Wall clock time and date at job start Sat Apr 11 2020 02:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42100 * 110.54069 * 2 1 4 4 O 1.42103 * 110.54410 * 223.24645 * 2 1 3 5 5 N 1.65602 * 104.44832 * 111.62146 * 2 1 3 6 6 C 1.46924 * 120.63077 * 269.72576 * 5 2 1 7 7 C 1.53198 * 108.77219 * 233.88020 * 6 5 2 8 8 C 1.53045 * 109.31235 * 305.36662 * 7 6 5 9 9 C 1.52998 * 109.44502 * 181.37667 * 8 7 6 10 10 N 1.46906 * 109.46963 * 64.93903 * 9 8 7 11 11 C 1.46901 * 110.99737 * 189.99599 * 10 9 8 12 12 C 1.50699 * 109.46973 * 168.79882 * 11 10 9 13 13 H 1.07997 * 119.99960 * 355.02605 * 12 11 10 14 14 C 1.37877 * 120.00358 * 175.03174 * 12 11 10 15 15 N 1.31521 * 119.99491 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00441 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47034 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47028 * 119.99799 * 16 14 12 19 19 H 1.48508 * 109.47150 * 239.99482 * 16 14 12 20 20 C 1.46895 * 111.00114 * 66.04384 * 10 9 8 21 21 C 1.52999 * 109.47485 * 61.26016 * 20 10 9 22 22 C 1.47197 * 109.47576 * 179.38038 * 21 20 10 23 23 N 9.46137 * 97.69930 * 115.04192 * 2 1 3 24 24 C 1.53032 * 109.53803 * 61.36451 * 8 7 6 25 25 C 1.46927 * 120.62589 * 90.00072 * 5 2 1 26 26 H 1.08995 * 109.47376 * 308.37682 * 1 2 3 27 27 H 1.09001 * 109.46801 * 68.37996 * 1 2 3 28 28 H 1.08998 * 109.47117 * 188.37496 * 1 2 3 29 29 H 1.08994 * 109.58515 * 353.66493 * 6 5 2 30 30 H 1.08998 * 109.58833 * 114.09850 * 6 5 2 31 31 H 1.09002 * 109.49700 * 185.40744 * 7 6 5 32 32 H 1.09001 * 109.49666 * 65.31734 * 7 6 5 33 33 H 1.09001 * 109.45610 * 301.34107 * 8 7 6 34 34 H 1.09001 * 109.46809 * 184.93534 * 9 8 7 35 35 H 1.08994 * 109.47465 * 304.93888 * 9 8 7 36 36 H 1.08997 * 109.47639 * 288.79573 * 11 10 9 37 37 H 1.08998 * 109.47026 * 48.79978 * 11 10 9 38 38 H 0.97001 * 120.00110 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.47365 * 181.25938 * 20 10 9 40 40 H 1.08997 * 109.47167 * 301.26368 * 20 10 9 41 41 H 1.09003 * 109.46982 * 299.38178 * 21 20 10 42 42 H 1.09004 * 109.46986 * 59.37648 * 21 20 10 43 43 H 1.08997 * 109.49805 * 178.68185 * 24 8 7 44 44 H 1.08999 * 109.52941 * 58.60507 * 24 8 7 45 45 H 1.08999 * 109.58754 * 245.90340 * 25 5 2 46 46 H 1.08996 * 109.59102 * 6.18991 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4198 0.3178 2.6291 7 6 3.8006 0.0575 3.2396 8 6 3.9269 -1.4265 3.5915 9 6 5.2919 -1.6835 4.2330 10 7 5.3727 -0.9703 5.5147 11 6 6.7420 -0.9965 6.0462 12 6 6.8502 -0.0365 7.2029 13 1 6.0125 0.5942 7.4614 14 6 8.0187 0.0367 7.9311 15 7 9.0387 -0.7317 7.6165 16 14 8.1532 1.2271 9.3643 17 1 6.8770 1.9723 9.5101 18 1 8.4305 0.4706 10.6117 19 1 9.2591 2.1850 9.1101 20 6 4.4202 -1.5239 6.4863 21 6 4.7565 -2.9930 6.7500 22 6 3.8111 -3.5438 7.7347 23 7 3.0816 -3.9687 8.4947 24 6 3.7948 -2.2672 2.3196 25 6 2.4140 -2.0333 1.6988 26 1 -0.3634 0.6380 0.8056 27 1 -0.3633 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1497 29 1 2.3608 1.3507 2.2862 30 1 1.6490 0.1344 3.3777 31 1 3.9182 0.6570 4.1423 32 1 4.5734 0.3278 2.5198 33 1 3.1387 -1.7018 4.2923 34 1 5.4176 -2.7528 4.4036 35 1 6.0787 -1.3267 3.5684 36 1 6.9804 -2.0040 6.3869 37 1 7.4412 -0.7026 5.2635 38 1 9.8607 -0.6805 8.1289 39 1 4.4852 -0.9633 7.4188 40 1 3.4088 -1.4488 6.0868 41 1 4.6808 -3.5558 5.8195 42 1 5.7719 -3.0692 7.1390 43 1 3.9081 -3.3225 2.5677 44 1 4.5676 -1.9757 1.6083 45 1 1.6427 -2.4084 2.3714 46 1 2.3485 -2.5520 0.7423 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207449721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:56 Heat of formation + Delta-G solvation = -65.972101 kcal Electronic energy + Delta-G solvation = -26887.706951 eV Core-core repulsion = 23131.603933 eV Total energy + Delta-G solvation = -3756.103018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.16563 -38.56276 -38.15431 -37.25547 -36.91197 -34.81791 -33.71117 -31.84870 -31.56111 -30.22228 -29.11875 -26.90006 -25.46116 -24.12538 -23.57662 -21.48983 -20.61383 -19.61006 -18.79821 -18.57589 -18.15529 -17.22511 -16.98571 -16.81355 -16.34276 -15.76779 -15.47379 -15.33576 -15.26484 -15.06858 -14.60294 -14.53532 -14.23587 -14.16998 -13.89337 -13.82392 -13.54774 -13.43997 -13.21481 -13.10345 -13.04903 -12.90610 -12.80456 -12.71930 -12.54210 -12.46222 -12.33966 -11.99118 -11.93002 -11.88059 -11.70332 -11.37568 -11.24423 -10.96886 -10.94478 -10.51050 -9.77038 -8.79130 -8.11275 -6.17703 -0.62223 1.43110 1.46790 1.56774 1.76454 1.81769 1.84890 2.45970 3.05683 3.06300 3.23124 3.25069 3.49739 3.77768 3.97844 4.12211 4.15522 4.23064 4.28112 4.35736 4.43008 4.43820 4.55713 4.65688 4.69500 4.79903 4.88762 4.97048 4.98731 5.02496 5.06672 5.12308 5.21502 5.25016 5.29559 5.44795 5.47927 5.50823 5.58731 5.71923 5.78869 5.86138 6.20147 6.45023 6.64282 6.79304 7.00888 7.51616 8.98365 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.003021 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.452001 B = 9264.699160 C =10272.230487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.608 3.392 3 O -1.001 7.001 4 O -0.997 6.997 5 N -1.001 6.001 6 C 0.120 3.880 7 C -0.119 4.119 8 C -0.073 4.073 9 C 0.052 3.948 10 N -0.528 5.528 11 C 0.200 3.800 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.006 3.994 15 N -0.932 5.932 16 Si 0.950 3.050 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.074 3.926 21 C -0.062 4.062 22 C 0.247 3.753 23 N -0.496 5.496 24 C -0.128 4.128 25 C 0.118 3.882 26 H 0.146 0.854 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.049 0.951 36 H -0.007 1.007 37 H -0.003 1.003 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 -2.574 -14.621 24.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.707 3.293 3 O -0.991 6.991 4 O -0.987 6.987 5 N -0.839 5.839 6 C -0.005 4.005 7 C -0.158 4.158 8 C -0.091 4.091 9 C -0.076 4.076 10 N -0.250 5.250 11 C 0.074 3.926 12 C -0.548 4.548 13 H 0.081 0.919 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.777 3.223 17 H -0.188 1.188 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.056 4.056 21 C -0.104 4.104 22 C -0.070 4.070 23 N -0.175 5.175 24 C -0.167 4.167 25 C -0.006 4.006 26 H 0.165 0.835 27 H 0.158 0.842 28 H 0.168 0.832 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.011 0.989 37 H 0.015 0.985 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.151 0.849 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.115 0.885 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.827 -2.458 -14.218 24.522 hybrid contribution 1.118 -0.054 0.981 1.488 sum -18.710 -2.512 -13.237 23.056 Atomic orbital electron populations 1.30346 1.23212 1.13626 1.12962 1.04623 0.79542 0.72498 0.72656 1.93553 1.79659 1.39789 1.86108 1.93543 1.79619 1.62298 1.63258 1.57552 1.84740 1.14878 1.26769 1.21547 0.97791 0.93018 0.88124 1.21763 0.96383 0.97129 1.00547 1.21088 0.96519 0.95078 0.96451 1.22265 0.97985 0.96504 0.90876 1.62200 1.07016 1.52922 1.02894 1.19474 0.84842 0.94926 0.93360 1.21523 0.98753 1.21169 1.13378 0.91928 1.25690 0.95809 0.97545 1.00120 1.70056 1.04392 1.40975 1.41864 0.85614 0.78190 0.79121 0.79382 1.18807 1.21158 1.21159 1.22059 0.97186 0.89235 0.97096 1.20183 0.95468 0.99421 0.95335 1.29376 0.92840 0.91666 0.93139 1.81171 1.12840 1.11558 1.11938 1.21904 0.97396 1.00902 0.96522 1.21583 0.97672 0.78834 1.02551 0.83510 0.84195 0.83190 0.89611 0.88780 0.90467 0.94332 0.89103 0.93544 0.93240 0.98916 0.98481 0.93087 0.91763 0.88361 0.84913 0.88317 0.89051 0.93344 0.88545 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.52 10.99 113.37 1.25 -2.28 16 2 S 2.61 42.23 6.10 -56.49 -0.34 41.88 16 3 O -1.00 -24.83 16.58 -127.65 -2.12 -26.95 16 4 O -1.00 -23.03 16.59 -127.65 -2.12 -25.14 16 5 N -1.00 -15.13 3.22 -513.08 -1.65 -16.78 16 6 C 0.12 1.97 6.43 86.36 0.56 2.53 16 7 C -0.12 -2.70 5.26 30.68 0.16 -2.54 16 8 C -0.07 -1.45 2.07 -10.77 -0.02 -1.47 16 9 C 0.05 1.38 4.12 86.30 0.36 1.74 16 10 N -0.53 -17.74 4.12 -900.81 -3.71 -21.45 16 11 C 0.20 9.06 4.54 85.56 0.39 9.44 16 12 C -0.51 -26.02 8.39 25.60 0.21 -25.81 16 13 H 0.06 3.16 7.39 -2.91 -0.02 3.14 16 14 C 0.01 0.34 5.46 84.65 0.46 0.80 16 15 N -0.93 -52.92 13.29 21.45 0.28 -52.63 16 16 Si 0.95 42.75 29.54 68.60 2.03 44.78 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 C 0.07 2.11 4.91 86.30 0.42 2.54 16 21 C -0.06 -1.61 5.05 28.79 0.15 -1.46 16 22 C 0.25 7.06 15.43 89.44 1.38 8.44 16 23 N -0.50 -16.48 18.54 20.00 0.37 -16.11 16 24 C -0.13 -2.14 5.36 30.67 0.16 -1.98 16 25 C 0.12 1.52 6.43 86.36 0.56 2.07 16 26 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.15 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 1.51 6.85 -2.39 -0.02 1.49 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.08 2.00 7.72 -2.39 -0.02 1.98 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.50 6.31 -2.39 -0.02 1.49 16 34 H 0.05 1.10 6.05 -2.39 -0.01 1.08 16 35 H 0.05 1.54 7.92 -2.39 -0.02 1.52 16 36 H -0.01 -0.32 6.02 -2.39 -0.01 -0.33 16 37 H 0.00 -0.15 7.91 -2.39 -0.02 -0.17 16 38 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.06 2.19 6.98 -2.39 -0.02 2.18 16 40 H 0.10 2.17 6.32 -2.39 -0.02 2.16 16 41 H 0.13 2.58 6.33 -2.39 -0.02 2.56 16 42 H 0.10 3.11 6.28 -2.38 -0.01 3.10 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 46 H 0.09 1.17 6.86 -2.39 -0.02 1.15 16 Total: -1.00 -74.29 376.13 -0.25 -74.54 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 0.98 Total: 5.83 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 6.03 Total: -7.97 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -4.71 Total: -106.98 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -4.23 Total: -52.09 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 42.23 SS G_CDS: -0.34 Total: 41.88 kcal Total: -74.29 -0.25 -74.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207449721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.571 kcal (2) G-P(sol) polarization free energy of solvation -74.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds