Wall clock time and date at job start Sat Apr 11 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47438 * 240.00220 * 3 2 1 5 5 H 1.48504 * 109.47353 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47214 * 119.99889 * 3 2 1 7 7 C 1.37880 * 119.99917 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.84975 * 180.02562 * 7 2 1 9 9 C 1.53231 * 108.53713 * 231.32769 * 8 7 2 10 10 C 1.52963 * 109.40235 * 305.37442 * 9 8 7 11 11 H 1.08996 * 109.35683 * 303.52237 * 10 9 8 12 12 N 1.46502 * 109.40999 * 183.70441 * 10 9 8 13 13 C 1.34779 * 120.00357 * 84.64689 * 12 10 9 14 14 O 1.21279 * 119.99636 * 0.02562 * 13 12 10 15 15 C 1.50694 * 120.00344 * 179.97438 * 13 12 10 16 16 H 1.09004 * 109.67849 * 300.50988 * 15 13 12 17 17 C 1.53320 * 109.70743 * 61.04439 * 15 13 12 18 18 C 1.52740 * 108.38511 * 189.58622 * 17 15 13 19 19 C 1.50633 * 110.52932 * 308.67089 * 18 17 15 20 20 C 1.38912 * 117.75080 * 197.29831 * 19 18 17 21 21 C 1.37936 * 120.54395 * 180.78438 * 20 19 18 22 22 C 1.38263 * 119.77040 * 0.21745 * 21 20 19 23 23 C 1.37942 * 119.77097 * 359.85921 * 22 21 20 24 24 C 1.37663 * 122.55695 * 18.32717 * 19 18 17 25 25 C 1.50626 * 122.55834 * 358.64594 * 24 19 18 26 26 H 1.09007 * 109.24711 * 257.84732 * 25 24 19 27 27 O 1.42898 * 109.25569 * 138.38506 * 25 24 19 28 28 C 1.52961 * 109.82033 * 63.59750 * 10 9 8 29 29 C 1.51273 * 120.84767 * 0.02562 * 7 2 1 30 30 H 0.96993 * 119.99503 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.62759 * 351.04148 * 8 7 2 32 32 H 1.08995 * 109.62496 * 111.61712 * 8 7 2 33 33 H 1.09000 * 109.48578 * 185.39179 * 9 8 7 34 34 H 1.09002 * 109.48252 * 65.35017 * 9 8 7 35 35 H 0.97006 * 119.99858 * 264.64458 * 12 10 9 36 36 H 1.09003 * 109.68062 * 309.30871 * 17 15 13 37 37 H 1.08996 * 109.68156 * 69.82805 * 17 15 13 38 38 H 1.08996 * 109.25385 * 69.15172 * 18 17 15 39 39 H 1.09010 * 109.24999 * 188.57681 * 18 17 15 40 40 H 1.08002 * 119.73195 * 1.06728 * 20 19 18 41 41 H 1.07994 * 120.11477 * 180.19700 * 21 20 19 42 42 H 1.08000 * 120.11418 * 179.84078 * 22 21 20 43 43 H 1.07998 * 119.72669 * 180.02562 * 23 22 21 44 44 H 0.96701 * 114.00076 * 59.99575 * 27 25 24 45 45 H 1.09007 * 109.47821 * 56.37786 * 28 10 9 46 46 H 1.08996 * 109.47892 * 176.40523 * 28 10 9 47 47 H 1.09000 * 109.62702 * 8.95594 * 29 7 2 48 48 H 1.09002 * 109.78160 * 248.47534 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 6 3.5171 -1.2165 0.0011 9 6 3.9911 -2.1317 -1.1327 10 6 3.3402 -3.5076 -0.9810 11 1 3.5739 -3.9112 0.0041 12 7 3.8606 -4.4088 -2.0123 13 6 5.0180 -5.0687 -1.8090 14 8 5.6285 -4.9169 -0.7721 15 6 5.5530 -5.9961 -2.8695 16 1 4.8267 -6.7843 -3.0682 17 6 5.8247 -5.2080 -4.1563 18 6 6.1331 -6.2022 -5.2741 19 6 7.2049 -7.1680 -4.8411 20 6 7.8616 -7.8908 -5.8290 21 6 8.8415 -8.8028 -5.4961 22 6 9.1702 -9.0031 -4.1682 23 6 8.5181 -8.2875 -3.1856 24 6 7.5323 -7.3674 -3.5190 25 6 6.8668 -6.6148 -2.3967 26 1 7.5320 -5.8236 -2.0506 27 8 6.6029 -7.5139 -1.3178 28 6 1.8233 -3.3833 -1.1328 29 6 1.2677 -2.5152 0.0005 30 1 -0.4849 0.8400 -0.0004 31 1 3.8983 -0.2080 -0.1588 32 1 3.8771 -1.5999 0.9558 33 1 5.0752 -2.2354 -1.0872 34 1 3.7071 -1.6990 -2.0920 35 1 3.3721 -4.5305 -2.8415 36 1 4.9451 -4.6206 -4.4197 37 1 6.6775 -4.5456 -4.0078 38 1 5.2271 -6.7540 -5.5244 39 1 6.4767 -5.6583 -6.1541 40 1 7.6062 -7.7342 -6.8666 41 1 9.3498 -9.3587 -6.2700 42 1 9.9347 -9.7177 -3.9010 43 1 8.7758 -8.4442 -2.1486 44 1 7.3940 -7.9335 -0.9529 45 1 1.5906 -2.9209 -2.0922 46 1 1.3711 -4.3740 -1.0876 47 1 0.2037 -2.3409 -0.1597 48 1 1.4162 -3.0205 0.9549 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183395003.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:32 Heat of formation + Delta-G solvation = -109.196091 kcal Electronic energy + Delta-G solvation = -28335.787827 eV Core-core repulsion = 24545.906869 eV Total energy + Delta-G solvation = -3789.880958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.73822 -40.44911 -38.59151 -37.57983 -36.38620 -35.31663 -33.43621 -32.40304 -31.56268 -31.35678 -29.59613 -28.89913 -25.34114 -24.22596 -23.77107 -23.28960 -22.86175 -21.47072 -21.25653 -20.33439 -18.76240 -18.57909 -17.82317 -17.28043 -16.76856 -16.43453 -16.37568 -16.06946 -15.77272 -15.40019 -15.18769 -14.94585 -14.60896 -14.49706 -14.28434 -14.12862 -13.99788 -13.92992 -13.55731 -13.40571 -13.27429 -12.80333 -12.75391 -12.62863 -12.56274 -12.46164 -12.19385 -12.02692 -11.99340 -11.81312 -11.60253 -11.49640 -11.09721 -10.99412 -10.74399 -10.58353 -10.48956 -9.87111 -9.70306 -9.50528 -8.18357 -6.12336 0.39040 0.46227 1.38450 1.40532 1.48016 1.71367 2.22941 2.39935 2.78347 3.09583 3.25534 3.50719 3.55707 3.81765 3.96737 4.02656 4.07491 4.12048 4.20396 4.23030 4.31918 4.36753 4.46705 4.49790 4.64672 4.70201 4.73218 4.83605 4.84361 4.89449 4.95381 5.01320 5.06670 5.10007 5.13535 5.16172 5.19705 5.24086 5.25955 5.53763 5.56043 5.58535 5.61443 5.68459 5.70402 5.75315 5.81678 6.10113 6.34074 6.66817 6.75501 6.92644 7.36807 7.45754 8.92352 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.027001 B = 0.002516 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.735516 B =11126.510668 C =11300.976951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.500 4.500 8 C -0.012 4.012 9 C -0.103 4.103 10 C 0.167 3.833 11 H 0.050 0.950 12 N -0.713 5.713 13 C 0.515 3.485 14 O -0.578 6.578 15 C -0.092 4.092 16 H 0.115 0.885 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.079 4.079 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.128 4.128 25 C 0.170 3.830 26 H 0.054 0.946 27 O -0.568 6.568 28 C -0.100 4.100 29 C 0.008 3.992 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.011 0.989 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.387 0.613 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.035 0.965 48 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.527 -17.501 -16.197 29.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.172 4.172 3 Si 0.767 3.233 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.519 4.519 8 C -0.050 4.050 9 C -0.142 4.142 10 C 0.062 3.938 11 H 0.068 0.932 12 N -0.364 5.364 13 C 0.302 3.698 14 O -0.457 6.457 15 C -0.113 4.113 16 H 0.133 0.867 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.079 4.079 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.128 4.128 25 C 0.110 3.890 26 H 0.072 0.928 27 O -0.376 6.376 28 C -0.138 4.138 29 C -0.030 4.030 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.148 0.852 44 H 0.236 0.764 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 16.180 -17.098 -15.578 28.228 hybrid contribution 0.472 0.814 0.499 1.065 sum 16.652 -16.284 -15.079 27.746 Atomic orbital electron populations 1.69939 1.07420 1.27601 1.51652 1.25532 0.95364 1.01491 0.94771 0.85847 0.78411 0.79672 0.79384 1.18747 1.21758 1.19880 1.20554 0.90695 0.92034 1.48645 1.19609 0.95167 0.95440 0.94810 1.21756 0.97370 0.95375 0.99740 1.20589 0.93843 0.88835 0.90489 0.93221 1.46100 1.23844 1.45112 1.21299 1.20941 0.80655 0.80194 0.88023 1.90673 1.59425 1.65834 1.29807 1.21311 0.97788 0.97528 0.94669 0.86675 1.21589 1.03718 0.97675 0.91387 1.20578 0.97433 0.95166 0.98209 1.19900 0.97864 0.98101 0.92078 1.21471 0.96629 0.96472 0.99909 1.21470 0.97470 0.98129 0.96890 1.21346 1.00333 0.99940 0.93147 1.21255 0.96103 0.96519 1.00609 1.20286 0.98682 0.99256 0.94599 1.20117 0.94344 0.89922 0.84585 0.92799 1.86578 1.37907 1.62092 1.50996 1.21686 0.92770 0.98818 1.00548 1.19297 0.97414 0.93355 0.92953 0.92657 0.95382 0.97085 0.94258 0.92215 0.75198 0.88313 0.91474 0.88465 0.87999 0.83747 0.83725 0.84050 0.85234 0.76363 0.92050 0.92466 0.94628 0.98773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.91 12.73 21.45 0.27 -53.64 16 2 C 0.03 1.50 5.46 84.65 0.46 1.96 16 3 Si 0.94 43.81 26.80 68.60 1.84 45.65 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.50 -26.56 5.51 -16.17 -0.09 -26.65 16 8 C -0.01 -0.58 5.59 30.11 0.17 -0.41 16 9 C -0.10 -4.27 5.50 30.66 0.17 -4.10 16 10 C 0.17 6.48 2.35 44.97 0.11 6.58 16 11 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 12 N -0.71 -21.45 4.91 -442.66 -2.18 -23.63 16 13 C 0.51 16.36 7.02 87.65 0.62 16.98 16 14 O -0.58 -23.86 15.17 5.99 0.09 -23.77 16 15 C -0.09 -2.10 2.22 -11.52 -0.03 -2.13 16 16 H 0.12 2.43 8.10 -2.38 -0.02 2.41 16 17 C -0.11 -1.75 5.25 30.62 0.16 -1.59 16 18 C -0.08 -0.96 5.67 29.74 0.17 -0.79 16 19 C -0.08 -1.30 5.74 -19.86 -0.11 -1.41 16 20 C -0.13 -1.69 9.61 22.36 0.21 -1.47 16 21 C -0.12 -1.53 10.05 22.20 0.22 -1.31 16 22 C -0.13 -1.80 10.05 22.21 0.22 -1.58 16 23 C -0.13 -2.15 9.21 22.36 0.21 -1.94 16 24 C -0.13 -2.51 5.57 -19.86 -0.11 -2.62 16 25 C 0.17 4.08 2.44 29.73 0.07 4.15 16 26 H 0.05 1.49 7.79 -2.38 -0.02 1.47 16 27 O -0.57 -14.91 12.62 -139.97 -1.77 -16.67 16 28 C -0.10 -3.99 5.40 30.65 0.17 -3.83 16 29 C 0.01 0.39 5.97 30.10 0.18 0.57 16 30 H 0.26 14.66 8.31 -92.71 -0.77 13.88 16 31 H 0.03 1.30 5.17 -2.39 -0.01 1.28 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.41 9.37 8.03 -92.70 -0.74 8.62 16 36 H 0.10 1.34 7.44 -2.39 -0.02 1.32 16 37 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 0.89 8.13 -2.38 -0.02 0.87 16 40 H 0.14 1.20 8.05 -2.91 -0.02 1.18 16 41 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.13 1.76 6.62 -2.91 -0.02 1.74 16 44 H 0.39 7.07 7.35 -74.06 -0.54 6.52 16 45 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 46 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.04 1.94 7.07 -2.39 -0.02 1.93 16 48 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -71.50 373.01 0.75 -70.75 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.31 Total: 20.89 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 2.79 Total: -19.58 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.90 Total: -77.26 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.68 Total: -40.45 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.84 Total: 45.65 kcal Total: -71.50 0.75 -70.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183395003.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.444 kcal (2) G-P(sol) polarization free energy of solvation -71.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds