Wall clock time and date at job start Sat Apr 11 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47156 * 240.00004 * 3 2 1 5 5 H 1.48495 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47334 * 119.99899 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46729 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47654 * 299.99871 * 11 10 9 13 13 N 1.46892 * 109.47287 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99668 * 154.99909 * 13 12 11 15 15 C 1.53008 * 109.46937 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46684 * 65.00359 * 15 14 13 17 17 C 1.35956 * 116.99309 * 179.97438 * 16 15 14 18 18 C 1.38305 * 120.07521 * 359.97438 * 17 16 15 19 19 C 1.38694 * 120.63140 * 180.02562 * 18 17 16 20 20 C 1.37731 * 120.31650 * 359.93981 * 19 18 17 21 21 C 1.39515 * 119.70509 * 0.03638 * 20 19 18 22 22 C 1.46782 * 134.29295 * 179.97438 * 21 20 19 23 23 C 1.34011 * 106.18986 * 180.02562 * 22 21 20 24 24 O 1.34421 * 110.12734 * 359.97438 * 23 22 21 25 25 C 1.34891 * 110.88070 * 0.02562 * 24 23 22 26 26 C 1.52997 * 109.46712 * 60.00032 * 12 11 10 27 27 C 1.52998 * 109.47526 * 300.00153 * 26 12 11 28 28 H 0.97000 * 120.00405 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46863 * 60.00009 * 9 7 2 30 30 H 1.08998 * 109.46873 * 60.00041 * 10 9 7 31 31 H 1.09000 * 109.46724 * 300.00016 * 10 9 7 32 32 H 1.09000 * 109.46985 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47303 * 60.00435 * 11 10 9 34 34 H 1.09002 * 109.46734 * 300.00640 * 12 11 10 35 35 H 1.00896 * 111.00554 * 278.95791 * 13 12 11 36 36 H 1.08997 * 109.46893 * 60.00510 * 14 13 12 37 37 H 1.09002 * 109.47187 * 300.00158 * 14 13 12 38 38 H 1.08994 * 109.47190 * 305.00346 * 15 14 13 39 39 H 1.09000 * 109.46812 * 184.99552 * 15 14 13 40 40 H 1.08000 * 119.68315 * 0.03829 * 18 17 16 41 41 H 1.07998 * 119.83864 * 179.97438 * 19 18 17 42 42 H 1.08004 * 120.14642 * 180.31661 * 20 19 18 43 43 H 1.08002 * 126.90681 * 0.02562 * 22 21 20 44 44 H 1.07995 * 124.93171 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47501 * 60.00575 * 26 12 11 46 46 H 1.08996 * 109.47195 * 180.02562 * 26 12 11 47 47 H 1.09002 * 109.47485 * 300.00351 * 27 26 12 48 48 H 1.09000 * 109.47476 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0025 12 6 0.6002 -5.0673 1.2514 13 7 -0.1347 -6.3392 1.2516 14 6 -0.5021 -6.7345 2.6179 15 6 -1.2637 -8.0610 2.5776 16 8 -0.3964 -9.0939 2.1054 17 6 -0.9212 -10.3445 2.0096 18 6 -2.2391 -10.5720 2.3622 19 6 -2.7860 -11.8431 2.2695 20 6 -2.0216 -12.8981 1.8226 21 6 -0.6907 -12.6839 1.4629 22 6 0.3868 -13.5451 0.9611 23 6 1.4546 -12.7517 0.7996 24 8 1.1503 -11.4897 1.1484 25 6 -0.1326 -11.3995 1.5553 26 6 -0.3940 -3.9044 1.2501 27 6 0.3709 -2.5793 1.2495 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 2.8713 -3.6039 0.8923 31 1 2.8727 -3.6046 -0.8877 32 1 2.1887 -5.8155 0.0029 33 1 0.8542 -5.0455 -0.8878 34 1 1.2265 -5.0088 2.1416 35 1 -0.9496 -6.2861 0.6590 36 1 -1.1347 -5.9654 3.0610 37 1 0.4007 -6.8524 3.2172 38 1 -2.1181 -7.9692 1.9071 39 1 -1.6132 -8.3099 3.5796 40 1 -2.8481 -9.7519 2.7128 41 1 -3.8165 -12.0064 2.5486 42 1 -2.4518 -13.8858 1.7467 43 1 0.3304 -14.6051 0.7621 44 1 2.4192 -13.0787 0.4405 45 1 -1.0204 -3.9628 0.3599 46 1 -1.0208 -3.9612 2.1400 47 1 0.9972 -2.5209 2.1397 48 1 -0.3375 -1.7509 1.2490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:25 Heat of formation + Delta-G solvation = -23.687617 kcal Electronic energy + Delta-G solvation = -27185.663030 eV Core-core repulsion = 23399.489997 eV Total energy + Delta-G solvation = -3786.173033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.61594 -39.74028 -38.22232 -37.10615 -34.95015 -32.71425 -32.35216 -30.66251 -29.68571 -29.51154 -29.17624 -27.22588 -24.29949 -23.43387 -23.10859 -21.74413 -21.47709 -21.32323 -20.55996 -18.78245 -18.41526 -17.59694 -16.90760 -16.57679 -16.28915 -15.82338 -15.48478 -15.40145 -14.74260 -14.45575 -14.30400 -13.82917 -13.54403 -13.32080 -13.06249 -12.94270 -12.82983 -12.59506 -12.48781 -12.19678 -12.07721 -11.69357 -11.59429 -11.41110 -11.22694 -11.13023 -10.94473 -10.71585 -10.42282 -10.26453 -10.10800 -10.01516 -9.89940 -9.35250 -8.96503 -8.82982 -8.65472 -8.29731 -8.03475 -7.94756 -5.94663 -4.00555 0.71154 1.10544 2.13710 2.56941 2.97662 3.33513 3.37911 3.40944 3.44928 4.20517 4.28561 4.46795 4.51134 4.56271 4.80682 4.91742 4.94383 5.01374 5.06003 5.17587 5.21239 5.33536 5.39239 5.43579 5.48686 5.70085 5.75650 5.86637 5.91107 5.98133 6.08686 6.18658 6.22110 6.31202 6.35681 6.39181 6.44763 6.66975 6.71708 6.75222 6.87554 6.96703 7.15844 7.24484 7.27236 7.40185 7.55040 7.66103 7.78485 8.06778 8.18933 8.51942 9.03705 9.63761 11.10682 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.001979 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.123289 B =14144.675856 C =14892.808342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.091 3.909 13 N -0.682 5.682 14 C 0.059 3.941 15 C 0.063 3.937 16 O -0.290 6.290 17 C 0.157 3.843 18 C -0.200 4.200 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.224 4.224 23 C 0.019 3.981 24 O -0.181 6.181 25 C 0.023 3.977 26 C -0.143 4.143 27 C -0.105 4.105 28 H 0.259 0.741 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.336 0.664 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.209 0.791 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -26.509 5.629 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.138 4.138 12 C -0.018 4.018 13 N -0.312 5.312 14 C -0.071 4.071 15 C -0.013 4.013 16 O -0.203 6.203 17 C 0.110 3.890 18 C -0.219 4.219 19 C -0.110 4.110 20 C -0.139 4.139 21 C -0.095 4.095 22 C -0.243 4.243 23 C -0.047 4.047 24 O -0.081 6.081 25 C -0.025 4.025 26 C -0.182 4.182 27 C -0.144 4.144 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.154 0.846 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.176 0.824 44 H 0.225 0.775 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.578 -26.454 5.579 27.421 hybrid contribution -0.584 1.417 0.257 1.554 sum -5.162 -25.038 5.837 26.222 Atomic orbital electron populations 1.69865 1.05843 1.26313 1.51122 1.24975 0.94843 0.98977 0.95302 0.86709 0.79634 0.83367 0.78571 1.20339 1.21402 1.20370 1.21230 0.92871 0.90838 1.50030 0.92859 1.18649 0.92650 0.91583 0.94094 1.21632 0.98619 0.94373 1.00075 1.21473 0.97910 0.97893 0.96520 1.21643 0.95002 0.85889 0.99275 1.60657 1.28467 1.33322 1.08786 1.21999 1.00057 0.92443 0.92559 1.22979 0.93058 0.86633 0.98610 1.86325 1.39383 1.13793 1.80755 1.17820 0.90609 0.83471 0.97083 1.20968 0.93231 0.99260 1.08473 1.20776 0.99767 0.91625 0.98809 1.20368 0.91676 0.99554 1.02313 1.19773 0.95341 0.91862 1.02519 1.22479 0.92127 1.00599 1.09062 1.24079 1.00407 0.80920 0.99310 1.84122 1.26159 1.29814 1.68052 1.18715 0.83773 0.93968 1.05994 1.22295 0.98126 0.98146 0.99669 1.21550 0.99468 0.94527 0.98835 0.93115 0.95819 0.93560 0.93389 0.93002 0.92862 0.91172 0.84587 0.92814 0.89981 0.91839 0.91570 0.84371 0.85162 0.85517 0.82373 0.77483 0.92795 0.94431 0.94941 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 10 C -0.11 -2.31 5.14 -26.73 -0.14 -2.45 16 11 C -0.10 -1.84 5.53 -26.73 -0.15 -1.98 16 12 C 0.09 1.55 2.47 -67.72 -0.17 1.38 16 13 N -0.68 -10.00 6.20 -106.72 -0.66 -10.66 16 14 C 0.06 0.72 5.87 -3.82 -0.02 0.69 16 15 C 0.06 0.66 5.02 37.16 0.19 0.84 16 16 O -0.29 -3.95 10.09 -19.60 -0.20 -4.14 16 17 C 0.16 1.98 6.70 -39.15 -0.26 1.72 16 18 C -0.20 -1.97 9.03 -39.39 -0.36 -2.33 16 19 C -0.09 -0.79 10.03 -39.60 -0.40 -1.18 16 20 C -0.12 -1.11 10.10 -39.29 -0.40 -1.50 16 21 C -0.09 -1.03 6.39 -105.17 -0.67 -1.71 16 22 C -0.22 -1.94 11.14 -37.62 -0.42 -2.36 16 23 C 0.02 0.16 11.96 29.25 0.35 0.51 16 24 O -0.18 -2.36 10.58 3.75 0.04 -2.32 16 25 C 0.02 0.30 7.35 -38.38 -0.28 0.02 16 26 C -0.14 -2.68 5.17 -26.73 -0.14 -2.81 16 27 C -0.11 -2.44 4.98 -26.73 -0.13 -2.58 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.23 7.80 -51.93 -0.41 0.82 16 35 H 0.34 4.68 8.47 -39.29 -0.33 4.35 16 36 H 0.05 0.60 7.44 -51.93 -0.39 0.22 16 37 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 38 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 39 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 40 H 0.14 1.06 6.26 -52.49 -0.33 0.73 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.16 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 46 H 0.04 0.64 7.45 -51.93 -0.39 0.25 16 47 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -31.55 384.00 -10.56 -42.11 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.56 Total: 3.29 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.58 Total: -25.59 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.03 Total: -35.55 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.16 Total: -6.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.55 -10.56 -42.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.425 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds