Wall clock time and date at job start Sat Apr 11 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28812 * 125.93976 * 2 1 4 4 N 1.28647 * 111.79529 * 180.02562 * 3 2 1 5 5 C 1.34753 * 109.28531 * 0.02562 * 4 3 2 6 6 C 1.39913 * 134.58519 * 179.97438 * 5 4 3 7 7 C 1.36153 * 119.97618 * 179.77779 * 6 5 4 8 8 C 1.40260 * 120.55580 * 0.47939 * 7 6 5 9 9 C 1.47723 * 119.88027 * 179.77438 * 8 7 6 10 10 O 1.21562 * 119.99858 * 187.15862 * 9 8 7 11 11 N 1.34772 * 120.00012 * 7.15469 * 9 8 7 12 12 C 1.47028 * 125.65018 * 354.25631 * 11 9 8 13 13 C 1.54364 * 107.28939 * 181.12695 * 12 11 9 14 14 C 1.55159 * 102.92146 * 22.13663 * 13 12 11 15 15 H 1.08995 * 111.00105 * 82.64254 * 14 13 12 16 16 C 1.52998 * 111.00086 * 206.45378 * 14 13 12 17 17 N 1.46510 * 109.46816 * 181.82231 * 16 14 13 18 18 C 1.36935 * 120.00024 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99869 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00089 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99561 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99960 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46965 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47033 * 299.99328 * 22 20 18 25 25 H 1.48497 * 109.47633 * 59.99911 * 22 20 18 26 26 C 1.47425 * 125.65003 * 174.29594 * 11 9 8 27 27 C 1.39163 * 120.23749 * 359.49922 * 8 7 6 28 28 C 1.37364 * 125.94700 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47669 * 269.97458 * 1 2 3 30 30 H 1.08993 * 109.47141 * 29.98223 * 1 2 3 31 31 H 1.09006 * 109.46475 * 149.97593 * 1 2 3 32 32 H 1.08005 * 120.00722 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.72526 * 180.25753 * 7 6 5 34 34 H 1.09002 * 109.87767 * 300.51378 * 12 11 9 35 35 H 1.09004 * 109.88164 * 61.51998 * 12 11 9 36 36 H 1.09008 * 110.70600 * 263.79228 * 13 12 11 37 37 H 1.09002 * 110.75819 * 140.50528 * 13 12 11 38 38 H 1.09004 * 109.47641 * 61.82332 * 16 14 13 39 39 H 1.09002 * 109.47714 * 301.81901 * 16 14 13 40 40 H 0.96999 * 119.99970 * 359.97438 * 17 16 14 41 41 H 0.96997 * 120.00344 * 0.02562 * 21 20 18 42 42 H 1.08998 * 110.36499 * 36.99666 * 26 11 9 43 43 H 1.09004 * 110.45817 * 274.72262 * 26 11 9 44 44 H 1.08004 * 120.24127 * 180.22677 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2210 1.0429 0.0000 4 7 3.4685 0.7285 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6697 -1.5025 -0.0028 7 6 4.4458 -2.8455 0.0010 8 6 3.1371 -3.3501 -0.0038 9 6 2.9113 -4.8100 -0.0045 10 8 1.7866 -5.2510 -0.1399 11 7 3.9523 -5.6529 0.1447 12 6 5.3692 -5.2639 0.1977 13 6 6.1952 -6.5593 0.3481 14 6 5.2338 -7.6490 -0.1956 15 1 5.2770 -7.7005 -1.2835 16 6 5.5413 -9.0120 0.4277 17 7 4.6447 -10.0220 -0.1401 18 6 4.7347 -11.3255 0.2698 19 1 5.4668 -11.6090 1.0114 20 6 3.8856 -12.2826 -0.2686 21 7 2.9936 -11.9371 -1.1727 22 14 4.0088 -14.0608 0.2901 23 1 2.9988 -14.8771 -0.4302 24 1 5.3682 -14.5797 -0.0066 25 1 3.7570 -14.1392 1.7515 26 6 3.8589 -7.1179 0.2810 27 6 2.0506 -2.4805 -0.0020 28 6 2.2714 -1.1120 -0.0005 29 1 -0.3634 -0.0005 1.0276 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3632 -0.8899 -0.5143 32 1 5.6811 -1.1234 -0.0037 33 1 5.2828 -3.5279 0.0042 34 1 5.6477 -4.7522 -0.7235 35 1 5.5422 -4.6094 1.0520 36 1 6.4349 -6.7441 1.3953 37 1 7.1028 -6.5107 -0.2535 38 1 5.3933 -8.9600 1.5064 39 1 6.5754 -9.2837 0.2156 40 1 3.9869 -9.7673 -0.8059 41 1 2.9299 -11.0138 -1.4631 42 1 3.0616 -7.5077 -0.3518 43 1 3.6856 -7.3935 1.3213 44 1 1.0429 -2.8691 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690754124.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:18 Heat of formation + Delta-G solvation = 125.834217 kcal Electronic energy + Delta-G solvation = -27093.528825 eV Core-core repulsion = 23242.591953 eV Total energy + Delta-G solvation = -3850.936872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57247 -40.61206 -38.22037 -37.46406 -35.28151 -35.04283 -32.73659 -31.29390 -31.06349 -30.42285 -28.76000 -28.35615 -25.99088 -24.40033 -24.19448 -23.11839 -22.25021 -21.53232 -20.35426 -20.00730 -18.93584 -17.86941 -17.24759 -17.13712 -16.62316 -16.23569 -15.79091 -15.02410 -14.95431 -14.72522 -14.52095 -14.04887 -13.98136 -13.90509 -13.64485 -13.49538 -13.26232 -13.02020 -12.84527 -12.61201 -12.35534 -12.29380 -12.07463 -11.62298 -11.20751 -11.12131 -11.01079 -10.80945 -10.66731 -10.59441 -10.45839 -10.11545 -9.97755 -9.38495 -9.17961 -8.90999 -8.88828 -8.63692 -7.03060 -6.10922 -3.11581 -0.05467 0.77133 1.70771 1.74047 2.63633 2.75752 3.38211 3.51374 3.53916 3.55101 3.72722 3.98513 4.08678 4.21335 4.42369 4.47737 4.52408 4.59093 4.65170 4.69874 4.77147 4.78495 4.89520 5.02037 5.08882 5.22205 5.38655 5.45127 5.57404 5.60735 5.72523 5.74731 5.80151 5.83131 5.83651 5.87914 6.02222 6.07243 6.15730 6.19396 6.28962 6.56815 6.68727 7.34831 7.78852 7.89491 7.96821 8.74971 9.21104 10.07516 10.21547 11.37473 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027693 B = 0.002186 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.854112 B =12803.515149 C =13671.655432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.315 5.315 3 N -0.016 5.016 4 N -0.259 5.259 5 C 0.026 3.974 6 C -0.055 4.055 7 C -0.131 4.131 8 C -0.095 4.095 9 C 0.572 3.428 10 O -0.532 6.532 11 N -0.609 5.609 12 C 0.087 3.913 13 C -0.128 4.128 14 C -0.108 4.108 15 H 0.085 0.915 16 C 0.170 3.830 17 N -0.744 5.744 18 C -0.334 4.334 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.942 5.942 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C 0.115 3.885 27 C -0.034 4.034 28 C 0.012 3.988 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.367 0.633 41 H 0.255 0.745 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 25.209 3.155 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.116 5.116 3 N 0.003 4.997 4 N -0.133 5.133 5 C -0.099 4.099 6 C -0.078 4.078 7 C -0.151 4.151 8 C -0.102 4.102 9 C 0.361 3.639 10 O -0.409 6.409 11 N -0.342 5.342 12 C -0.035 4.035 13 C -0.166 4.166 14 C -0.127 4.127 15 H 0.103 0.897 16 C 0.042 3.958 17 N -0.390 5.390 18 C -0.465 4.465 19 H 0.083 0.917 20 C -0.243 4.243 21 N -0.588 5.588 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.006 4.006 27 C -0.057 4.057 28 C -0.106 4.106 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.192 0.808 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.200 0.800 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.492 24.969 3.051 25.160 hybrid contribution 0.192 0.675 0.051 0.703 sum 0.683 25.644 3.102 25.840 Atomic orbital electron populations 1.22313 0.71777 1.06241 1.05253 1.47141 1.08948 1.02945 1.52527 1.77993 0.96960 1.12328 1.12407 1.75376 1.07547 1.11311 1.19039 1.20167 0.93347 0.91219 1.05208 1.20007 0.97528 0.91053 0.99176 1.22459 0.97984 0.96196 0.98488 1.19702 0.93457 0.92965 1.04077 1.17685 0.83857 0.85143 0.77241 1.90820 1.22358 1.78073 1.49651 1.48369 1.05936 1.08443 1.71478 1.22609 0.81237 0.98258 1.01445 1.22742 0.98119 0.92868 1.02865 1.22619 0.93282 0.95588 1.01223 0.89650 1.20526 0.94128 0.85578 0.95522 1.42378 1.41413 1.05298 1.49944 1.20003 1.18645 0.85684 1.22168 0.91729 1.25795 0.95626 1.04585 0.98264 1.70881 1.36283 1.19448 1.32147 0.83237 0.75564 0.74906 0.75173 1.21030 1.22256 1.22255 1.22389 0.98945 0.77084 1.02176 1.20057 1.00417 0.87655 0.97574 1.19589 0.91075 0.90767 1.09180 0.88912 0.87668 0.88088 0.83759 0.80751 0.90158 0.90115 0.89946 0.89557 0.95880 0.95626 0.79950 0.93352 0.89787 0.90677 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.40 59.85 0.68 1.04 16 2 N -0.32 -2.93 3.80 -65.54 -0.25 -3.18 16 3 N -0.02 -0.18 13.07 60.35 0.79 0.61 16 4 N -0.26 -3.24 12.42 32.09 0.40 -2.84 16 5 C 0.03 0.30 7.36 -84.95 -0.62 -0.33 16 6 C -0.06 -0.49 10.03 -39.70 -0.40 -0.89 16 7 C -0.13 -1.13 8.52 -39.57 -0.34 -1.47 16 8 C -0.09 -1.06 5.87 -104.92 -0.62 -1.68 16 9 C 0.57 8.05 7.80 -12.39 -0.10 7.95 16 10 O -0.53 -9.48 16.57 5.31 0.09 -9.39 16 11 N -0.61 -7.81 3.33 -178.07 -0.59 -8.40 16 12 C 0.09 0.75 4.87 -3.04 -0.01 0.74 16 13 C -0.13 -1.23 6.42 -24.87 -0.16 -1.39 16 14 C -0.11 -1.54 3.07 -88.47 -0.27 -1.81 16 15 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 16 C 0.17 3.18 5.71 -4.04 -0.02 3.16 16 17 N -0.74 -18.28 5.49 -59.90 -0.33 -18.61 16 18 C -0.33 -9.34 9.99 -15.06 -0.15 -9.49 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.04 -1.31 5.50 -17.43 -0.10 -1.40 16 21 N -0.94 -29.26 13.70 55.49 0.76 -28.50 16 22 Si 1.08 25.84 29.92 -169.99 -5.09 20.76 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.12 1.77 6.26 -2.53 -0.02 1.76 16 27 C -0.03 -0.36 9.59 -39.10 -0.38 -0.74 16 28 C 0.01 0.13 6.93 -84.24 -0.58 -0.45 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.18 1.12 2.67 -60.76 -0.16 0.96 16 34 H 0.08 0.55 6.73 -51.93 -0.35 0.21 16 35 H 0.08 0.54 6.72 -51.93 -0.35 0.19 16 36 H 0.08 0.76 8.04 -51.92 -0.42 0.34 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.44 8.03 -51.93 -0.42 0.02 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.37 9.30 6.46 -40.82 -0.26 9.04 16 41 H 0.26 7.81 6.77 -40.82 -0.28 7.53 16 42 H 0.08 1.52 7.98 -51.93 -0.41 1.10 16 43 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 44 H 0.15 1.43 7.65 -52.48 -0.40 1.02 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -37.04 362.72 -7.47 -44.51 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.63 Total: 4.58 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -3.08 Total: -4.99 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.78 Total: -60.93 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.09 Total: 20.76 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.04 -7.47 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690754124.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.344 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds