Wall clock time and date at job start Sat Apr 11 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 110.54069 * 2 1 4 4 O 1.42103 * 110.54410 * 223.24645 * 2 1 3 5 5 N 1.65602 * 104.44832 * 111.62146 * 2 1 3 6 6 C 1.46924 * 120.63077 * 269.72576 * 5 2 1 7 7 C 1.53198 * 108.77219 * 233.88020 * 6 5 2 8 8 C 1.53045 * 109.31235 * 305.36662 * 7 6 5 9 9 C 1.52998 * 109.44502 * 181.37667 * 8 7 6 10 10 N 1.46906 * 109.46963 * 64.93903 * 9 8 7 11 11 C 1.46901 * 110.99737 * 189.99599 * 10 9 8 12 12 C 1.50699 * 109.46973 * 168.79882 * 11 10 9 13 13 H 1.07997 * 119.99960 * 355.02605 * 12 11 10 14 14 C 1.37877 * 120.00358 * 175.03174 * 12 11 10 15 15 N 1.31521 * 119.99491 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00441 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47028 * 119.99799 * 16 14 12 19 19 H 1.48508 * 109.47150 * 239.99482 * 16 14 12 20 20 C 1.46895 * 111.00114 * 66.04384 * 10 9 8 21 21 C 1.52999 * 109.47485 * 61.26016 * 20 10 9 22 22 C 1.47197 * 109.47576 * 179.38038 * 21 20 10 23 23 N 9.46137 * 97.69930 * 115.04192 * 2 1 3 24 24 C 1.53032 * 109.53803 * 61.36451 * 8 7 6 25 25 C 1.46927 * 120.62589 * 90.00072 * 5 2 1 26 26 H 1.08995 * 109.47376 * 308.37682 * 1 2 3 27 27 H 1.09001 * 109.46801 * 68.37996 * 1 2 3 28 28 H 1.08998 * 109.47117 * 188.37496 * 1 2 3 29 29 H 1.08994 * 109.58515 * 353.66493 * 6 5 2 30 30 H 1.08998 * 109.58833 * 114.09850 * 6 5 2 31 31 H 1.09002 * 109.49700 * 185.40744 * 7 6 5 32 32 H 1.09001 * 109.49666 * 65.31734 * 7 6 5 33 33 H 1.09001 * 109.45610 * 301.34107 * 8 7 6 34 34 H 1.09001 * 109.46809 * 184.93534 * 9 8 7 35 35 H 1.08994 * 109.47465 * 304.93888 * 9 8 7 36 36 H 1.08997 * 109.47639 * 288.79573 * 11 10 9 37 37 H 1.08998 * 109.47026 * 48.79978 * 11 10 9 38 38 H 0.97001 * 120.00110 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47365 * 181.25938 * 20 10 9 40 40 H 1.08997 * 109.47167 * 301.26368 * 20 10 9 41 41 H 1.09003 * 109.46982 * 299.38178 * 21 20 10 42 42 H 1.09004 * 109.46986 * 59.37648 * 21 20 10 43 43 H 1.08997 * 109.49805 * 178.68185 * 24 8 7 44 44 H 1.08999 * 109.52941 * 58.60507 * 24 8 7 45 45 H 1.08999 * 109.58754 * 245.90340 * 25 5 2 46 46 H 1.08996 * 109.59102 * 6.18991 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4198 0.3178 2.6291 7 6 3.8006 0.0575 3.2396 8 6 3.9269 -1.4265 3.5915 9 6 5.2919 -1.6835 4.2330 10 7 5.3727 -0.9703 5.5147 11 6 6.7420 -0.9965 6.0462 12 6 6.8502 -0.0365 7.2029 13 1 6.0125 0.5942 7.4614 14 6 8.0187 0.0367 7.9311 15 7 9.0387 -0.7317 7.6165 16 14 8.1532 1.2271 9.3643 17 1 6.8770 1.9723 9.5101 18 1 8.4305 0.4706 10.6117 19 1 9.2591 2.1850 9.1101 20 6 4.4202 -1.5239 6.4863 21 6 4.7565 -2.9930 6.7500 22 6 3.8111 -3.5438 7.7347 23 7 3.0816 -3.9687 8.4947 24 6 3.7948 -2.2672 2.3196 25 6 2.4140 -2.0333 1.6988 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.3608 1.3507 2.2862 30 1 1.6490 0.1344 3.3777 31 1 3.9182 0.6570 4.1423 32 1 4.5734 0.3278 2.5198 33 1 3.1387 -1.7018 4.2923 34 1 5.4176 -2.7528 4.4036 35 1 6.0787 -1.3267 3.5684 36 1 6.9804 -2.0040 6.3869 37 1 7.4412 -0.7026 5.2635 38 1 9.8607 -0.6805 8.1289 39 1 4.4852 -0.9633 7.4188 40 1 3.4088 -1.4488 6.0868 41 1 4.6808 -3.5558 5.8195 42 1 5.7719 -3.0692 7.1390 43 1 3.9081 -3.3225 2.5677 44 1 4.5676 -1.9757 1.6083 45 1 1.6427 -2.4084 2.3714 46 1 2.3485 -2.5520 0.7423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207449721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:57 Heat of formation + Delta-G solvation = -42.424735 kcal Electronic energy + Delta-G solvation = -26886.685860 eV Core-core repulsion = 23131.603933 eV Total energy + Delta-G solvation = -3755.081927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.16372 -37.46108 -37.36820 -36.13877 -35.94342 -33.26053 -32.40979 -31.09119 -30.23426 -29.78221 -27.60779 -25.63954 -24.02460 -23.35517 -22.36482 -20.41923 -19.49060 -18.87663 -17.87930 -17.45107 -16.54023 -16.30534 -16.25649 -15.43979 -14.80506 -14.71338 -14.54128 -14.32228 -14.15996 -14.09550 -13.74736 -13.50822 -13.38933 -13.33745 -13.10899 -12.54335 -12.51264 -12.29094 -12.09900 -12.05474 -11.91883 -11.86531 -11.60941 -11.35247 -11.26383 -11.16778 -11.15162 -10.85391 -10.72649 -10.56275 -10.38155 -10.30624 -10.05392 -9.78656 -9.30334 -9.06249 -8.49461 -7.36836 -6.09152 -4.10478 0.00119 2.40109 3.06390 3.08992 3.28196 3.36931 3.40486 3.64966 3.86610 4.28787 4.33037 4.39581 4.58558 4.59886 4.70045 4.89248 5.11665 5.14044 5.22550 5.27291 5.28861 5.37816 5.42699 5.44642 5.55955 5.62331 5.64807 5.78422 5.84784 5.96759 5.98527 6.09539 6.18566 6.24929 6.33853 6.38177 6.58675 6.65205 6.68259 7.17532 7.23183 7.73596 7.84365 7.99082 8.06418 8.43629 8.98051 9.54928 11.01134 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003021 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.452001 B = 9264.699160 C =10272.230487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.609 3.391 3 O -0.953 6.953 4 O -0.957 6.957 5 N -0.998 5.998 6 C 0.116 3.884 7 C -0.117 4.117 8 C -0.083 4.083 9 C 0.051 3.949 10 N -0.525 5.525 11 C 0.186 3.814 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.071 3.929 21 C -0.075 4.075 22 C 0.225 3.775 23 N -0.463 5.463 24 C -0.127 4.127 25 C 0.120 3.880 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.003 0.997 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.114 -1.905 -14.448 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.702 3.298 3 O -0.944 6.944 4 O -0.948 6.948 5 N -0.837 5.837 6 C -0.009 4.009 7 C -0.156 4.156 8 C -0.102 4.102 9 C -0.077 4.077 10 N -0.247 5.247 11 C 0.061 3.939 12 C -0.546 4.546 13 H 0.083 0.917 14 C -0.144 4.144 15 N -0.537 5.537 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.059 4.059 21 C -0.117 4.117 22 C -0.093 4.093 23 N -0.141 5.141 24 C -0.167 4.167 25 C -0.005 4.005 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.118 0.882 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.560 -1.790 -14.037 21.782 hybrid contribution 0.139 -0.271 0.995 1.041 sum -16.420 -2.061 -13.041 21.070 Atomic orbital electron populations 1.30617 1.29383 1.11362 1.11131 1.04881 0.77506 0.74108 0.73263 1.93613 1.77298 1.37807 1.85655 1.93596 1.77414 1.61707 1.62066 1.57684 1.83927 1.14642 1.27420 1.21600 0.98855 0.92959 0.87491 1.21799 0.95210 0.96763 1.01795 1.21153 0.98203 0.95307 0.95519 1.22199 0.96520 0.96147 0.92850 1.62356 1.09546 1.51246 1.01516 1.19847 0.82401 0.96377 0.95234 1.21171 0.99181 1.21290 1.12989 0.91719 1.24961 0.95819 0.95991 0.97679 1.69950 1.03891 1.39247 1.40570 0.86511 0.78169 0.80996 0.82173 1.19632 1.21218 1.21056 1.22082 0.96241 0.89107 0.98479 1.20260 0.97181 0.99838 0.94379 1.29326 0.93527 0.92612 0.93800 1.81141 1.11646 1.10347 1.11004 1.21893 0.96663 1.00232 0.97863 1.21443 0.98049 0.79277 1.01707 0.85461 0.85786 0.85586 0.89119 0.91635 0.88763 0.91677 0.91042 0.95156 0.91057 0.97906 0.95291 0.92948 0.89173 0.91730 0.88234 0.86155 0.90941 0.91200 0.91636 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.24 10.99 101.05 1.11 -2.13 16 2 S 2.61 22.84 6.10 -107.50 -0.66 22.18 16 3 O -0.95 -11.77 16.58 -57.54 -0.95 -12.73 16 4 O -0.96 -11.32 16.59 -57.54 -0.95 -12.28 16 5 N -1.00 -8.59 3.22 -113.52 -0.37 -8.95 16 6 C 0.12 1.06 6.43 -3.71 -0.02 1.03 16 7 C -0.12 -1.35 5.26 -26.61 -0.14 -1.49 16 8 C -0.08 -0.90 2.07 -90.58 -0.19 -1.09 16 9 C 0.05 0.70 4.12 -3.82 -0.02 0.69 16 10 N -0.52 -8.86 4.12 -236.08 -0.97 -9.83 16 11 C 0.19 4.10 4.54 -4.98 -0.02 4.07 16 12 C -0.51 -12.74 8.39 -34.44 -0.29 -13.03 16 13 H 0.06 1.62 7.39 -52.49 -0.39 1.24 16 14 C 0.06 1.50 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -24.88 13.29 55.43 0.74 -24.14 16 16 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.07 1.07 4.91 -3.83 -0.02 1.05 16 21 C -0.07 -1.03 5.05 -29.52 -0.15 -1.18 16 22 C 0.22 3.44 15.43 -20.76 -0.32 3.12 16 23 N -0.46 -8.08 18.54 42.15 0.78 -7.30 16 24 C -0.13 -1.19 5.36 -26.61 -0.14 -1.34 16 25 C 0.12 0.96 6.43 -3.71 -0.02 0.93 16 26 H 0.13 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.12 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.09 0.83 6.85 -51.93 -0.36 0.48 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.74 6.31 -51.93 -0.33 0.42 16 34 H 0.03 0.39 6.05 -51.93 -0.31 0.07 16 35 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 36 H 0.00 0.07 6.02 -51.93 -0.31 -0.24 16 37 H 0.03 0.71 7.91 -51.93 -0.41 0.30 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.09 1.58 6.98 -51.93 -0.36 1.21 16 40 H 0.06 0.83 6.32 -51.93 -0.33 0.50 16 41 H 0.10 1.14 6.33 -51.93 -0.33 0.81 16 42 H 0.12 1.93 6.28 -51.93 -0.33 1.60 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.68 6.86 -51.93 -0.36 0.32 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -32.88 376.13 -9.20 -42.07 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.14 Total: -2.36 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.32 Total: -7.94 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.18 Total: -50.23 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -1.91 Total: -25.01 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 22.84 SS G_CDS: -0.66 Total: 22.18 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.88 -9.20 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207449721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.350 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds