Wall clock time and date at job start Sat Apr 11 2020 02:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48503 * 109.47156 * 240.00004 * 3 2 1 5 5 H 1.48495 * 109.47210 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47334 * 119.99899 * 3 2 1 7 7 C 1.37878 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47004 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46729 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47654 * 299.99871 * 11 10 9 13 13 N 1.46892 * 109.47287 * 179.97438 * 12 11 10 14 14 C 1.46903 * 110.99668 * 154.99909 * 13 12 11 15 15 C 1.53008 * 109.46937 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46684 * 65.00359 * 15 14 13 17 17 C 1.35956 * 116.99309 * 179.97438 * 16 15 14 18 18 C 1.38305 * 120.07521 * 359.97438 * 17 16 15 19 19 C 1.38694 * 120.63140 * 180.02562 * 18 17 16 20 20 C 1.37731 * 120.31650 * 359.93981 * 19 18 17 21 21 C 1.39515 * 119.70509 * 0.03638 * 20 19 18 22 22 C 1.46782 * 134.29295 * 179.97438 * 21 20 19 23 23 C 1.34011 * 106.18986 * 180.02562 * 22 21 20 24 24 O 1.34421 * 110.12734 * 359.97438 * 23 22 21 25 25 C 1.34891 * 110.88070 * 0.02562 * 24 23 22 26 26 C 1.52997 * 109.46712 * 60.00032 * 12 11 10 27 27 C 1.52998 * 109.47526 * 300.00153 * 26 12 11 28 28 H 0.97000 * 120.00405 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46863 * 60.00009 * 9 7 2 30 30 H 1.08998 * 109.46873 * 60.00041 * 10 9 7 31 31 H 1.09000 * 109.46724 * 300.00016 * 10 9 7 32 32 H 1.09000 * 109.46985 * 179.97438 * 11 10 9 33 33 H 1.08998 * 109.47303 * 60.00435 * 11 10 9 34 34 H 1.09002 * 109.46734 * 300.00640 * 12 11 10 35 35 H 1.00896 * 111.00554 * 278.95791 * 13 12 11 36 36 H 1.08997 * 109.46893 * 60.00510 * 14 13 12 37 37 H 1.09002 * 109.47187 * 300.00158 * 14 13 12 38 38 H 1.08994 * 109.47190 * 305.00346 * 15 14 13 39 39 H 1.09000 * 109.46812 * 184.99552 * 15 14 13 40 40 H 1.08000 * 119.68315 * 0.03829 * 18 17 16 41 41 H 1.07998 * 119.83864 * 179.97438 * 19 18 17 42 42 H 1.08004 * 120.14642 * 180.31661 * 20 19 18 43 43 H 1.08002 * 126.90681 * 0.02562 * 22 21 20 44 44 H 1.07995 * 124.93171 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47501 * 60.00575 * 26 12 11 46 46 H 1.08996 * 109.47195 * 180.02562 * 26 12 11 47 47 H 1.09002 * 109.47485 * 300.00351 * 27 26 12 48 48 H 1.09000 * 109.47476 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4804 -4.9870 0.0025 12 6 0.6002 -5.0673 1.2514 13 7 -0.1347 -6.3392 1.2516 14 6 -0.5021 -6.7345 2.6179 15 6 -1.2637 -8.0610 2.5776 16 8 -0.3964 -9.0939 2.1054 17 6 -0.9212 -10.3445 2.0096 18 6 -2.2391 -10.5720 2.3622 19 6 -2.7860 -11.8431 2.2695 20 6 -2.0216 -12.8981 1.8226 21 6 -0.6907 -12.6839 1.4629 22 6 0.3868 -13.5451 0.9611 23 6 1.4546 -12.7517 0.7996 24 8 1.1503 -11.4897 1.1484 25 6 -0.1326 -11.3995 1.5553 26 6 -0.3940 -3.9044 1.2501 27 6 0.3709 -2.5793 1.2495 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 2.8713 -3.6039 0.8923 31 1 2.8727 -3.6046 -0.8877 32 1 2.1887 -5.8155 0.0029 33 1 0.8542 -5.0455 -0.8878 34 1 1.2265 -5.0088 2.1416 35 1 -0.9496 -6.2861 0.6590 36 1 -1.1347 -5.9654 3.0610 37 1 0.4007 -6.8524 3.2172 38 1 -2.1181 -7.9692 1.9071 39 1 -1.6132 -8.3099 3.5796 40 1 -2.8481 -9.7519 2.7128 41 1 -3.8165 -12.0064 2.5486 42 1 -2.4518 -13.8858 1.7467 43 1 0.3304 -14.6051 0.7621 44 1 2.4192 -13.0787 0.4405 45 1 -1.0204 -3.9628 0.3599 46 1 -1.0208 -3.9612 2.1400 47 1 0.9972 -2.5209 2.1397 48 1 -0.3375 -1.7509 1.2490 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173332672.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:25 Heat of formation + Delta-G solvation = -41.833053 kcal Electronic energy + Delta-G solvation = -27186.449875 eV Core-core repulsion = 23399.489997 eV Total energy + Delta-G solvation = -3786.959878 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.34812 -40.58109 -39.71036 -37.91086 -36.39692 -34.34952 -33.28015 -31.79106 -31.30907 -30.60964 -29.94875 -28.62325 -26.06703 -24.28241 -23.95683 -23.21718 -22.45150 -22.16574 -22.12807 -20.48305 -19.18521 -18.38906 -18.36642 -17.61204 -17.41047 -16.86930 -16.64740 -16.41266 -16.07439 -15.68043 -15.34184 -15.09005 -14.89822 -14.46176 -14.35774 -14.09366 -14.00230 -13.84659 -13.60244 -13.38043 -13.12871 -12.94813 -12.88939 -12.80216 -12.59493 -12.36675 -12.33338 -12.15475 -11.94528 -11.84279 -11.79008 -11.69533 -11.18448 -10.79495 -10.72222 -10.58139 -10.36960 -9.56551 -9.22639 -8.76986 -8.06936 -6.21048 -0.00267 0.36697 1.40560 1.41627 1.46958 1.49249 1.90728 2.19669 2.43340 2.72507 3.15665 3.19609 3.59042 3.79797 3.88323 3.92595 4.08764 4.11059 4.15727 4.20224 4.35779 4.37869 4.41142 4.48302 4.55009 4.60018 4.63108 4.70014 4.76710 4.79238 4.82017 4.88954 4.98579 5.10740 5.18072 5.22935 5.25150 5.32444 5.39191 5.45288 5.46393 5.50412 5.60512 5.68681 5.72287 6.01626 6.04373 6.12625 6.21196 6.42151 6.47094 6.54806 6.91202 7.46533 8.96261 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027962 B = 0.001979 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.123289 B =14144.675856 C =14892.808342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.046 3.954 10 C -0.101 4.101 11 C -0.093 4.093 12 C 0.104 3.896 13 N -0.685 5.685 14 C 0.058 3.942 15 C 0.063 3.937 16 O -0.319 6.319 17 C 0.127 3.873 18 C -0.198 4.198 19 C -0.091 4.091 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.225 4.225 23 C 0.010 3.990 24 O -0.215 6.215 25 C -0.018 4.018 26 C -0.130 4.130 27 C -0.098 4.098 28 H 0.260 0.740 29 H -0.009 1.009 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.342 0.658 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.189 0.811 44 H 0.245 0.755 45 H 0.048 0.952 46 H 0.058 0.942 47 H 0.026 0.974 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -28.413 6.420 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.027 3.973 10 C -0.140 4.140 11 C -0.131 4.131 12 C -0.006 4.006 13 N -0.316 5.316 14 C -0.071 4.071 15 C -0.011 4.011 16 O -0.233 6.233 17 C 0.081 3.919 18 C -0.217 4.217 19 C -0.109 4.109 20 C -0.142 4.142 21 C -0.113 4.113 22 C -0.244 4.244 23 C -0.054 4.054 24 O -0.117 6.117 25 C -0.065 4.065 26 C -0.170 4.170 27 C -0.137 4.137 28 H 0.069 0.931 29 H 0.009 0.991 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.171 0.829 43 H 0.206 0.794 44 H 0.261 0.739 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.045 0.955 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.413 -28.382 6.374 29.588 hybrid contribution -0.354 1.946 -0.003 1.978 sum -5.767 -26.436 6.371 27.798 Atomic orbital electron populations 1.70007 1.07058 1.27016 1.51508 1.25740 0.95719 1.02292 0.94978 0.85716 0.78473 0.79317 0.78772 1.19827 1.20909 1.19685 1.21619 0.92990 0.92488 1.50310 0.93262 1.18625 0.93070 0.92192 0.93397 1.21500 0.97960 0.94587 0.99904 1.21378 0.98068 0.96392 0.97243 1.21386 0.94519 0.86380 0.98324 1.60592 1.29031 1.31279 1.10656 1.22072 1.00312 0.93839 0.90865 1.23057 0.92649 0.85175 1.00260 1.86261 1.40842 1.14700 1.81545 1.18177 0.91812 0.83112 0.98770 1.21307 0.92325 1.00600 1.07418 1.21216 1.01170 0.90871 0.97667 1.20792 0.91031 1.01057 1.01302 1.20252 0.96611 0.91635 1.02766 1.22895 0.91269 1.01810 1.08423 1.24906 1.02110 0.79665 0.98761 1.84078 1.26627 1.32014 1.68946 1.19229 0.84288 0.95332 1.07622 1.22149 0.98156 0.96268 1.00390 1.21340 0.98700 0.96042 0.97604 0.93137 0.99091 0.93496 0.93756 0.91848 0.93240 0.91267 0.83980 0.91333 0.90780 0.90627 0.89118 0.82309 0.81899 0.82905 0.79410 0.73867 0.93366 0.92333 0.95548 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.54 -30.31 8.56 25.60 0.22 -30.09 16 8 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 9 C 0.05 2.33 2.10 -11.54 -0.02 2.31 16 10 C -0.10 -4.35 5.14 30.59 0.16 -4.19 16 11 C -0.09 -3.38 5.53 30.59 0.17 -3.21 16 12 C 0.10 3.44 2.47 44.92 0.11 3.55 16 13 N -0.69 -19.24 6.20 -491.57 -3.05 -22.29 16 14 C 0.06 1.32 5.87 86.31 0.51 1.82 16 15 C 0.06 1.22 5.02 71.98 0.36 1.58 16 16 O -0.32 -8.64 10.09 -93.06 -0.94 -9.58 16 17 C 0.13 3.19 6.70 22.55 0.15 3.34 16 18 C -0.20 -3.56 9.03 22.39 0.20 -3.35 16 19 C -0.09 -1.34 10.03 22.26 0.22 -1.11 16 20 C -0.12 -2.01 10.10 22.46 0.23 -1.78 16 21 C -0.11 -2.37 6.39 -20.22 -0.13 -2.49 16 22 C -0.23 -3.61 11.14 23.54 0.26 -3.34 16 23 C 0.01 0.17 11.96 66.86 0.80 0.97 16 24 O -0.21 -5.77 10.58 -9.50 -0.10 -5.87 16 25 C -0.02 -0.48 7.35 23.05 0.17 -0.31 16 26 C -0.13 -4.82 5.17 30.59 0.16 -4.66 16 27 C -0.10 -4.65 4.98 30.60 0.15 -4.50 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.35 7.80 -2.39 -0.02 2.33 16 35 H 0.34 9.05 8.47 -89.70 -0.76 8.29 16 36 H 0.07 1.37 7.44 -2.39 -0.02 1.35 16 37 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 38 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 39 H 0.09 1.28 7.66 -2.39 -0.02 1.26 16 40 H 0.16 2.01 6.26 -2.91 -0.02 1.99 16 41 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.25 1.69 8.06 -2.91 -0.02 1.66 16 45 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 46 H 0.06 1.91 7.45 -2.39 -0.02 1.90 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 Total: -1.00 -71.18 384.00 2.54 -68.64 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.20 Total: 20.45 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 4.16 Total: -44.40 kcal Atomic # 7 Polarization: -72.83 SS G_CDS: -2.80 Total: -75.63 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.04 Total: -15.45 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.18 2.54 -68.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332672.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.806 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds