * 109.47108 * 150.00105 * 1 2 3 32 32 H 1.08001 * 125.87872 * 0.02562 * 3 2 1 33 33 H 1.07994 * 126.67802 * 359.95204 * 9 8 6 34 34 H 1.08993 * 109.72361 * 224.36995 * 13 11 10 35 35 H 1.09000 * 109.75340 * 103.73988 * 13 11 10 36 36 H 1.09006 * 109.50086 * 289.01603 * 14 13 11 37 37 H 1.09000 * 109.50566 * 168.89600 * 14 13 11 38 38 H 1.09008 * 109.46002 * 170.20982 * 15 14 13 39 39 H 1.09005 * 109.46317 * 50.24909 * 15 14 13 40 40 H 1.08999 * 109.58520 * 282.60906 * 16 10 9 41 41 H 1.09002 * 109.58080 * 43.03014 * 16 10 9 42 42 H 1.09002 * 109.47052 * 204.99953 * 20 19 2 43 43 H 1.08993 * 109.47588 * 325.00123 * 20 19 2 44 44 H 0.96994 * 119.99986 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0987 0.0000 4 6 3.6394 0.6793 0.0006 5 7 4.7104 1.4671 0.0013 6 6 4.5625 2.7977 0.0009 7 8 3.4460 3.2870 0.0004 8 6 5.7523 3.6729 0.0011 9 6 5.7473 5.0375 0.0002 10 7 7.0444 5.4303 0.0013 11 6 7.8163 4.3073 0.0013 12 7 7.0418 3.2655 0.0075 13 6 9.3272 4.3238 -0.0003 14 6 9.7902 5.7299 -0.4023 15 6 9.0357 6.7683 0.4326 16 6 7.5649 6.8001 0.0034 17 7 3.6385 -0.6952 0.0015 18 1 4.4192 -1.2708 0.0025 19 7 2.2998 -1.1104 -0.0005 20 6 1.8320 -2.4987 0.0043 21 6 1.5490 -2.9383 -1.4091 22 1 1.7026 -2.2524 -2.2290 23 6 1.0949 -4.2166 -1.6556 24 7 0.9092 -5.0524 -0.6573 25 14 0.7447 -4.7618 -3.4076 26 1 1.9734 -5.3515 -3.9975 27 1 -0.3386 -5.7774 -3.4029 28 1 0.3211 -3.5899 -4.2154 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9470 2.1223 0.0004 33 1 4.8788 5.6794 -0.0014 34 1 9.7022 3.5939 -0.7176 35 1 9.6993 4.0849 0.9960 36 1 9.5828 5.8927 -1.4600 37 1 10.8609 5.8259 -0.2218 38 1 9.4805 7.7514 0.2779 39 1 9.1005 6.5026 1.4878 40 1 7.4855 7.2227 -0.9982 41 1 6.9925 7.4073 0.7048 42 1 2.6002 -3.1394 0.4372 43 1 0.9205 -2.5729 0.5973 44 1 0.5901 -5.9518 -0.8308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548910562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:39 Heat of formation + Delta-G solvation = 115.104898 kcal Electronic energy + Delta-G solvation = -26786.805098 eV Core-core repulsion = 22935.402968 eV Total energy + Delta-G solvation = -3851.402130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13875 -40.78884 -38.15839 -36.57167 -34.26165 -33.37861 -33.04163 -32.14496 -30.68414 -29.86238 -28.52330 -27.44538 -26.77352 -24.85920 -23.49740 -22.56749 -22.30379 -20.90722 -19.56786 -19.07709 -18.80809 -17.16952 -16.91322 -16.56691 -16.08164 -15.50663 -15.13680 -14.84282 -14.71908 -14.54141 -14.40353 -14.04797 -13.82591 -13.56283 -13.42049 -13.36644 -12.78951 -12.71252 -12.68956 -12.38198 -11.96695 -11.92432 -11.75503 -11.50428 -11.41506 -11.32447 -11.26752 -11.03133 -10.48504 -10.29597 -9.78079 -9.48103 -9.37185 -9.34668 -8.88534 -8.76742 -8.21283 -8.17732 -6.83155 -6.44452 -4.61502 1.56559 2.10261 2.17112 2.70518 2.82023 3.08502 3.16351 3.20593 3.48359 4.08754 4.10862 4.21214 4.29234 4.35581 4.43449 4.83849 4.84756 4.87140 4.95676 5.06899 5.07906 5.09911 5.12914 5.30248 5.40077 5.50926 5.63267 5.63882 5.76557 5.80311 5.85509 5.92660 6.18910 6.29533 6.31044 6.51061 6.58474 6.64484 6.82799 6.90012 7.22161 7.42790 7.55244 7.59507 7.76578 8.07496 8.22632 8.41846 8.49987 9.08737 9.54308 10.56323 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.002196 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.641467 B =12748.482269 C =13340.859487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.334 4.334 4 C 0.470 3.530 5 N -0.674 5.674 6 C 0.575 3.425 7 O -0.587 6.587 8 C -0.007 4.007 9 C 0.004 3.996 10 N -0.462 5.462 11 C 0.189 3.811 12 N -0.433 5.433 13 C -0.030 4.030 14 C -0.125 4.125 15 C -0.134 4.134 16 C 0.104 3.896 17 N -0.467 5.467 18 H 0.445 0.555 19 N -0.341 5.341 20 C 0.254 3.746 21 C -0.555 4.555 22 H 0.069 0.931 23 C 0.070 3.930 24 N -0.887 5.887 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.270 1.270 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.182 0.818 33 H 0.183 0.817 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.002 19.214 2.714 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 C -0.366 4.366 4 C 0.220 3.780 5 N -0.436 5.436 6 C 0.361 3.639 7 O -0.469 6.469 8 C -0.137 4.137 9 C -0.133 4.133 10 N -0.146 5.146 11 C -0.074 4.074 12 N -0.151 5.151 13 C -0.069 4.069 14 C -0.163 4.163 15 C -0.172 4.172 16 C -0.018 4.018 17 N -0.189 5.189 18 H 0.293 0.707 19 N -0.127 5.127 20 C 0.138 3.862 21 C -0.593 4.593 22 H 0.088 0.912 23 C -0.135 4.135 24 N -0.523 5.523 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.194 1.194 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.199 0.801 33 H 0.200 0.800 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.455 17.918 2.780 21.447 hybrid contribution -0.624 0.351 -0.935 1.178 sum 10.831 18.269 1.845 21.318 Atomic orbital electron populations 1.20641 0.86483 1.04991 1.03563 1.21312 0.94442 0.85606 0.92459 1.22277 0.91289 1.00224 1.22855 1.19208 0.91545 0.82328 0.84928 1.68941 1.27374 1.04782 1.42459 1.17664 0.84925 0.85478 0.75784 1.90606 1.25772 1.79435 1.51131 1.20366 0.91793 0.90444 1.11089 1.22508 0.86477 0.96526 1.07752 1.45431 1.06190 1.07685 1.55301 1.23594 0.95581 0.80850 1.07378 1.70275 1.00947 1.27670 1.16222 1.20153 0.85193 0.97871 1.03686 1.21673 1.00558 0.93748 1.00340 1.21888 0.93153 1.00894 1.01277 1.21970 0.95811 0.80961 1.03097 1.44532 0.98782 1.05203 1.70431 0.70730 1.47900 0.92777 1.08135 1.63897 1.20022 0.96450 0.70284 0.99486 1.21392 1.47430 0.98736 0.91740 0.91248 1.24950 0.94331 0.95812 0.98400 1.69899 1.44164 1.06926 1.31334 0.86306 0.78334 0.78709 0.83149 1.20205 1.20707 1.19420 0.89893 0.89381 0.89045 0.80071 0.80016 0.88710 0.89443 0.91142 0.90067 0.89415 0.90565 0.89838 0.89248 0.93110 0.91492 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.92 36.01 0.36 -1.09 16 2 C 0.19 3.53 6.92 -81.70 -0.57 2.96 16 3 C -0.33 -6.82 9.41 -39.62 -0.37 -7.20 16 4 C 0.47 10.15 8.07 -155.26 -1.25 8.89 16 5 N -0.67 -15.38 10.51 -12.25 -0.13 -15.51 16 6 C 0.58 12.89 7.73 -12.80 -0.10 12.79 16 7 O -0.59 -13.46 13.81 5.00 0.07 -13.39 16 8 C -0.01 -0.13 6.98 -83.14 -0.58 -0.71 16 9 C 0.00 0.07 11.37 -16.56 -0.19 -0.12 16 10 N -0.46 -5.73 3.13 -113.30 -0.35 -6.09 16 11 C 0.19 2.68 7.65 -154.65 -1.18 1.49 16 12 N -0.43 -8.17 11.26 -7.07 -0.08 -8.25 16 13 C -0.03 -0.28 6.33 -27.49 -0.17 -0.45 16 14 C -0.13 -0.75 5.95 -26.46 -0.16 -0.91 16 15 C -0.13 -0.71 5.93 -26.54 -0.16 -0.87 16 16 C 0.10 0.74 6.97 -3.89 -0.03 0.72 16 17 N -0.47 -9.27 7.38 31.33 0.23 -9.03 16 18 H 0.45 7.91 8.96 -182.56 -1.64 6.27 16 19 N -0.34 -6.84 3.63 -58.03 -0.21 -7.06 16 20 C 0.25 5.52 5.71 -5.19 -0.03 5.49 16 21 C -0.55 -13.48 9.39 -34.44 -0.32 -13.80 16 22 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -22.77 13.29 55.43 0.74 -22.03 16 25 Si 0.91 19.57 29.54 -169.99 -5.02 14.55 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 28 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.43 7.81 -51.93 -0.41 1.02 16 32 H 0.18 3.79 5.77 -52.49 -0.30 3.48 16 33 H 0.18 2.39 8.06 -52.49 -0.42 1.96 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.26 8.14 -51.92 -0.42 -0.16 16 39 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.45 7.89 -51.93 -0.41 1.04 16 44 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.44 371.79 -11.38 -44.82 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.37 Total: 7.54 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -4.85 Total: 8.84 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: 0.19 Total: -67.97 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.07 Total: -13.39 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.44 -11.38 -44.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548910562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.923 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds