Wall clock time and date at job start Sat Apr 11 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30382 * 125.91767 * 2 1 4 4 N 1.39907 * 109.13548 * 180.24918 * 3 2 1 5 5 C 1.46498 * 125.75965 * 179.71120 * 4 3 2 6 6 C 1.34746 * 108.47703 * 359.74933 * 4 3 2 7 7 N 1.39051 * 126.40741 * 180.02562 * 6 4 3 8 8 C 1.35949 * 126.10476 * 334.98849 * 7 6 4 9 9 C 1.35262 * 107.59836 * 179.97438 * 8 7 6 10 10 C 1.39992 * 107.97400 * 0.02562 * 9 8 7 11 11 N 1.30816 * 108.38317 * 359.73898 * 10 9 8 12 12 C 1.38991 * 107.18395 * 0.02562 * 6 4 3 13 13 C 1.47053 * 126.48476 * 179.97438 * 12 6 4 14 14 O 1.21650 * 119.99991 * 89.99511 * 13 12 6 15 15 N 1.34773 * 119.99795 * 270.00297 * 13 12 6 16 16 C 1.46499 * 120.00109 * 185.01499 * 15 13 12 17 17 C 1.52995 * 109.47555 * 175.18491 * 16 15 13 18 18 C 1.50699 * 115.54929 * 65.21265 * 17 16 15 19 19 H 1.07995 * 120.00387 * 264.81709 * 18 17 16 20 20 C 1.37883 * 119.99828 * 84.81517 * 18 17 16 21 21 N 1.31515 * 119.99999 * 184.67397 * 20 18 17 22 22 Si 1.86797 * 119.99937 * 4.68016 * 20 18 17 23 23 H 1.48499 * 109.47640 * 94.52501 * 22 20 18 24 24 H 1.48503 * 109.47110 * 214.52677 * 22 20 18 25 25 H 1.48507 * 109.46969 * 334.52079 * 22 20 18 26 26 C 1.53004 * 117.49998 * 279.55048 * 17 16 15 27 27 C 1.53004 * 117.50151 * 210.88562 * 17 16 15 28 28 H 1.09002 * 109.46927 * 270.16917 * 1 2 3 29 29 H 1.08997 * 109.47104 * 30.16445 * 1 2 3 30 30 H 1.08998 * 109.47452 * 150.17145 * 1 2 3 31 31 H 1.08996 * 109.47256 * 270.04322 * 5 4 3 32 32 H 1.09000 * 109.47192 * 30.04451 * 5 4 3 33 33 H 1.08999 * 109.47225 * 150.04090 * 5 4 3 34 34 H 1.08000 * 126.20543 * 359.97438 * 8 7 6 35 35 H 1.08000 * 126.01003 * 180.02562 * 9 8 7 36 36 H 1.08001 * 125.80761 * 180.02562 * 10 9 8 37 37 H 0.97003 * 120.00240 * 5.01308 * 15 13 12 38 38 H 1.09000 * 109.47613 * 295.19166 * 16 15 13 39 39 H 1.09004 * 109.47272 * 55.18591 * 16 15 13 40 40 H 0.97001 * 119.99534 * 180.02562 * 21 20 18 41 41 H 1.08997 * 117.49827 * 359.97438 * 26 17 16 42 42 H 1.08996 * 117.50121 * 145.01984 * 26 17 16 43 43 H 1.08997 * 117.49982 * 214.97529 * 27 17 16 44 44 H 1.08994 * 117.49594 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2718 1.0559 0.0000 4 7 3.6113 0.6520 -0.0057 5 6 4.7741 1.5429 -0.0136 6 6 3.6511 -0.6949 -0.0037 7 7 4.7942 -1.4867 -0.0074 8 6 6.0175 -1.1255 -0.4777 9 6 6.8512 -2.1752 -0.2976 10 6 6.1207 -3.2097 0.2989 11 7 4.8921 -2.7974 0.4776 12 6 2.3360 -1.1447 0.0027 13 6 1.8913 -2.5463 0.0064 14 8 1.7121 -3.1248 1.0614 15 7 1.6823 -3.1900 -1.1591 16 6 1.1347 -4.5488 -1.1575 17 6 0.8847 -4.9997 -2.5980 18 6 2.1153 -5.1508 -3.4547 19 1 2.4325 -4.3388 -4.0922 20 6 2.8363 -6.3257 -3.4245 21 7 3.9599 -6.4252 -4.1005 22 14 2.2169 -7.7761 -2.4234 23 1 1.4321 -8.6830 -3.2990 24 1 3.3729 -8.5148 -1.8549 25 1 1.3535 -7.2834 -1.3201 26 6 -0.3947 -4.5100 -3.2796 27 6 -0.2707 -5.9722 -2.8435 28 1 -0.3633 0.0030 1.0277 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8915 -0.5111 31 1 5.0570 1.7622 -1.0431 32 1 4.5241 2.4712 0.5001 33 1 5.6066 1.0583 0.4966 34 1 6.2767 -0.1729 -0.9158 35 1 7.8966 -2.2092 -0.5666 36 1 6.5069 -4.1812 0.5701 37 1 1.8944 -2.7536 -1.9991 38 1 1.8447 -5.2261 -0.6829 39 1 0.1954 -4.5614 -0.6047 40 1 4.4669 -7.2519 -4.0795 41 1 -1.0584 -3.8670 -2.7016 42 1 -0.3464 -4.2976 -4.3476 43 1 -0.1409 -6.7210 -3.6248 44 1 -0.8524 -6.2911 -1.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562393176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:41 Heat of formation + Delta-G solvation = 136.541940 kcal Electronic energy + Delta-G solvation = -28697.533239 eV Core-core repulsion = 24847.060689 eV Total energy + Delta-G solvation = -3850.472550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.13835 -41.85136 -40.31565 -38.63545 -35.65745 -34.92638 -34.22183 -33.97864 -31.64950 -30.55601 -30.32828 -28.47578 -27.47124 -26.48287 -24.30293 -23.39489 -22.98650 -22.23208 -21.19932 -21.01007 -20.49478 -19.12887 -18.43297 -17.90613 -17.45761 -16.96925 -16.69602 -16.51511 -16.04235 -15.71536 -15.59069 -15.42535 -14.79367 -14.74396 -14.50899 -14.48577 -14.41624 -14.14418 -13.89743 -13.61522 -13.52969 -13.23004 -13.13507 -13.08320 -12.72862 -12.20926 -12.16660 -11.98800 -11.85646 -11.55070 -11.49828 -11.10199 -11.01305 -10.63504 -10.41060 -10.31578 -9.98368 -9.88641 -9.38963 -8.29888 -6.35323 -0.17299 0.49487 1.00083 1.30511 1.32783 1.38992 1.50641 1.58218 1.65373 1.73543 2.36903 2.40902 3.05368 3.17412 3.28537 3.32991 3.68411 3.93568 3.98230 4.06879 4.13149 4.17225 4.23940 4.36350 4.43389 4.46513 4.50703 4.53984 4.59069 4.71218 4.76073 4.83644 4.87602 4.90592 4.91350 5.09758 5.12831 5.30454 5.38495 5.49156 5.51726 5.58377 5.70347 6.02243 6.23136 6.27731 6.50565 6.66155 6.73727 7.31304 7.35167 8.84789 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.004888 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.818317 B = 5727.409843 C = 7189.723635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.124 3.876 3 N -0.279 5.279 4 N -0.359 5.359 5 C 0.074 3.926 6 C 0.352 3.648 7 N -0.333 5.333 8 C 0.038 3.962 9 C -0.237 4.237 10 C 0.050 3.950 11 N -0.308 5.308 12 C -0.297 4.297 13 C 0.606 3.394 14 O -0.580 6.580 15 N -0.691 5.691 16 C 0.171 3.829 17 C -0.042 4.042 18 C -0.478 4.478 19 H 0.039 0.961 20 C 0.030 3.970 21 N -0.941 5.941 22 Si 0.927 3.073 23 H -0.268 1.268 24 H -0.302 1.302 25 H -0.240 1.240 26 C -0.151 4.151 27 C -0.187 4.187 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.196 0.804 36 H 0.210 0.790 37 H 0.403 0.597 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.129 16.806 6.989 18.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 N -0.102 5.102 4 N -0.143 5.143 5 C -0.064 4.064 6 C 0.129 3.871 7 N -0.113 5.113 8 C -0.100 4.100 9 C -0.265 4.265 10 C -0.139 4.139 11 N -0.126 5.126 12 C -0.315 4.315 13 C 0.392 3.608 14 O -0.460 6.460 15 N -0.338 5.338 16 C 0.047 3.953 17 C -0.043 4.043 18 C -0.515 4.515 19 H 0.057 0.943 20 C -0.168 4.168 21 N -0.580 5.580 22 Si 0.752 3.248 23 H -0.193 1.193 24 H -0.230 1.230 25 H -0.163 1.163 26 C -0.188 4.188 27 C -0.225 4.225 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.120 0.880 34 H 0.237 0.763 35 H 0.213 0.787 36 H 0.227 0.773 37 H 0.237 0.763 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.098 0.902 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.074 17.431 8.100 19.252 hybrid contribution 1.390 -1.769 -0.486 2.301 sum 2.464 15.663 7.614 17.589 Atomic orbital electron populations 1.20417 0.83448 1.04942 1.04627 1.22600 0.98401 0.87292 0.95954 1.77136 0.84693 1.20895 1.27509 1.48634 1.07585 1.01032 1.57032 1.22683 0.82910 0.94596 1.06248 1.17352 0.85546 0.83342 1.00886 1.45135 1.06413 1.11043 1.48745 1.23710 0.82989 1.03215 1.00083 1.22105 1.03225 0.92188 1.08933 1.24842 0.90231 1.01767 0.97027 1.77912 1.21977 0.91040 1.21683 1.19711 0.91378 0.94878 1.25492 1.17158 0.75809 0.84654 0.83190 1.90698 1.53892 1.68814 1.32626 1.45770 1.63813 1.16103 1.08153 1.20849 0.96293 0.82020 0.96141 1.19438 0.89505 1.03010 0.92331 1.20283 1.08024 1.00023 1.23197 0.94308 1.25658 0.94263 1.01212 0.95675 1.70024 1.15879 1.27842 1.44279 0.86061 0.78064 0.79845 0.80791 1.19297 1.22977 1.16261 1.22883 0.99546 0.95754 1.00590 1.23018 1.02846 0.93639 1.03008 0.88838 0.87639 0.90299 0.87177 0.86253 0.87987 0.76258 0.78727 0.77340 0.76293 0.95438 0.92123 0.92724 0.87766 0.89598 0.90202 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.27 71.23 0.73 -0.95 16 2 C 0.12 3.66 7.26 43.53 0.32 3.97 16 3 N -0.28 -7.59 12.48 -46.68 -0.58 -8.17 16 4 N -0.36 -8.89 3.99 -364.76 -1.46 -10.34 16 5 C 0.07 0.90 9.95 127.77 1.27 2.17 16 6 C 0.35 11.38 7.65 132.30 1.01 12.39 16 7 N -0.33 -10.65 3.78 -191.03 -0.72 -11.37 16 8 C 0.04 0.85 9.82 83.37 0.82 1.67 16 9 C -0.24 -5.24 10.80 22.01 0.24 -5.00 16 10 C 0.05 1.50 12.02 85.27 1.02 2.53 16 11 N -0.31 -11.78 11.64 -56.95 -0.66 -12.45 16 12 C -0.30 -10.72 5.90 -20.02 -0.12 -10.84 16 13 C 0.61 25.63 6.47 86.56 0.56 26.19 16 14 O -0.58 -28.56 17.12 -4.19 -0.07 -28.64 16 15 N -0.69 -29.00 5.47 -466.73 -2.55 -31.55 16 16 C 0.17 7.58 5.12 86.38 0.44 8.03 16 17 C -0.04 -1.85 0.81 -52.93 -0.04 -1.90 16 18 C -0.48 -26.12 9.19 25.60 0.24 -25.89 16 19 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 20 C 0.03 1.73 5.47 84.66 0.46 2.19 16 21 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 22 Si 0.93 45.10 24.94 68.60 1.71 46.81 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 25 H -0.24 -11.01 5.69 99.48 0.57 -10.44 16 26 C -0.15 -5.51 9.96 30.62 0.30 -5.20 16 27 C -0.19 -7.35 7.31 30.62 0.22 -7.13 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.82 8.00 -2.39 -0.02 1.80 16 31 H 0.11 0.80 8.09 -2.39 -0.02 0.78 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 0.98 6.41 -2.39 -0.02 0.96 16 34 H 0.22 2.57 6.42 -2.91 -0.02 2.55 16 35 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.21 5.13 8.06 -2.91 -0.02 5.11 16 37 H 0.40 16.69 8.32 -92.71 -0.77 15.92 16 38 H 0.03 1.39 7.06 -2.39 -0.02 1.37 16 39 H 0.06 2.49 8.09 -2.38 -0.02 2.47 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.08 3.28 7.13 -2.39 -0.02 3.27 16 44 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -82.70 372.14 3.56 -79.13 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.13 Total: 31.75 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 7.48 Total: 2.24 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.68 Total: -131.31 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.07 Total: -28.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.71 Total: 46.81 kcal Total: -82.70 3.56 -79.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562393176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.676 kcal (2) G-P(sol) polarization free energy of solvation -82.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds