Wall clock time and date at job start Sat Apr 11 2020 02:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48504 * 109.47546 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47091 * 300.00232 * 3 2 1 6 6 H 1.48497 * 109.47023 * 60.00230 * 3 2 1 7 7 C 1.37884 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99872 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47174 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46995 * 300.00203 * 10 9 7 12 12 C 1.53004 * 109.46991 * 299.99741 * 11 10 9 13 13 N 1.46900 * 109.47115 * 180.02562 * 12 11 10 14 14 C 1.46932 * 111.00279 * 53.96696 * 13 12 11 15 15 C 1.52885 * 108.62022 * 52.06570 * 14 13 12 16 16 C 1.50751 * 109.89337 * 50.42776 * 15 14 13 17 17 C 1.38730 * 118.39737 * 163.19111 * 16 15 14 18 18 C 1.38308 * 120.41679 * 179.79720 * 17 16 15 19 19 C 1.39311 * 119.65047 * 0.02562 * 18 17 16 20 20 C 1.38296 * 119.67490 * 0.09355 * 19 18 17 21 21 C 1.37858 * 121.64190 * 343.11882 * 16 15 14 22 22 C 1.46617 * 111.00073 * 176.88995 * 13 12 11 23 23 O 1.36503 * 108.62881 * 180.02562 * 19 18 17 24 24 C 1.43985 * 105.49073 * 17.25889 * 23 19 18 25 25 O 1.36498 * 131.71820 * 180.02562 * 18 17 16 26 26 C 1.52997 * 109.47135 * 60.00185 * 12 11 10 27 27 C 1.52998 * 109.47372 * 299.99930 * 26 12 11 28 28 H 0.96993 * 119.99957 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47219 * 300.00147 * 9 7 2 30 30 H 1.09000 * 109.46995 * 180.02562 * 10 9 7 31 31 H 1.09004 * 109.46606 * 59.99855 * 10 9 7 32 32 H 1.09000 * 109.47289 * 179.97438 * 11 10 9 33 33 H 1.08995 * 109.47548 * 59.99638 * 11 10 9 34 34 H 1.09007 * 109.47177 * 299.99968 * 12 11 10 35 35 H 1.09000 * 109.50275 * 292.37132 * 14 13 12 36 36 H 1.09000 * 109.64532 * 171.84973 * 14 13 12 37 37 H 1.08993 * 109.39060 * 290.31716 * 15 14 13 38 38 H 1.09006 * 109.38519 * 170.52499 * 15 14 13 39 39 H 1.08005 * 119.78770 * 359.81393 * 17 16 15 40 40 H 1.08000 * 119.77801 * 180.02562 * 20 19 18 41 41 H 1.09008 * 109.27178 * 168.91547 * 22 13 12 42 42 H 1.09002 * 109.27318 * 49.44054 * 22 13 12 43 43 H 1.09005 * 110.56543 * 91.44062 * 24 23 19 44 44 H 1.09001 * 110.57472 * 214.15897 * 24 23 19 45 45 H 1.09000 * 109.46865 * 59.99888 * 26 12 11 46 46 H 1.09005 * 109.47208 * 179.97438 * 26 12 11 47 47 H 1.09001 * 109.47022 * 300.00601 * 27 26 12 48 48 H 1.09000 * 109.47630 * 179.97438 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 3.1240 -3.5804 -1.2517 12 6 2.2434 -3.6610 -2.5003 13 7 3.0871 -3.5832 -3.7003 14 6 4.1474 -4.5998 -3.6655 15 6 3.5082 -5.9629 -3.3995 16 6 2.3645 -6.1884 -4.3554 17 6 1.8871 -7.4805 -4.5199 18 6 0.8367 -7.7343 -5.3831 19 6 0.2568 -6.6837 -6.0906 20 6 0.7384 -5.3980 -5.9243 21 6 1.7925 -5.1486 -5.0569 22 6 2.2838 -3.7312 -4.9179 23 8 -0.7491 -7.1832 -6.8665 24 6 -1.0465 -8.4822 -6.3212 25 8 0.1943 -8.8916 -5.7165 26 6 1.2492 -2.4981 -2.4990 27 6 0.3705 -2.5796 -1.2492 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 0.8896 30 1 1.7004 -4.6061 -0.0023 31 1 2.8727 -3.6047 0.8877 32 1 3.8327 -4.4087 -1.2524 33 1 3.6690 -2.6365 -1.2517 34 1 1.6984 -4.6050 -2.5003 35 1 4.8517 -4.3638 -2.8678 36 1 4.6675 -4.6198 -4.6231 37 1 3.1357 -5.9943 -2.3757 38 1 4.2544 -6.7455 -3.5372 39 1 2.3386 -8.2934 -3.9704 40 1 0.2898 -4.5822 -6.4717 41 1 2.8934 -3.4752 -5.7845 42 1 1.4285 -3.0572 -4.8687 43 1 -1.8334 -8.4112 -5.5703 44 1 -1.3357 -9.1731 -7.1132 45 1 1.7942 -1.5541 -2.4990 46 1 0.6221 -2.5552 -3.3888 47 1 -0.1744 -3.5237 -1.2491 48 1 -0.3375 -1.7509 -1.2480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:22 Heat of formation + Delta-G solvation = -54.175731 kcal Electronic energy + Delta-G solvation = -29451.502816 eV Core-core repulsion = 25664.007719 eV Total energy + Delta-G solvation = -3787.495097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.20901 -41.42700 -39.04098 -37.32234 -36.94359 -34.18159 -33.74712 -31.70770 -31.41487 -29.92895 -29.64926 -27.15471 -26.71789 -25.07969 -24.59658 -23.68192 -22.78246 -22.68913 -20.90257 -20.14566 -18.61186 -18.41897 -18.18215 -17.70119 -17.26402 -16.74654 -16.50263 -16.11383 -15.84728 -15.49620 -15.26260 -14.93489 -14.80963 -14.76202 -14.69764 -14.36901 -14.03673 -13.85938 -13.59267 -13.43303 -13.16930 -13.06260 -12.83621 -12.78165 -12.63573 -12.38494 -12.32465 -12.26470 -11.79277 -11.77193 -11.70397 -11.38375 -11.30427 -10.91386 -10.61737 -10.35912 -10.24030 -9.78012 -9.16029 -8.96238 -7.97749 -6.06833 0.06065 0.14951 1.43100 1.46782 1.56224 1.72842 2.45920 2.48190 2.50723 3.07424 3.31152 3.43896 3.72078 3.77760 3.86009 3.97246 4.05449 4.11356 4.16792 4.20670 4.24143 4.35039 4.54844 4.55588 4.62109 4.72479 4.75396 4.82350 4.85497 4.90028 4.95834 4.96994 5.00067 5.04253 5.07720 5.10417 5.12174 5.20805 5.25464 5.37554 5.46419 5.59320 5.64782 5.73111 5.76445 5.80902 6.02998 6.08724 6.22896 6.30116 6.34676 6.52124 7.03145 7.58929 9.07386 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.019210 B = 0.003317 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.233084 B = 8438.804768 C = 8800.139535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.498 4.498 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.101 4.101 11 C -0.092 4.092 12 C 0.104 3.896 13 N -0.529 5.529 14 C 0.050 3.950 15 C -0.112 4.112 16 C -0.067 4.067 17 C -0.104 4.104 18 C 0.014 3.986 19 C 0.012 3.988 20 C -0.103 4.103 21 C -0.099 4.099 22 C 0.091 3.909 23 O -0.325 6.325 24 C 0.204 3.796 25 O -0.323 6.323 26 C -0.082 4.082 27 C -0.101 4.101 28 H 0.255 0.745 29 H -0.016 1.016 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.165 0.835 45 H 0.050 0.950 46 H 0.040 0.960 47 H 0.017 0.983 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -16.460 -13.048 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.003 4.003 13 N -0.250 5.250 14 C -0.077 4.077 15 C -0.150 4.150 16 C -0.067 4.067 17 C -0.122 4.122 18 C -0.030 4.030 19 C -0.033 4.033 20 C -0.122 4.122 21 C -0.102 4.102 22 C -0.037 4.037 23 O -0.242 6.242 24 C 0.094 3.906 25 O -0.240 6.240 26 C -0.119 4.119 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.002 0.998 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.182 0.818 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.311 -15.993 -13.213 21.188 hybrid contribution -0.968 0.184 0.160 0.998 sum 3.342 -15.809 -13.053 20.772 Atomic orbital electron populations 1.70024 1.07100 1.26414 1.52689 1.25604 0.95390 1.01791 0.95651 0.85767 0.79502 0.80892 0.77091 1.18987 1.21166 1.21390 1.21427 0.92778 0.91293 1.48149 0.92661 1.18683 0.93150 0.93364 0.92768 1.21456 0.97764 0.97227 0.97487 1.21443 0.97198 1.01609 0.92733 1.21429 0.93097 0.96319 0.89500 1.62584 1.12833 1.48087 1.01456 1.22312 0.94093 0.87552 1.03787 1.21166 0.95508 1.00646 0.97714 1.19511 0.98070 0.91082 0.98044 1.20191 0.96304 0.97800 0.97911 1.19890 0.99013 0.84044 1.00077 1.19879 0.93291 0.95093 0.94991 1.20154 0.98131 0.93143 1.00762 1.20320 0.95381 0.97929 0.96523 1.21236 0.98288 0.90072 0.94119 1.87312 1.51834 1.33173 1.51875 1.26079 0.85943 0.81462 0.97128 1.87299 1.33150 1.26980 1.76536 1.21260 0.96338 0.98382 0.95952 1.21347 0.98446 0.97976 0.96171 0.93568 0.99768 0.93743 0.93296 0.90950 0.92429 0.94746 0.88975 0.89166 0.90146 0.87646 0.83228 0.83828 0.87509 0.89728 0.88540 0.81832 0.93141 0.94115 0.96461 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 2 C 0.01 0.71 5.30 84.66 0.45 1.16 16 3 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 7 C -0.50 -26.43 6.61 25.60 0.17 -26.26 16 8 H 0.06 2.89 6.71 -2.91 -0.02 2.87 16 9 C 0.04 1.91 2.59 -11.54 -0.03 1.88 16 10 C -0.10 -3.98 5.41 30.59 0.17 -3.82 16 11 C -0.09 -3.15 4.33 30.59 0.13 -3.02 16 12 C 0.10 3.46 1.22 44.92 0.05 3.51 16 13 N -0.53 -14.63 4.88 -876.49 -4.28 -18.91 16 14 C 0.05 1.07 5.39 86.26 0.46 1.53 16 15 C -0.11 -2.23 5.04 29.83 0.15 -2.08 16 16 C -0.07 -1.55 5.05 -19.82 -0.10 -1.65 16 17 C -0.10 -2.40 9.66 22.40 0.22 -2.18 16 18 C 0.01 0.35 7.15 22.54 0.16 0.52 16 19 C 0.01 0.31 7.15 22.54 0.16 0.47 16 20 C -0.10 -2.59 9.65 22.41 0.22 -2.37 16 21 C -0.10 -2.47 5.24 -19.84 -0.10 -2.57 16 22 C 0.09 2.27 5.39 85.60 0.46 2.73 16 23 O -0.33 -7.88 11.40 -76.09 -0.87 -8.75 16 24 C 0.20 3.52 8.89 113.37 1.01 4.53 16 25 O -0.32 -7.53 11.40 -76.03 -0.87 -8.39 16 26 C -0.08 -3.33 4.86 30.59 0.15 -3.18 16 27 C -0.10 -4.76 5.24 30.59 0.16 -4.60 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 29 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.87 16 32 H 0.07 1.99 5.61 -2.39 -0.01 1.98 16 33 H 0.06 2.24 6.62 -2.39 -0.02 2.23 16 34 H 0.03 1.16 5.75 -2.38 -0.01 1.15 16 35 H 0.09 1.89 6.69 -2.39 -0.02 1.88 16 36 H 0.09 1.64 8.04 -2.39 -0.02 1.62 16 37 H 0.08 1.76 6.00 -2.39 -0.01 1.75 16 38 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 41 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 42 H 0.08 2.30 5.90 -2.39 -0.01 2.29 16 43 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.16 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.05 2.35 7.22 -2.39 -0.02 2.33 16 46 H 0.04 1.55 6.26 -2.38 -0.01 1.53 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.06 3.06 6.06 -2.39 -0.01 3.05 16 Total: -1.00 -64.20 354.49 1.12 -63.09 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.98 Total: 15.68 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.89 Total: -35.40 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -4.04 Total: -71.96 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.73 Total: -17.14 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.20 1.12 -63.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.910 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds