Wall clock time and date at job start Sat Apr 11 2020 02:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 117.00124 * 2 1 4 4 C 1.38777 * 120.04225 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.99414 * 179.70580 * 4 3 2 6 6 C 1.38257 * 120.08016 * 0.53119 * 5 4 3 7 7 C 1.50696 * 119.95642 * 179.76495 * 6 5 4 8 8 N 1.46901 * 109.47271 * 254.07889 * 7 6 5 9 9 C 1.46906 * 110.99894 * 197.01369 * 8 7 6 10 10 C 1.50703 * 109.46809 * 67.43144 * 9 8 7 11 11 H 1.08001 * 119.99830 * 3.15499 * 10 9 8 12 12 C 1.37877 * 119.99846 * 183.15315 * 10 9 8 13 13 N 1.31517 * 120.00145 * 354.65898 * 12 10 9 14 14 Si 1.86791 * 120.00017 * 174.65708 * 12 10 9 15 15 H 1.48504 * 109.47352 * 65.00123 * 14 12 10 16 16 H 1.48500 * 109.47386 * 185.00414 * 14 12 10 17 17 H 1.48501 * 109.47137 * 305.00008 * 14 12 10 18 18 C 1.46900 * 110.99831 * 73.06638 * 8 7 6 19 19 C 1.50701 * 109.46929 * 190.00027 * 18 8 7 20 20 C 1.38232 * 120.00025 * 90.00011 * 19 18 8 21 21 C 1.38237 * 119.99921 * 179.97438 * 20 19 18 22 22 C 1.38231 * 119.99949 * 0.08868 * 21 20 19 23 23 C 1.38233 * 120.00237 * 359.86229 * 22 21 20 24 24 C 1.38227 * 119.99876 * 269.97229 * 19 18 8 25 25 C 1.38475 * 120.08303 * 359.49306 * 6 5 4 26 26 F 1.35104 * 119.99526 * 180.25610 * 25 6 5 27 27 C 1.38383 * 120.00467 * 0.22878 * 25 6 5 28 28 H 1.09008 * 109.47002 * 60.00808 * 1 2 3 29 29 H 1.09005 * 109.47554 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47542 * 300.00998 * 1 2 3 31 31 H 1.07999 * 119.99725 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96451 * 180.29862 * 5 4 3 33 33 H 1.09007 * 109.47081 * 134.08030 * 7 6 5 34 34 H 1.09002 * 109.47208 * 14.08255 * 7 6 5 35 35 H 1.08996 * 109.46894 * 187.42844 * 9 8 7 36 36 H 1.08994 * 109.47236 * 307.42959 * 9 8 7 37 37 H 0.96995 * 120.00332 * 179.97438 * 13 12 10 38 38 H 1.08994 * 109.47580 * 69.99829 * 18 8 7 39 39 H 1.09005 * 109.46491 * 309.99725 * 18 8 7 40 40 H 1.08003 * 119.99895 * 359.69120 * 20 19 18 41 41 H 1.08001 * 119.99852 * 179.97438 * 21 20 19 42 42 H 1.08004 * 120.00080 * 179.97438 * 22 21 20 43 43 H 1.07998 * 120.00250 * 180.02562 * 23 22 21 44 44 H 1.08001 * 120.00168 * 0.02562 * 24 19 18 45 45 H 1.08004 * 120.04036 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2910 2.3753 0.0005 5 6 1.9191 3.6055 0.0067 6 6 3.2998 3.6786 0.0012 7 6 3.9821 5.0222 0.0026 8 7 4.5371 5.2910 -1.3308 9 6 5.5352 6.3676 -1.2783 10 6 6.7420 5.8967 -0.5083 11 1 6.7869 4.8814 -0.1427 12 6 7.7889 6.7619 -0.2706 13 7 7.7825 7.9641 -0.8040 14 14 9.2162 6.2268 0.8090 15 1 9.9406 5.1083 0.1535 16 1 10.1438 7.3696 1.0057 17 1 8.6989 5.7769 2.1263 18 6 3.4711 5.6078 -2.2906 19 6 4.0424 5.6351 -3.6848 20 6 4.0662 4.4807 -4.4448 21 6 4.5898 4.5060 -5.7239 22 6 5.0913 5.6852 -6.2423 23 6 5.0666 6.8399 -5.4827 24 6 4.5422 6.8148 -4.2039 25 6 4.0563 2.5188 0.0002 26 9 5.4053 2.5923 0.0000 27 6 3.4306 1.2845 -0.0002 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2124 2.3195 0.0005 32 1 1.3311 4.5114 0.0120 33 1 4.7872 5.0202 0.7375 34 1 3.2590 5.7968 0.2580 35 1 5.8330 6.6366 -2.2917 36 1 5.1051 7.2380 -0.7829 37 1 8.5187 8.5729 -0.6365 38 1 3.0461 6.5829 -2.0529 39 1 2.6920 4.8477 -2.2320 40 1 3.6799 3.5580 -4.0376 41 1 4.6088 3.6040 -6.3176 42 1 5.5008 5.7049 -7.2415 43 1 5.4580 7.7613 -5.8879 44 1 4.5236 7.7167 -3.6101 45 1 4.0201 0.3795 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204900374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:55 Heat of formation + Delta-G solvation = -24.450542 kcal Electronic energy + Delta-G solvation = -28041.350227 eV Core-core repulsion = 24131.683807 eV Total energy + Delta-G solvation = -3909.666421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.35737 -40.08478 -38.97427 -37.67283 -36.02534 -32.60525 -31.73945 -30.79972 -30.44277 -29.88909 -27.74638 -27.10000 -25.58983 -23.78046 -22.69201 -22.18266 -21.50863 -20.96892 -19.75787 -18.36499 -16.87149 -16.33624 -16.23130 -15.93623 -15.82842 -15.47735 -15.21788 -14.84031 -14.71307 -14.58427 -14.38371 -13.95499 -13.60911 -13.40546 -13.17633 -12.95022 -12.59800 -12.39875 -12.31495 -12.09113 -12.00823 -11.86200 -11.50979 -11.38282 -10.91599 -10.86840 -10.79323 -10.63670 -10.52852 -10.48234 -10.32423 -9.81171 -9.20114 -8.71446 -8.45281 -8.34094 -8.23357 -8.00286 -7.25826 -5.97430 -3.96177 1.30213 1.39605 1.83957 1.89679 3.07452 3.38505 3.41773 3.46161 3.68802 4.22898 4.49943 4.66326 4.71304 4.91232 4.94496 5.01614 5.07440 5.20831 5.24796 5.28637 5.34523 5.38462 5.42571 5.46825 5.51272 5.58997 5.78357 5.92537 5.96866 6.07125 6.11797 6.14997 6.18004 6.35375 6.47471 6.49071 6.52839 6.61150 6.87567 6.91097 6.95991 7.15103 7.29403 7.32603 7.33851 7.48877 7.88415 8.11599 8.19971 8.58097 9.12041 9.67094 11.13506 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.004724 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.202296 B = 5926.147460 C = 8167.993741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.144 3.856 4 C -0.224 4.224 5 C -0.053 4.053 6 C -0.135 4.135 7 C 0.102 3.898 8 N -0.522 5.522 9 C 0.188 3.812 10 C -0.505 4.505 11 H 0.066 0.934 12 C 0.057 3.943 13 N -0.899 5.899 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.090 3.910 19 C -0.060 4.060 20 C -0.101 4.101 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.099 4.099 25 C 0.170 3.830 26 F -0.115 7.115 27 C -0.197 4.197 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.034 0.966 35 H 0.044 0.956 36 H -0.011 1.011 37 H 0.260 0.740 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 -9.881 -2.762 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.099 3.901 4 C -0.243 4.243 5 C -0.072 4.072 6 C -0.136 4.136 7 C -0.026 4.026 8 N -0.246 5.246 9 C 0.063 3.937 10 C -0.544 4.544 11 H 0.085 0.915 12 C -0.144 4.144 13 N -0.538 5.538 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.038 4.038 19 C -0.061 4.061 20 C -0.120 4.120 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.117 4.117 25 C 0.149 3.851 26 F -0.093 7.093 27 C -0.217 4.217 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.147 -10.308 -2.917 18.552 hybrid contribution 0.552 0.655 0.814 1.181 sum -14.595 -9.653 -2.103 17.624 Atomic orbital electron populations 1.23042 0.78404 1.03759 1.01445 1.86047 1.21322 1.26905 1.88809 1.18524 0.91338 0.84149 0.96079 1.21132 0.99891 0.92101 1.11153 1.20720 0.93098 0.97187 0.96205 1.20118 0.93415 0.95700 1.04396 1.20866 0.98065 0.89968 0.93697 1.62152 1.11863 1.45988 1.04639 1.19884 0.88951 0.86555 0.98269 1.21169 1.01345 0.98066 1.33771 0.91544 1.24935 0.98188 0.95015 0.96228 1.69952 1.32548 1.07152 1.44185 0.86637 0.82184 0.77948 0.81155 1.20265 1.21484 1.20203 1.21036 0.94008 0.98905 0.89838 1.19745 0.98082 0.93194 0.95061 1.20912 0.99726 0.97446 0.93884 1.21009 1.00018 0.97634 0.96002 1.21007 1.00808 0.93243 0.99659 1.21053 1.00053 0.98162 0.94767 1.21111 0.97401 0.98133 0.95063 1.17108 0.77733 0.92495 0.97723 1.91603 1.27902 1.96956 1.92794 1.20225 0.92398 0.97657 1.11400 0.92576 0.88384 0.92629 0.85383 0.85250 0.88214 0.94794 0.93789 0.99303 0.93035 0.95099 0.91326 0.86672 0.86810 0.86868 0.86573 0.86155 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.71 10.50 -19.41 -0.20 -3.92 16 3 C 0.14 1.89 6.69 -39.22 -0.26 1.63 16 4 C -0.22 -2.63 9.04 -39.42 -0.36 -2.98 16 5 C -0.05 -0.70 8.98 -39.61 -0.36 -1.05 16 6 C -0.13 -2.19 4.71 -104.53 -0.49 -2.68 16 7 C 0.10 1.93 4.64 -4.98 -0.02 1.90 16 8 N -0.52 -11.01 4.42 -238.96 -1.06 -12.06 16 9 C 0.19 4.79 4.53 -4.97 -0.02 4.76 16 10 C -0.50 -14.17 8.21 -34.44 -0.28 -14.45 16 11 H 0.07 1.89 7.49 -52.49 -0.39 1.49 16 12 C 0.06 1.64 5.45 -17.82 -0.10 1.54 16 13 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 14 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.09 1.62 4.96 -4.98 -0.02 1.59 16 19 C -0.06 -1.10 4.91 -104.63 -0.51 -1.61 16 20 C -0.10 -1.70 9.70 -39.58 -0.38 -2.08 16 21 C -0.13 -1.97 10.05 -39.58 -0.40 -2.36 16 22 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 23 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 24 C -0.10 -1.80 7.85 -39.58 -0.31 -2.11 16 25 C 0.17 2.90 7.24 -39.44 -0.29 2.61 16 26 F -0.11 -2.30 16.76 2.25 0.04 -2.26 16 27 C -0.20 -2.91 9.97 -39.37 -0.39 -3.30 16 28 H 0.06 0.36 7.66 -51.92 -0.40 -0.04 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 32 H 0.13 1.43 7.99 -52.48 -0.42 1.01 16 33 H 0.10 2.14 6.70 -51.93 -0.35 1.79 16 34 H 0.03 0.59 7.84 -51.93 -0.41 0.18 16 35 H 0.04 1.20 5.39 -51.93 -0.28 0.92 16 36 H -0.01 -0.29 8.11 -51.93 -0.42 -0.71 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.03 0.54 8.06 -51.93 -0.42 0.13 16 39 H 0.07 1.10 6.71 -51.93 -0.35 0.76 16 40 H 0.12 1.82 8.06 -52.48 -0.42 1.39 16 41 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 43 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.12 2.25 7.84 -52.49 -0.41 1.83 16 45 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -31.57 377.15 -10.07 -41.65 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.25 Total: 1.89 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -4.01 Total: -22.17 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.32 Total: -37.92 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.92 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.57 -10.07 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204900374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.196 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds