Wall clock time and date at job start Sat Apr 11 2020 02:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34997 * 125.52560 * 2 1 4 4 C 1.41173 * 108.24482 * 179.97438 * 3 2 1 5 5 N 1.32956 * 126.38168 * 180.02562 * 4 3 2 6 6 C 1.33877 * 119.99555 * 359.97438 * 5 4 3 7 7 O 1.21905 * 120.00470 * 0.02562 * 6 5 4 8 8 C 1.47697 * 119.99642 * 180.02562 * 6 5 4 9 9 C 1.36461 * 126.12930 * 179.97438 * 8 6 5 10 10 N 1.35527 * 106.63850 * 179.97438 * 9 8 6 11 11 C 1.36269 * 107.65677 * 0.06413 * 10 9 8 12 12 N 1.29819 * 108.86841 * 359.66606 * 11 10 9 13 13 C 1.51096 * 123.87913 * 179.87604 * 11 10 9 14 14 C 1.53395 * 108.18712 * 344.04980 * 13 11 10 15 15 C 1.53128 * 109.26688 * 48.95458 * 14 13 11 16 16 C 1.46539 * 127.65128 * 180.11773 * 10 9 8 17 17 N 1.37451 * 107.24326 * 359.97438 * 4 3 2 18 18 H 0.96994 * 126.36549 * 180.02562 * 17 4 3 19 19 N 1.36435 * 125.52746 * 180.02562 * 2 1 3 20 20 C 1.46504 * 125.85016 * 359.73647 * 19 2 1 21 21 C 1.50700 * 109.46872 * 85.00164 * 20 19 2 22 22 H 1.07998 * 120.00391 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99885 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00000 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47298 * 89.99672 * 25 23 21 27 27 H 1.48496 * 109.47428 * 209.99852 * 25 23 21 28 28 H 1.48504 * 109.46995 * 330.00019 * 25 23 21 29 29 H 1.08997 * 109.47588 * 269.99584 * 1 2 3 30 30 H 1.08995 * 109.47086 * 30.00392 * 1 2 3 31 31 H 1.09000 * 109.47108 * 150.00105 * 1 2 3 32 32 H 1.08001 * 125.87872 * 0.02562 * 3 2 1 33 33 H 1.07994 * 126.67802 * 359.95204 * 9 8 6 34 34 H 1.08993 * 109.72361 * 224.36995 * 13 11 10 35 35 H 1.09000 * 109.75340 * 103.73988 * 13 11 10 36 36 H 1.09006 * 109.50086 * 289.01603 * 14 13 11 37 37 H 1.09000 * 109.50566 * 168.89600 * 14 13 11 38 38 H 1.09008 * 109.46002 * 170.20982 * 15 14 13 39 39 H 1.09005 * 109.46317 * 50.24909 * 15 14 13 40 40 H 1.08999 * 109.58520 * 282.60906 * 16 10 9 41 41 H 1.09002 * 109.58080 * 43.03014 * 16 10 9 42 42 H 1.09002 * 109.47052 * 204.99953 * 20 19 2 43 43 H 1.08993 * 109.47588 * 325.00123 * 20 19 2 44 44 H 0.96994 * 119.99986 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0987 0.0000 4 6 3.6394 0.6793 0.0006 5 7 4.7104 1.4671 0.0013 6 6 4.5625 2.7977 0.0009 7 8 3.4460 3.2870 0.0004 8 6 5.7523 3.6729 0.0011 9 6 5.7473 5.0375 0.0002 10 7 7.0444 5.4303 0.0013 11 6 7.8163 4.3073 0.0013 12 7 7.0418 3.2655 0.0075 13 6 9.3272 4.3238 -0.0003 14 6 9.7902 5.7299 -0.4023 15 6 9.0357 6.7683 0.4326 16 6 7.5649 6.8001 0.0034 17 7 3.6385 -0.6952 0.0015 18 1 4.4192 -1.2708 0.0025 19 7 2.2998 -1.1104 -0.0005 20 6 1.8320 -2.4987 0.0043 21 6 1.5490 -2.9383 -1.4091 22 1 1.7026 -2.2524 -2.2290 23 6 1.0949 -4.2166 -1.6556 24 7 0.9092 -5.0524 -0.6573 25 14 0.7447 -4.7618 -3.4076 26 1 1.9734 -5.3515 -3.9975 27 1 -0.3386 -5.7774 -3.4029 28 1 0.3211 -3.5899 -4.2154 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9470 2.1223 0.0004 33 1 4.8788 5.6794 -0.0014 34 1 9.7022 3.5939 -0.7176 35 1 9.6993 4.0849 0.9960 36 1 9.5828 5.8927 -1.4600 37 1 10.8609 5.8259 -0.2218 38 1 9.4805 7.7514 0.2779 39 1 9.1005 6.5026 1.4878 40 1 7.4855 7.2227 -0.9982 41 1 6.9925 7.4073 0.7048 42 1 2.6002 -3.1394 0.4372 43 1 0.9205 -2.5729 0.5973 44 1 0.5901 -5.9518 -0.8308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548910562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:38 Heat of formation + Delta-G solvation = 93.747697 kcal Electronic energy + Delta-G solvation = -26787.731216 eV Core-core repulsion = 22935.402968 eV Total energy + Delta-G solvation = -3852.328248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.23262 -42.39652 -39.73538 -37.32884 -36.01428 -34.80246 -34.26559 -33.69242 -32.35722 -30.88121 -29.50014 -28.81962 -28.50297 -25.95151 -24.88330 -24.04903 -23.04856 -22.38409 -21.08436 -20.28977 -19.88560 -18.91240 -18.41349 -17.86719 -17.07403 -16.91975 -16.76951 -16.44257 -16.16612 -15.58951 -15.40216 -15.11980 -14.90938 -14.70405 -14.51807 -14.37261 -14.34994 -14.26909 -14.00646 -13.72508 -13.67415 -13.22170 -12.94079 -12.75458 -12.70966 -12.30456 -12.04686 -12.03424 -11.94180 -11.84810 -11.10454 -11.07693 -10.86243 -10.77726 -10.54637 -10.33313 -9.90439 -9.40162 -8.58210 -8.26104 -6.56610 0.01391 0.53862 0.87341 1.37386 1.40970 1.43931 1.50728 1.79259 2.04097 2.30061 2.72163 2.94098 3.25085 3.29684 3.51189 3.67440 3.73297 3.81569 3.88995 4.12759 4.22796 4.29281 4.37033 4.44696 4.49485 4.57325 4.75207 4.78149 4.81489 4.88712 4.90018 4.94921 5.00002 5.00436 5.09390 5.15949 5.25925 5.31447 5.33504 5.50567 5.61059 5.69208 5.97673 6.11311 6.25559 6.41453 6.59547 6.75625 7.10128 7.16762 7.90184 8.66177 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023811 B = 0.002196 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.641467 B =12748.482269 C =13340.859487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.200 3.800 3 C -0.347 4.347 4 C 0.453 3.547 5 N -0.696 5.696 6 C 0.562 3.438 7 O -0.607 6.607 8 C -0.061 4.061 9 C 0.023 3.977 10 N -0.452 5.452 11 C 0.194 3.806 12 N -0.487 5.487 13 C -0.033 4.033 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.091 3.909 17 N -0.467 5.467 18 H 0.451 0.549 19 N -0.345 5.345 20 C 0.267 3.733 21 C -0.563 4.563 22 H 0.056 0.944 23 C 0.032 3.968 24 N -0.911 5.911 25 Si 0.963 3.037 26 H -0.278 1.278 27 H -0.274 1.274 28 H -0.270 1.270 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.202 0.798 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.766 21.369 2.410 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.073 3.927 3 C -0.379 4.379 4 C 0.203 3.797 5 N -0.459 5.459 6 C 0.350 3.650 7 O -0.491 6.491 8 C -0.190 4.190 9 C -0.117 4.117 10 N -0.134 5.134 11 C -0.071 4.071 12 N -0.206 5.206 13 C -0.072 4.072 14 C -0.157 4.157 15 C -0.167 4.167 16 C -0.029 4.029 17 N -0.189 5.189 18 H 0.299 0.701 19 N -0.131 5.131 20 C 0.150 3.850 21 C -0.601 4.601 22 H 0.075 0.925 23 C -0.171 4.171 24 N -0.549 5.549 25 Si 0.788 3.212 26 H -0.204 1.204 27 H -0.199 1.199 28 H -0.194 1.194 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.219 0.781 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.248 20.098 2.480 23.666 hybrid contribution -0.788 -0.239 -0.817 1.160 sum 11.461 19.859 1.663 22.989 Atomic orbital electron populations 1.20837 0.83300 1.05710 1.05516 1.21929 0.96140 0.84391 0.90255 1.22207 0.91097 1.00472 1.24103 1.19450 0.92132 0.82794 0.85304 1.68994 1.28142 1.05485 1.43261 1.18180 0.85968 0.85632 0.75250 1.90550 1.26597 1.79630 1.52351 1.20260 0.91529 0.91823 1.15380 1.22715 0.88338 0.95256 1.05414 1.45759 1.04876 1.09550 1.53251 1.24422 0.97310 0.80475 1.04855 1.70146 1.01269 1.30495 1.18667 1.20433 0.81870 1.00493 1.04396 1.21692 1.02211 0.91420 1.00340 1.21943 0.91578 1.02408 1.00769 1.22513 0.97339 0.78073 1.04957 1.44535 0.99078 1.04883 1.70437 0.70077 1.47862 0.93013 1.08101 1.64163 1.19754 0.96212 0.70754 0.98295 1.21512 1.47365 0.98739 0.92450 0.92538 1.25587 0.94175 0.95862 1.01435 1.69960 1.44841 1.07278 1.32794 0.85458 0.78104 0.78271 0.79335 1.20404 1.19927 1.19419 0.87166 0.87032 0.89789 0.80577 0.78114 0.88953 0.88433 0.91214 0.87311 0.85966 0.90880 0.88017 0.87317 0.94103 0.90987 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.66 9.92 71.24 0.71 -1.95 16 2 C 0.20 7.45 6.92 41.10 0.28 7.73 16 3 C -0.35 -14.51 9.41 22.24 0.21 -14.30 16 4 C 0.45 20.38 8.07 133.92 1.08 21.46 16 5 N -0.70 -33.56 10.51 -311.31 -3.27 -36.83 16 6 C 0.56 26.50 7.73 86.88 0.67 27.18 16 7 O -0.61 -29.04 13.81 -5.01 -0.07 -29.11 16 8 C -0.06 -2.49 6.98 40.70 0.28 -2.20 16 9 C 0.02 0.70 11.37 83.71 0.95 1.65 16 10 N -0.45 -10.60 3.13 -512.38 -1.60 -12.21 16 11 C 0.19 5.43 7.65 138.05 1.06 6.48 16 12 N -0.49 -19.09 11.26 -176.28 -1.99 -21.07 16 13 C -0.03 -0.56 6.33 30.11 0.19 -0.37 16 14 C -0.12 -1.02 5.95 30.77 0.18 -0.84 16 15 C -0.13 -0.85 5.93 30.72 0.18 -0.66 16 16 C 0.09 1.00 6.97 86.45 0.60 1.60 16 17 N -0.47 -19.15 7.38 -54.78 -0.40 -19.56 16 18 H 0.45 16.78 8.96 -213.29 -1.91 14.87 16 19 N -0.35 -14.02 3.63 -337.52 -1.23 -15.24 16 20 C 0.27 11.65 5.71 85.63 0.49 12.14 16 21 C -0.56 -27.33 9.39 25.60 0.24 -27.09 16 22 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 23 C 0.03 1.57 5.46 84.66 0.46 2.03 16 24 N -0.91 -46.49 13.29 21.45 0.28 -46.21 16 25 Si 0.96 39.74 29.54 68.60 2.03 41.77 16 26 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.08 2.51 7.81 -2.39 -0.02 2.49 16 32 H 0.18 7.58 5.77 -2.91 -0.02 7.56 16 33 H 0.20 5.14 8.06 -2.91 -0.02 5.12 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 0.65 8.12 -2.38 -0.02 0.63 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.12 0.06 8.14 -2.38 -0.02 0.04 16 39 H 0.07 0.58 8.11 -2.38 -0.02 0.56 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 3.10 7.89 -2.39 -0.02 3.08 16 44 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 Total: -1.00 -75.77 371.79 0.47 -75.30 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.88 Total: 30.30 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 7.60 Total: 32.85 kcal Atomic # 7 Polarization: -142.91 SS G_CDS: -8.21 Total: -151.12 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.07 Total: -29.11 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -75.77 0.47 -75.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548910562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.051 kcal (2) G-P(sol) polarization free energy of solvation -75.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds