Wall clock time and date at job start Sat Apr 11 2020 02:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86792 * 120.00204 * 2 1 4 4 H 1.48499 * 109.47366 * 269.99637 * 3 2 1 5 5 H 1.48500 * 109.47504 * 29.99807 * 3 2 1 6 6 H 1.48503 * 109.47333 * 150.00015 * 3 2 1 7 7 C 1.37884 * 119.99489 * 179.97438 * 2 1 3 8 8 C 1.51267 * 120.85241 * 0.02562 * 7 2 1 9 9 C 1.53229 * 108.53422 * 231.32462 * 8 7 2 10 10 C 1.52948 * 109.40386 * 305.36936 * 9 8 7 11 11 H 1.08999 * 109.42196 * 303.56588 * 10 9 8 12 12 N 1.46502 * 109.41494 * 183.70687 * 10 9 8 13 13 C 1.34777 * 120.00540 * 154.86281 * 12 10 9 14 14 O 1.21280 * 119.99456 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00233 * 180.02562 * 13 12 10 16 16 H 1.09007 * 109.70866 * 60.53628 * 15 13 12 17 17 C 1.53320 * 109.68366 * 299.99947 * 15 13 12 18 18 C 1.52734 * 108.43343 * 170.43903 * 17 15 13 19 19 C 1.50627 * 110.60013 * 51.02488 * 18 17 15 20 20 C 1.38914 * 117.75463 * 162.33728 * 19 18 17 21 21 C 1.37931 * 120.54161 * 179.70160 * 20 19 18 22 22 C 1.38258 * 119.77835 * 359.97438 * 21 20 19 23 23 C 1.37938 * 119.77075 * 0.12286 * 22 21 20 24 24 C 1.37659 * 122.56500 * 342.26698 * 19 18 17 25 25 C 1.50638 * 122.56675 * 0.75466 * 24 19 18 26 26 H 1.08992 * 109.25960 * 102.43003 * 25 24 19 27 27 O 1.42895 * 109.25331 * 221.90360 * 25 24 19 28 28 C 1.52964 * 109.76044 * 63.63709 * 10 9 8 29 29 C 1.51264 * 120.84541 * 179.97438 * 7 2 1 30 30 H 0.97006 * 120.00033 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.62459 * 111.60896 * 8 7 2 32 32 H 1.09007 * 109.78093 * 351.13216 * 8 7 2 33 33 H 1.09006 * 109.47508 * 185.39117 * 9 8 7 34 34 H 1.09000 * 109.48000 * 65.35619 * 9 8 7 35 35 H 0.97002 * 119.99277 * 334.85976 * 12 10 9 36 36 H 1.09002 * 109.67996 * 50.68994 * 17 15 13 37 37 H 1.08995 * 109.67675 * 290.18436 * 17 15 13 38 38 H 1.08997 * 109.24686 * 171.31529 * 18 17 15 39 39 H 1.09006 * 109.24672 * 290.73401 * 18 17 15 40 40 H 1.07995 * 119.72965 * 359.71149 * 20 19 18 41 41 H 1.08005 * 120.11158 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.11547 * 180.09777 * 22 21 20 43 43 H 1.07992 * 119.72981 * 180.02562 * 23 22 21 44 44 H 0.96703 * 114.00236 * 299.99277 * 27 25 24 45 45 H 1.09003 * 109.48214 * 56.34540 * 28 10 9 46 46 H 1.08997 * 109.48281 * 176.37977 * 28 10 9 47 47 H 1.09000 * 109.63018 * 248.38814 * 29 7 2 48 48 H 1.09005 * 109.62988 * 8.77324 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1942 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8227 -3.3826 1.1352 10 6 3.3396 -3.5071 0.9840 11 1 3.5738 -3.9112 -0.0008 12 7 3.8596 -4.4077 2.0160 13 6 5.0156 -5.0699 1.8124 14 8 5.6252 -4.9206 0.7746 15 6 5.5501 -5.9967 2.8737 16 1 4.8310 -6.7941 3.0615 17 6 5.7998 -5.2116 4.1668 18 6 6.1087 -6.2064 5.2838 19 6 7.1907 -7.1634 4.8569 20 6 7.8509 -7.8776 5.8488 21 6 8.8471 -8.7739 5.5220 22 6 9.1918 -8.9643 4.1967 23 6 8.5389 -8.2547 3.2104 24 6 7.5376 -7.3491 3.5377 25 6 6.8755 -6.5986 2.4119 26 1 7.5352 -5.7987 2.0760 27 8 6.6322 -7.4957 1.3265 28 6 3.9892 -2.1306 1.1362 29 6 3.5169 -1.2166 0.0000 30 1 -0.4850 0.8401 -0.0004 31 1 1.4198 -3.0193 -0.9538 32 1 0.2027 -2.3437 0.1582 33 1 1.3703 -4.3733 1.0900 34 1 1.5896 -2.9197 2.0940 35 1 3.3717 -4.5272 2.8458 36 1 4.9110 -4.6354 4.4238 37 1 6.6464 -4.5389 4.0300 38 1 6.4387 -5.6621 6.1685 39 1 5.2061 -6.7684 5.5242 40 1 7.5819 -7.7299 6.8842 41 1 9.3555 -9.3258 6.2988 42 1 9.9699 -9.6660 3.9346 43 1 8.8084 -8.4042 2.1754 44 1 7.4316 -7.9050 0.9678 45 1 3.7038 -1.6980 2.0951 46 1 5.0734 -2.2334 1.0920 47 1 3.8771 -1.6008 -0.9544 48 1 3.8982 -0.2074 0.1557 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183395009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:34 Heat of formation + Delta-G solvation = -107.127828 kcal Electronic energy + Delta-G solvation = -28338.919890 eV Core-core repulsion = 24549.128619 eV Total energy + Delta-G solvation = -3789.791272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73830 -40.44780 -38.58686 -37.57925 -36.38861 -35.31139 -33.42912 -32.40338 -31.55515 -31.35283 -29.59523 -28.89769 -25.33815 -24.22590 -23.76961 -23.28629 -22.86317 -21.47256 -21.25349 -20.33397 -18.76130 -18.58477 -17.83272 -17.28188 -16.76955 -16.42298 -16.37579 -16.06915 -15.77040 -15.40532 -15.18602 -14.94812 -14.59648 -14.51684 -14.30043 -14.12988 -14.01029 -13.94845 -13.55909 -13.41241 -13.27469 -12.79529 -12.77790 -12.64981 -12.55437 -12.46240 -12.19297 -12.02605 -11.93561 -11.81472 -11.49890 -11.39343 -11.09799 -10.98546 -10.73668 -10.58253 -10.47585 -9.85503 -9.70313 -9.50587 -8.17035 -6.11444 0.39027 0.46215 1.38865 1.41772 1.49777 1.71334 2.22939 2.41047 2.78353 3.10444 3.25725 3.50667 3.55516 3.81503 3.96731 4.02892 4.07662 4.12135 4.21770 4.23117 4.31839 4.36756 4.46572 4.50184 4.64620 4.71271 4.73174 4.83515 4.85537 4.89660 4.96842 5.01382 5.07239 5.10027 5.13409 5.17566 5.23802 5.24349 5.26132 5.55024 5.56046 5.59068 5.61439 5.68486 5.70980 5.75849 5.82005 6.10107 6.35133 6.66821 6.75623 6.93633 7.36867 7.46658 8.93492 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026920 B = 0.002517 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.850012 B =11121.801360 C =11291.899869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.498 4.498 8 C 0.007 3.993 9 C -0.100 4.100 10 C 0.167 3.833 11 H 0.049 0.951 12 N -0.713 5.713 13 C 0.514 3.486 14 O -0.578 6.578 15 C -0.092 4.092 16 H 0.115 0.885 17 C -0.106 4.106 18 C -0.077 4.077 19 C -0.079 4.079 20 C -0.127 4.127 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.128 4.128 25 C 0.170 3.830 26 H 0.054 0.946 27 O -0.568 6.568 28 C -0.102 4.102 29 C -0.022 4.022 30 H 0.264 0.736 31 H -0.007 1.007 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.411 0.589 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.386 0.614 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.009 0.991 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.616 -17.298 16.264 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.175 1.175 7 C -0.517 4.517 8 C -0.031 4.031 9 C -0.138 4.138 10 C 0.062 3.938 11 H 0.067 0.933 12 N -0.364 5.364 13 C 0.302 3.698 14 O -0.457 6.457 15 C -0.113 4.113 16 H 0.133 0.867 17 C -0.144 4.144 18 C -0.114 4.114 19 C -0.079 4.079 20 C -0.145 4.145 21 C -0.140 4.140 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.128 4.128 25 C 0.110 3.890 26 H 0.072 0.928 27 O -0.376 6.376 28 C -0.141 4.141 29 C -0.060 4.060 30 H 0.073 0.927 31 H 0.011 0.989 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.236 0.764 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.028 0.972 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.269 -16.905 15.640 28.197 hybrid contribution 0.420 0.780 -0.517 1.026 sum 16.690 -16.125 15.123 27.699 Atomic orbital electron populations 1.69957 1.07493 1.27506 1.51838 1.25568 0.95371 1.01631 0.94774 0.85843 0.79423 0.79740 0.78522 1.20472 1.21480 1.17477 1.20567 0.90766 0.91962 1.48409 1.19307 0.97371 0.93466 0.92910 1.21689 0.92796 0.98784 1.00543 1.20595 0.93842 0.88900 0.90436 0.93278 1.46104 1.23963 1.45085 1.21209 1.20943 0.80650 0.80197 0.88048 1.90674 1.59416 1.65874 1.29771 1.21309 0.97693 0.97633 0.94662 0.86682 1.21589 1.03800 0.97686 0.91302 1.20573 0.97318 0.95241 0.98259 1.19898 0.97803 0.98142 0.92089 1.21470 0.96497 0.96643 0.99872 1.21470 0.97404 0.98150 0.96933 1.21345 1.00357 0.99937 0.93131 1.21257 0.96024 0.96613 1.00593 1.20290 0.98537 0.99383 0.94624 1.20114 0.94378 0.90008 0.84455 0.92813 1.86581 1.37725 1.62601 1.50652 1.21747 0.97267 0.95319 0.99794 1.19809 0.95143 0.96358 0.94680 0.92722 0.98854 0.94687 0.92536 0.92040 0.75209 0.88302 0.91462 0.87959 0.88508 0.83741 0.83720 0.84048 0.85237 0.76378 0.92228 0.94407 0.97235 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 12.73 21.45 0.27 -53.77 16 2 C 0.03 1.38 5.46 84.66 0.46 1.84 16 3 Si 0.94 43.29 27.53 68.60 1.89 45.18 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.88 6.11 99.48 0.61 -10.27 16 7 C -0.50 -26.42 5.51 -16.17 -0.09 -26.51 16 8 C 0.01 0.37 5.96 30.10 0.18 0.55 16 9 C -0.10 -4.00 5.40 30.65 0.17 -3.84 16 10 C 0.17 6.49 2.35 44.96 0.11 6.60 16 11 H 0.05 2.22 7.57 -2.39 -0.02 2.20 16 12 N -0.71 -21.54 4.91 -442.68 -2.17 -23.71 16 13 C 0.51 16.42 7.03 87.66 0.62 17.04 16 14 O -0.58 -23.95 15.16 6.59 0.10 -23.86 16 15 C -0.09 -2.11 2.23 -11.53 -0.03 -2.14 16 16 H 0.12 2.45 8.10 -2.38 -0.02 2.43 16 17 C -0.11 -1.75 5.25 30.61 0.16 -1.59 16 18 C -0.08 -0.96 5.67 29.74 0.17 -0.79 16 19 C -0.08 -1.30 5.74 -19.86 -0.11 -1.41 16 20 C -0.13 -1.69 9.61 22.36 0.21 -1.48 16 21 C -0.12 -1.53 10.05 22.20 0.22 -1.31 16 22 C -0.13 -1.80 10.05 22.20 0.22 -1.58 16 23 C -0.13 -2.15 9.21 22.36 0.21 -1.95 16 24 C -0.13 -2.52 5.57 -19.86 -0.11 -2.63 16 25 C 0.17 4.09 2.44 29.73 0.07 4.17 16 26 H 0.05 1.49 7.80 -2.39 -0.02 1.47 16 27 O -0.57 -14.96 12.60 -139.36 -1.76 -16.72 16 28 C -0.10 -4.23 5.50 30.68 0.17 -4.06 16 29 C -0.02 -1.04 5.60 30.12 0.17 -0.87 16 30 H 0.26 14.60 8.31 -92.70 -0.77 13.82 16 31 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 32 H 0.03 1.92 7.08 -2.38 -0.02 1.90 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.41 9.41 7.96 -92.71 -0.74 8.67 16 36 H 0.10 1.34 7.37 -2.39 -0.02 1.32 16 37 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.10 0.89 8.12 -2.39 -0.02 0.88 16 39 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.14 1.20 8.05 -2.91 -0.02 1.18 16 41 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 42 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 43 H 0.13 1.76 6.62 -2.91 -0.02 1.74 16 44 H 0.39 7.10 7.36 -74.06 -0.54 6.55 16 45 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.04 1.75 4.59 -2.38 -0.01 1.74 16 Total: -1.00 -71.68 372.04 0.73 -70.95 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -0.40 Total: 21.90 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 2.80 Total: -19.96 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.90 Total: -77.49 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.66 Total: -40.57 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.89 Total: 45.18 kcal Total: -71.68 0.73 -70.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183395009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.179 kcal (2) G-P(sol) polarization free energy of solvation -71.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds