Wall clock time and date at job start Sat Apr 11 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31177 * 118.51213 * 2 1 4 4 C 1.34146 * 120.46678 * 179.97438 * 3 2 1 5 5 C 1.40155 * 121.95734 * 179.97438 * 4 3 2 6 6 C 1.36291 * 119.61567 * 180.02562 * 5 4 3 7 7 C 1.39418 * 121.00177 * 0.02562 * 6 5 4 8 8 F 1.35094 * 119.57422 * 179.97438 * 7 6 5 9 9 C 1.36576 * 120.84700 * 359.95454 * 7 6 5 10 10 C 1.39928 * 119.48977 * 359.78889 * 9 7 6 11 11 C 1.41616 * 122.10777 * 179.69695 * 10 9 7 12 12 N 1.37879 * 120.91004 * 0.57770 * 11 10 9 13 13 C 1.46896 * 111.00207 * 250.80388 * 12 11 10 14 14 C 1.50700 * 109.47121 * 292.87889 * 13 12 11 15 15 H 1.08003 * 120.00212 * 355.15475 * 14 13 12 16 16 C 1.37878 * 120.00233 * 175.15786 * 14 13 12 17 17 N 1.31516 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00262 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46951 * 89.99944 * 18 16 14 20 20 H 1.48499 * 109.47529 * 210.00170 * 18 16 14 21 21 H 1.48502 * 109.46826 * 330.00232 * 18 16 14 22 22 C 1.46907 * 111.00019 * 126.84838 * 12 11 10 23 23 C 1.54892 * 110.48376 * 182.17097 * 22 12 11 24 24 C 1.54886 * 102.74625 * 156.62084 * 23 22 12 25 25 C 1.54270 * 104.19853 * 322.05795 * 24 23 22 26 26 C 1.53876 * 106.59604 * 23.60899 * 25 24 23 27 27 N 1.32342 * 118.51206 * 179.97438 * 2 1 3 28 28 H 1.08993 * 109.47134 * 270.02386 * 1 2 3 29 29 H 1.09006 * 109.47223 * 30.01850 * 1 2 3 30 30 H 1.09002 * 109.47227 * 150.01923 * 1 2 3 31 31 H 1.07998 * 120.19481 * 0.04625 * 5 4 3 32 32 H 1.07996 * 119.49573 * 179.97438 * 6 5 4 33 33 H 1.08004 * 120.25609 * 180.02562 * 9 7 6 34 34 H 1.08999 * 109.47015 * 52.87860 * 13 12 11 35 35 H 1.08997 * 109.47656 * 172.87601 * 13 12 11 36 36 H 0.96998 * 120.00121 * 179.97438 * 17 16 14 37 37 H 1.08991 * 110.53694 * 59.56279 * 22 12 11 38 38 H 1.08996 * 110.75988 * 274.93652 * 23 22 12 39 39 H 1.08999 * 110.75610 * 38.31397 * 23 22 12 40 40 H 1.09001 * 110.48904 * 80.73646 * 24 23 22 41 41 H 1.09002 * 110.49227 * 203.37908 * 24 23 22 42 42 H 1.08996 * 110.03602 * 264.32662 * 25 24 23 43 43 H 1.08998 * 110.07151 * 142.91144 * 25 24 23 44 44 H 1.08994 * 110.03126 * 240.71456 * 26 25 24 45 45 H 1.09000 * 110.03502 * 119.28254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1332 1.1527 0.0000 4 6 3.4739 1.1984 0.0005 5 6 4.1747 2.4122 0.0000 6 6 5.5376 2.4030 0.0000 7 6 6.2476 1.2031 0.0000 8 9 7.5983 1.2277 -0.0005 9 6 5.5951 0.0033 0.0009 10 6 4.1960 -0.0199 0.0064 11 6 3.4633 -1.2318 0.0012 12 7 4.1092 -2.4500 0.0025 13 6 3.9634 -3.1245 -1.2943 14 6 2.5211 -3.5094 -1.5010 15 1 1.8006 -3.3473 -0.7129 16 6 2.1213 -4.0687 -2.6962 17 7 2.9986 -4.2657 -3.6560 18 14 0.3337 -4.5465 -2.9521 19 1 -0.4086 -3.3962 -3.5276 20 1 0.2582 -5.7004 -3.8838 21 1 -0.2696 -4.9227 -1.6484 22 6 3.6240 -3.3020 1.0965 23 6 4.3950 -4.6451 1.1202 24 6 4.2260 -5.1103 2.5879 25 6 4.3240 -3.8091 3.4109 26 6 3.9413 -2.6594 2.4626 27 7 2.1387 -1.1629 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3634 0.8899 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 3.6379 3.3493 -0.0001 32 1 6.0756 3.3393 -0.0008 33 1 6.1547 -0.9205 0.0014 34 1 4.2775 -2.4508 -2.0916 35 1 4.5843 -4.0201 -1.3099 36 1 2.7174 -4.6595 -4.4967 37 1 2.5531 -3.4786 0.9975 38 1 3.9442 -5.3616 0.4336 39 1 5.4476 -4.4906 0.8829 40 1 3.2522 -5.5790 2.7299 41 1 5.0252 -5.7978 2.8647 42 1 5.3432 -3.6716 3.7721 43 1 3.6318 -3.8455 4.2520 44 1 4.7747 -1.9640 2.3636 45 1 3.0628 -2.1383 2.8430 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:05 Heat of formation + Delta-G solvation = 24.954598 kcal Electronic energy + Delta-G solvation = -29153.365737 eV Core-core repulsion = 25278.134435 eV Total energy + Delta-G solvation = -3875.231302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -48.77241 -41.14370 -38.60662 -37.28602 -35.61035 -33.02630 -32.06036 -31.54031 -30.51347 -28.52009 -27.67366 -27.43235 -26.28784 -24.06404 -22.91678 -22.49170 -21.22280 -19.92528 -19.49572 -18.31061 -18.03809 -16.85068 -16.25467 -16.00335 -15.65610 -15.51293 -15.10108 -14.85074 -14.50214 -14.17618 -13.97922 -13.60411 -13.58221 -13.37627 -12.94268 -12.82886 -12.68883 -12.41267 -12.08654 -11.86363 -11.42930 -11.30374 -11.17306 -11.11530 -10.92234 -10.82152 -10.74116 -10.48103 -10.40781 -10.37700 -10.19397 -10.16000 -9.91512 -9.67168 -9.01910 -8.64605 -8.44794 -7.99743 -7.77478 -6.07871 -4.11721 0.44264 0.89900 2.07642 3.03622 3.27091 3.34150 3.37492 4.09150 4.23473 4.29338 4.31348 4.40200 4.56471 4.78055 4.92307 4.98462 5.06915 5.08590 5.25428 5.27570 5.47869 5.52953 5.77892 5.79023 5.85249 5.88219 5.91394 5.96813 5.98288 6.04504 6.06212 6.13253 6.15121 6.18348 6.21400 6.29125 6.37070 6.56767 6.64442 6.76446 6.83708 6.86017 7.05619 7.34354 7.47721 7.60438 7.91923 8.01229 8.16655 8.60957 8.98913 9.53931 11.00144 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009373 B = 0.005550 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2986.671525 B = 5043.691032 C = 6036.510180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.338 3.662 3 N -0.532 5.532 4 C 0.159 3.841 5 C -0.085 4.085 6 C -0.113 4.113 7 C 0.067 3.933 8 F -0.141 7.141 9 C -0.074 4.074 10 C -0.138 4.138 11 C 0.438 3.562 12 N -0.496 5.496 13 C 0.193 3.807 14 C -0.538 4.538 15 H 0.082 0.918 16 C 0.063 3.937 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.272 1.272 22 C 0.096 3.904 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.125 4.125 27 N -0.520 5.520 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.154 0.846 34 H 0.032 0.968 35 H 0.049 0.951 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 7.798 10.840 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 N -0.248 5.248 4 C 0.031 3.969 5 C -0.103 4.103 6 C -0.135 4.135 7 C 0.048 3.952 8 F -0.120 7.120 9 C -0.096 4.096 10 C -0.144 4.144 11 C 0.188 3.812 12 N -0.220 5.220 13 C 0.070 3.930 14 C -0.577 4.577 15 H 0.100 0.900 16 C -0.139 4.139 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.012 4.012 23 C -0.146 4.146 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.163 4.163 27 N -0.237 5.237 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.172 0.828 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.297 7.928 10.718 13.528 hybrid contribution -0.604 -0.387 -0.651 0.969 sum 1.694 7.541 10.067 12.692 Atomic orbital electron populations 1.20564 0.86486 1.04044 1.03225 1.23095 0.97901 0.83370 0.88814 1.68587 1.07822 1.29704 1.18732 1.18884 0.89819 0.92535 0.95702 1.20470 0.92618 0.96911 1.00343 1.20905 0.94493 0.97389 1.00684 1.17345 0.77065 0.94328 1.06455 1.91490 1.28836 1.97401 1.94263 1.20946 0.93485 0.97917 0.97204 1.19037 0.94619 0.94398 1.06376 1.20395 0.86346 0.91619 0.82871 1.60574 1.51312 1.01611 1.08458 1.19937 0.97494 0.94055 0.81477 1.21901 0.94549 1.40368 1.00843 0.90035 1.24936 0.97324 0.95747 0.95875 1.69945 1.33885 1.44354 1.05315 0.86604 0.85478 0.77958 0.78067 1.20836 1.21419 1.19693 1.22403 0.99453 0.91683 0.87632 1.22443 1.00597 0.96043 0.95494 1.22321 1.01263 0.96723 0.95823 1.22031 1.00737 0.95010 0.97690 1.22281 1.00695 0.97969 0.95360 1.68786 1.10843 1.28823 1.15204 0.90096 0.90119 0.89469 0.83832 0.84253 0.82830 0.95008 0.93262 0.92903 0.90551 0.90447 0.91162 0.91871 0.92001 0.92176 0.92528 0.91637 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.28 36.01 0.37 -0.88 16 2 C 0.34 6.29 7.62 -157.25 -1.20 5.09 16 3 N -0.53 -9.60 10.32 -8.81 -0.09 -9.69 16 4 C 0.16 2.75 6.61 -84.84 -0.56 2.19 16 5 C -0.08 -1.15 10.01 -39.56 -0.40 -1.55 16 6 C -0.11 -1.40 9.92 -39.84 -0.40 -1.80 16 7 C 0.07 0.97 7.24 -39.74 -0.29 0.68 16 8 F -0.14 -2.00 17.25 2.25 0.04 -1.96 16 9 C -0.07 -1.21 9.55 -39.55 -0.38 -1.58 16 10 C -0.14 -2.52 5.75 -106.68 -0.61 -3.13 16 11 C 0.44 8.83 4.53 -154.95 -0.70 8.13 16 12 N -0.50 -9.95 3.82 -164.59 -0.63 -10.58 16 13 C 0.19 4.64 4.76 -4.98 -0.02 4.62 16 14 C -0.54 -13.94 7.45 -34.44 -0.26 -14.20 16 15 H 0.08 2.13 5.13 -52.48 -0.27 1.86 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 18 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.10 1.74 1.90 -66.05 -0.13 1.62 16 23 C -0.11 -1.79 5.15 -24.74 -0.13 -1.92 16 24 C -0.12 -1.67 6.83 -25.07 -0.17 -1.84 16 25 C -0.12 -1.52 6.80 -25.61 -0.17 -1.69 16 26 C -0.12 -1.94 5.76 -25.61 -0.15 -2.09 16 27 N -0.52 -10.74 7.50 -9.70 -0.07 -10.82 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.15 2.47 7.66 -52.48 -0.40 2.07 16 34 H 0.03 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.05 1.22 7.14 -51.93 -0.37 0.85 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.08 1.59 6.11 -51.93 -0.32 1.28 16 38 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.03 8.00 -51.93 -0.42 0.62 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -28.93 366.50 -11.20 -40.12 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.40 Total: 2.79 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -5.28 Total: -6.73 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.06 Total: -55.96 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.93 -11.20 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.076 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds