Wall clock time and date at job start Sat Apr 11 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47438 * 240.00220 * 3 2 1 5 5 H 1.48504 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47214 * 119.99889 * 3 2 1 7 7 C 1.37880 * 119.99917 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84975 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53713 * 231.32769 * 8 7 2 10 10 C 1.52963 * 109.40235 * 305.37442 * 9 8 7 11 11 H 1.08996 * 109.35683 * 303.52237 * 10 9 8 12 12 N 1.46502 * 109.40999 * 183.70441 * 10 9 8 13 13 C 1.34779 * 120.00357 * 84.64689 * 12 10 9 14 14 O 1.21279 * 119.99636 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00344 * 179.97438 * 13 12 10 16 16 H 1.09004 * 109.67849 * 300.50988 * 15 13 12 17 17 C 1.53320 * 109.70743 * 61.04439 * 15 13 12 18 18 C 1.52740 * 108.38511 * 189.58622 * 17 15 13 19 19 C 1.50633 * 110.52932 * 308.67089 * 18 17 15 20 20 C 1.38912 * 117.75080 * 197.29831 * 19 18 17 21 21 C 1.37936 * 120.54395 * 180.78438 * 20 19 18 22 22 C 1.38263 * 119.77040 * 0.21745 * 21 20 19 23 23 C 1.37942 * 119.77097 * 359.85921 * 22 21 20 24 24 C 1.37663 * 122.55695 * 18.32717 * 19 18 17 25 25 C 1.50626 * 122.55834 * 358.64594 * 24 19 18 26 26 H 1.09007 * 109.24711 * 257.84732 * 25 24 19 27 27 O 1.42898 * 109.25569 * 138.38506 * 25 24 19 28 28 C 1.52961 * 109.82033 * 63.59750 * 10 9 8 29 29 C 1.51273 * 120.84767 * 0.02562 * 7 2 1 30 30 H 0.96993 * 119.99503 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.62759 * 351.04148 * 8 7 2 32 32 H 1.08995 * 109.62496 * 111.61712 * 8 7 2 33 33 H 1.09000 * 109.48578 * 185.39179 * 9 8 7 34 34 H 1.09002 * 109.48252 * 65.35017 * 9 8 7 35 35 H 0.97006 * 119.99858 * 264.64458 * 12 10 9 36 36 H 1.09003 * 109.68062 * 309.30871 * 17 15 13 37 37 H 1.08996 * 109.68156 * 69.82805 * 17 15 13 38 38 H 1.08996 * 109.25385 * 69.15172 * 18 17 15 39 39 H 1.09010 * 109.24999 * 188.57681 * 18 17 15 40 40 H 1.08002 * 119.73195 * 1.06728 * 20 19 18 41 41 H 1.07994 * 120.11477 * 180.19700 * 21 20 19 42 42 H 1.08000 * 120.11418 * 179.84078 * 22 21 20 43 43 H 1.07998 * 119.72669 * 180.02562 * 23 22 21 44 44 H 0.96701 * 114.00076 * 59.99575 * 27 25 24 45 45 H 1.09007 * 109.47821 * 56.37786 * 28 10 9 46 46 H 1.08996 * 109.47892 * 176.40523 * 28 10 9 47 47 H 1.09000 * 109.62702 * 8.95594 * 29 7 2 48 48 H 1.09002 * 109.78160 * 248.47534 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9911 -2.1317 -1.1327 10 6 3.3402 -3.5076 -0.9810 11 1 3.5739 -3.9112 0.0041 12 7 3.8606 -4.4088 -2.0123 13 6 5.0180 -5.0687 -1.8090 14 8 5.6285 -4.9169 -0.7721 15 6 5.5530 -5.9961 -2.8695 16 1 4.8267 -6.7843 -3.0682 17 6 5.8247 -5.2080 -4.1563 18 6 6.1331 -6.2022 -5.2741 19 6 7.2049 -7.1680 -4.8411 20 6 7.8616 -7.8908 -5.8290 21 6 8.8415 -8.8028 -5.4961 22 6 9.1702 -9.0031 -4.1682 23 6 8.5181 -8.2875 -3.1856 24 6 7.5323 -7.3674 -3.5190 25 6 6.8668 -6.6148 -2.3967 26 1 7.5320 -5.8236 -2.0506 27 8 6.6029 -7.5139 -1.3178 28 6 1.8233 -3.3833 -1.1328 29 6 1.2677 -2.5152 0.0005 30 1 -0.4849 0.8400 -0.0004 31 1 3.8983 -0.2080 -0.1588 32 1 3.8771 -1.5999 0.9558 33 1 5.0752 -2.2354 -1.0872 34 1 3.7071 -1.6990 -2.0920 35 1 3.3721 -4.5305 -2.8415 36 1 4.9451 -4.6206 -4.4197 37 1 6.6775 -4.5456 -4.0078 38 1 5.2271 -6.7540 -5.5244 39 1 6.4767 -5.6583 -6.1541 40 1 7.6062 -7.7342 -6.8666 41 1 9.3498 -9.3587 -6.2700 42 1 9.9347 -9.7177 -3.9010 43 1 8.7758 -8.4442 -2.1486 44 1 7.3940 -7.9335 -0.9529 45 1 1.5906 -2.9209 -2.0922 46 1 1.3711 -4.3740 -1.0876 47 1 0.2037 -2.3409 -0.1597 48 1 1.4162 -3.0205 0.9549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183395003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:33 Heat of formation + Delta-G solvation = -88.819033 kcal Electronic energy + Delta-G solvation = -28334.904212 eV Core-core repulsion = 24545.906869 eV Total energy + Delta-G solvation = -3788.997343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83416 -39.30183 -37.22015 -36.37710 -35.56330 -33.62489 -31.84879 -31.52203 -30.57031 -29.64269 -28.82317 -27.19183 -24.26933 -23.50002 -22.25899 -22.07461 -21.47247 -20.34553 -19.58645 -19.27784 -17.90714 -17.32199 -16.27525 -16.07718 -15.84535 -15.38134 -15.14334 -14.69886 -14.58115 -14.40786 -14.18482 -13.61183 -13.40545 -13.36869 -13.10826 -12.79932 -12.66611 -12.63926 -12.23753 -12.06631 -11.94317 -11.74663 -11.58386 -11.51329 -11.26415 -10.99145 -10.80921 -10.77320 -10.65257 -10.19676 -10.15712 -9.99849 -9.73379 -9.41681 -9.08334 -8.96101 -8.88276 -8.79744 -8.47047 -8.28652 -6.10137 -4.00598 1.02864 1.06053 2.98803 3.29626 3.36234 3.38494 3.40200 3.52103 4.08385 4.26743 4.39085 4.39414 4.57439 4.66432 4.74140 4.80434 4.87153 5.04795 5.13325 5.18906 5.21791 5.34115 5.39693 5.49347 5.61008 5.64638 5.69738 5.76335 5.79673 5.90718 5.96157 6.17333 6.19680 6.23119 6.32605 6.49069 6.51228 6.68251 6.73173 6.81401 6.90755 6.98310 7.07362 7.27535 7.44076 7.52319 7.65110 7.72553 7.78952 7.98932 8.38709 8.64389 8.96353 9.55008 10.99584 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002516 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.735516 B =11126.510668 C =11300.976951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.489 4.489 8 C -0.009 4.009 9 C -0.112 4.112 10 C 0.155 3.845 11 H 0.077 0.923 12 N -0.725 5.725 13 C 0.517 3.483 14 O -0.533 6.533 15 C -0.100 4.100 16 H 0.105 0.895 17 C -0.110 4.110 18 C -0.082 4.082 19 C -0.068 4.068 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.108 4.108 25 C 0.167 3.833 26 H 0.076 0.924 27 O -0.546 6.546 28 C -0.114 4.114 29 C 0.013 3.987 30 H 0.265 0.735 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.373 0.627 45 H 0.054 0.946 46 H 0.035 0.965 47 H 0.060 0.940 48 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.117 -16.425 -13.343 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.508 4.508 8 C -0.047 4.047 9 C -0.151 4.151 10 C 0.052 3.948 11 H 0.095 0.905 12 N -0.374 5.374 13 C 0.302 3.698 14 O -0.409 6.409 15 C -0.122 4.122 16 H 0.123 0.877 17 C -0.148 4.148 18 C -0.119 4.119 19 C -0.068 4.068 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.109 4.109 25 C 0.108 3.892 26 H 0.094 0.906 27 O -0.351 6.351 28 C -0.152 4.152 29 C -0.025 4.025 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.221 0.779 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 14.758 -16.000 -12.688 25.195 hybrid contribution 0.876 0.572 -0.454 1.141 sum 15.635 -15.429 -13.142 25.597 Atomic orbital electron populations 1.69822 1.06114 1.27037 1.49862 1.24832 0.94732 0.98531 0.94543 0.86653 0.79371 0.82983 0.79035 1.20029 1.21900 1.19999 1.20035 0.89316 0.91485 1.49928 1.19596 0.96594 0.94510 0.94016 1.21889 0.97241 0.95286 1.00699 1.21025 0.94389 0.88863 0.90513 0.90454 1.46384 1.23681 1.45959 1.21419 1.20186 0.81357 0.80434 0.87804 1.90691 1.58229 1.64339 1.27672 1.21302 0.97741 0.98143 0.95004 0.87712 1.21560 1.03421 0.97519 0.92292 1.20547 0.97180 0.95664 0.98507 1.19644 0.97268 0.97553 0.92305 1.21177 0.96862 0.96804 0.99057 1.21092 0.97803 0.98430 0.96410 1.21043 1.00090 0.99843 0.93054 1.21026 0.96118 0.96498 0.99550 1.20385 0.97573 0.98220 0.94674 1.20197 0.94651 0.90297 0.84058 0.90596 1.86633 1.36437 1.61801 1.50255 1.21918 0.92443 0.98587 1.02277 1.19330 0.98693 0.92748 0.91744 0.92543 0.95678 0.96140 0.94536 0.93084 0.77446 0.89745 0.90592 0.89909 0.90015 0.85979 0.86046 0.85983 0.86180 0.77915 0.92760 0.94609 0.92105 0.97559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.73 55.43 0.71 -24.76 16 2 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.42 26.80 -169.99 -4.56 16.87 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.49 -12.88 5.51 -98.92 -0.55 -13.43 16 8 C -0.01 -0.22 5.59 -27.49 -0.15 -0.37 16 9 C -0.11 -2.37 5.50 -26.63 -0.15 -2.51 16 10 C 0.15 3.06 2.35 -67.97 -0.16 2.90 16 11 H 0.08 1.72 7.58 -51.93 -0.39 1.33 16 12 N -0.72 -11.47 4.91 -53.85 -0.26 -11.74 16 13 C 0.52 8.40 7.02 -10.99 -0.08 8.32 16 14 O -0.53 -10.85 15.17 -3.87 -0.06 -10.91 16 15 C -0.10 -1.22 2.22 -91.75 -0.20 -1.42 16 16 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 17 C -0.11 -1.04 5.25 -26.70 -0.14 -1.18 16 18 C -0.08 -0.64 5.67 -28.05 -0.16 -0.80 16 19 C -0.07 -0.63 5.74 -104.62 -0.60 -1.23 16 20 C -0.12 -0.99 9.61 -39.44 -0.38 -1.37 16 21 C -0.12 -0.93 10.05 -39.68 -0.40 -1.32 16 22 C -0.12 -0.98 10.05 -39.68 -0.40 -1.38 16 23 C -0.11 -1.03 9.21 -39.44 -0.36 -1.39 16 24 C -0.11 -1.12 5.57 -104.62 -0.58 -1.71 16 25 C 0.17 2.03 2.44 -28.06 -0.07 1.96 16 26 H 0.08 1.01 7.79 -51.92 -0.40 0.60 16 27 O -0.55 -7.11 12.62 -44.66 -0.56 -7.67 16 28 C -0.11 -2.33 5.40 -26.65 -0.14 -2.47 16 29 C 0.01 0.31 5.97 -27.50 -0.16 0.15 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.02 0.59 5.17 -51.93 -0.27 0.32 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.39 5.01 8.03 -40.82 -0.33 4.68 16 36 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 37 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.52 8.13 -51.92 -0.42 0.10 16 40 H 0.12 0.75 8.05 -52.49 -0.42 0.33 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.84 6.62 -52.49 -0.35 0.50 16 44 H 0.37 3.33 7.35 45.56 0.34 3.66 16 45 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 48 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -32.50 373.01 -10.68 -43.19 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.79 Total: 4.66 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -4.78 Total: -15.26 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.44 Total: -36.50 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.62 Total: -18.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.56 Total: 16.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.50 -10.68 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183395003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.631 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds