Wall clock time and date at job start Sat Apr 11 2020 02:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99724 * 2 1 4 4 H 1.48505 * 109.46691 * 239.99697 * 3 2 1 5 5 H 1.48498 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47103 * 119.99901 * 3 2 1 7 7 C 1.38811 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99984 * 175.71447 * 7 2 1 9 9 N 1.36939 * 120.00176 * 355.72800 * 7 2 1 10 10 C 1.46922 * 120.62810 * 215.35268 * 9 7 2 11 11 C 1.53187 * 108.77632 * 233.62423 * 10 9 7 12 12 C 1.53045 * 109.31325 * 305.37063 * 11 10 9 13 13 N 1.46501 * 109.46109 * 181.38502 * 12 11 10 14 14 C 1.34778 * 120.00152 * 154.99528 * 13 12 11 15 15 O 1.21579 * 119.99575 * 4.84863 * 14 13 12 16 16 N 1.34774 * 119.99809 * 184.84283 * 14 13 12 17 17 C 1.45312 * 118.81453 * 174.30622 * 16 14 13 18 18 C 1.51724 * 111.99278 * 124.08102 * 17 16 14 19 19 C 1.52098 * 112.45910 * 41.34172 * 18 17 16 20 20 H 1.09000 * 115.19835 * 129.10451 * 19 18 17 21 21 C 1.52209 * 121.28356 * 339.44281 * 19 18 17 22 22 H 1.09006 * 115.82433 * 149.73649 * 21 19 18 23 23 C 1.45523 * 118.82043 * 354.29266 * 16 14 13 24 24 C 1.52118 * 60.71984 * 256.23573 * 21 19 18 25 25 F 1.39902 * 117.54100 * 252.59674 * 24 21 19 26 26 F 1.39899 * 117.54715 * 107.40206 * 24 21 19 27 27 C 1.53039 * 109.54009 * 61.36042 * 12 11 10 28 28 C 1.46924 * 120.63095 * 35.36838 * 9 7 2 29 29 H 0.96999 * 119.99830 * 0.02562 * 1 2 3 30 30 H 1.09010 * 109.58580 * 113.83751 * 10 9 7 31 31 H 1.08996 * 109.70468 * 353.48672 * 10 9 7 32 32 H 1.09000 * 109.50204 * 185.41348 * 11 10 9 33 33 H 1.09003 * 109.52283 * 65.33290 * 11 10 9 34 34 H 1.09002 * 109.45538 * 301.35393 * 12 11 10 35 35 H 0.97006 * 119.99903 * 334.99819 * 13 12 11 36 36 H 1.08997 * 108.97908 * 3.43747 * 17 16 14 37 37 H 1.08996 * 108.97901 * 244.72901 * 17 16 14 38 38 H 1.08997 * 108.88012 * 280.57928 * 18 17 16 39 39 H 1.08994 * 108.88320 * 162.10913 * 18 17 16 40 40 H 1.08996 * 109.11790 * 340.37082 * 23 16 14 41 41 H 1.08999 * 109.11745 * 99.44409 * 23 16 14 42 42 H 1.09003 * 109.49608 * 58.58861 * 27 12 11 43 43 H 1.09001 * 109.49442 * 178.68591 * 27 12 11 44 44 H 1.08999 * 109.59073 * 246.16221 * 28 9 7 45 45 H 1.09003 * 109.58496 * 6.59353 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0880 -1.2034 -0.0694 9 7 1.3285 -2.3864 0.0894 10 6 1.8949 -3.5224 0.8293 11 6 1.9138 -4.7485 -0.0888 12 6 0.5055 -4.9935 -0.6353 13 7 0.5131 -6.1851 -1.4876 14 6 -0.6211 -6.8899 -1.6707 15 8 -1.6684 -6.4888 -1.2015 16 7 -0.5940 -8.0392 -2.3742 17 6 -1.8027 -8.8422 -2.4506 18 6 -2.2204 -9.1051 -3.8853 19 6 -1.0370 -9.4237 -4.7860 20 1 -1.1404 -10.3281 -5.3856 21 6 0.3799 -9.0223 -4.4011 22 1 1.1739 -9.6734 -4.7668 23 6 0.6445 -8.4312 -3.0301 24 6 -0.3595 -8.2185 -5.4601 25 9 0.0515 -8.3673 -6.7891 26 9 -0.8096 -6.9420 -5.1064 27 6 0.0571 -3.7823 -1.4562 28 6 0.0170 -2.5452 -0.5536 29 1 -0.4850 0.8401 -0.0004 30 1 1.2802 -3.7311 1.7050 31 1 2.9112 -3.2859 1.1442 32 1 2.2418 -5.6211 0.4762 33 1 2.6000 -4.5727 -0.9173 34 1 -0.1847 -5.1451 0.1946 35 1 1.3344 -6.4668 -1.9201 36 1 -2.6090 -8.3188 -1.9369 37 1 -1.6270 -9.7955 -1.9522 38 1 -2.7301 -8.2225 -4.2716 39 1 -2.9134 -9.9462 -3.9024 40 1 1.2840 -7.5552 -3.1381 41 1 1.1557 -9.1714 -2.4145 42 1 0.7607 -3.6150 -2.2718 43 1 -0.9366 -3.9672 -1.8644 44 1 -0.7508 -2.6742 0.2093 45 1 -0.2052 -1.6625 -1.1532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221811118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:21:59 Heat of formation + Delta-G solvation = -63.772253 kcal Electronic energy + Delta-G solvation = -29494.038188 eV Core-core repulsion = 25184.190176 eV Total energy + Delta-G solvation = -4309.848012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.89770 -47.55618 -40.70762 -38.57618 -37.21404 -34.52056 -34.39568 -32.58514 -31.61260 -29.89530 -29.30416 -27.02595 -25.26836 -24.30229 -22.17173 -22.07218 -21.95993 -20.71510 -19.57208 -18.83551 -18.42158 -17.72074 -17.18069 -16.73158 -16.52135 -15.82316 -15.51003 -15.00090 -14.65993 -14.52192 -14.23551 -14.15418 -13.85544 -13.73003 -13.64722 -13.50274 -13.40730 -13.08348 -13.01523 -12.84299 -12.44866 -12.33798 -12.14319 -11.45762 -11.14332 -10.97232 -10.86594 -10.82760 -10.76224 -10.29626 -10.19992 -10.13481 -10.06158 -9.90256 -9.75543 -9.54172 -8.87870 -8.51722 -8.33858 -6.52242 -5.73801 -3.27950 2.49899 2.64756 2.73050 3.31933 3.40316 3.45682 3.46357 3.74181 3.78838 3.93333 4.27085 4.40699 4.50826 4.62308 4.78954 4.92817 5.00319 5.17181 5.20695 5.35341 5.37178 5.42323 5.44439 5.53213 5.67940 5.73579 5.78840 5.89362 6.16153 6.28774 6.37614 6.46784 6.54660 6.66903 6.71879 6.82533 6.95027 7.00789 7.10663 7.53259 7.81008 7.90225 8.04893 8.57494 8.73554 9.28600 9.87400 10.47213 11.31700 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.002873 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.819596 B = 9743.207239 C =10182.974552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.010 3.990 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.063 0.937 9 N -0.594 5.594 10 C 0.150 3.850 11 C -0.139 4.139 12 C 0.168 3.832 13 N -0.738 5.738 14 C 0.705 3.295 15 O -0.581 6.581 16 N -0.628 5.628 17 C 0.130 3.870 18 C -0.113 4.113 19 C -0.132 4.132 20 H 0.131 0.869 21 C -0.156 4.156 22 H 0.138 0.862 23 C 0.143 3.857 24 C 0.193 3.807 25 F -0.162 7.162 26 F -0.147 7.147 27 C -0.148 4.148 28 C 0.170 3.830 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.388 0.612 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.017 0.983 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -23.825 -8.940 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.317 5.317 10 C 0.022 3.978 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.393 5.393 14 C 0.406 3.594 15 O -0.458 6.458 16 N -0.367 5.367 17 C 0.006 3.994 18 C -0.151 4.151 19 C -0.151 4.151 20 H 0.149 0.851 21 C -0.176 4.176 22 H 0.156 0.844 23 C 0.019 3.981 24 C 0.156 3.844 25 F -0.143 7.143 26 F -0.127 7.127 27 C -0.188 4.188 28 C 0.044 3.956 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.224 0.776 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.035 0.965 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.538 -23.311 -8.584 24.847 hybrid contribution 0.964 0.773 -0.728 1.434 sum 0.426 -22.538 -9.311 24.389 Atomic orbital electron populations 1.69890 1.05348 1.25566 1.53808 1.25336 0.95533 0.98276 0.99782 0.86365 0.78917 0.83347 0.78061 1.20971 1.21585 1.20867 1.19094 0.90716 0.83207 1.45647 0.91942 1.44043 1.19755 1.09841 1.58099 1.20843 0.97682 0.87018 0.92227 1.22354 0.95294 0.99659 1.00571 1.20946 0.97732 0.82655 0.92247 1.45747 1.10059 1.30168 1.53342 1.15928 0.84646 0.79494 0.79288 1.90916 1.29711 1.69790 1.55374 1.46447 1.11743 1.23676 1.54788 1.20681 0.88009 0.95181 0.95506 1.21074 0.95529 1.03529 0.94953 1.23442 0.94268 0.97066 1.00327 0.85141 1.23420 0.97431 1.01023 0.95758 0.84400 1.20371 0.87093 1.00705 0.89976 1.20073 1.04853 0.81070 0.78363 1.93028 1.90780 1.95456 1.35007 1.93085 1.89314 1.39289 1.91023 1.22612 0.99902 0.96758 0.99541 1.20966 0.86177 0.94696 0.93796 0.93416 0.96212 0.92410 0.92775 0.92053 0.90206 0.77631 0.87702 0.91873 0.90068 0.89044 0.89335 0.89892 0.93055 0.92814 0.96481 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 10.61 55.49 0.59 -25.89 16 2 C 0.01 0.27 5.32 -17.43 -0.09 0.18 16 3 Si 0.90 21.78 29.56 -169.99 -5.02 16.76 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.26 -7.09 9.56 -15.06 -0.14 -7.23 16 8 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 9 N -0.59 -15.10 3.00 -172.33 -0.52 -15.61 16 10 C 0.15 3.11 6.51 -3.72 -0.02 3.09 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.17 3.03 2.38 -67.89 -0.16 2.87 16 13 N -0.74 -10.92 4.92 -58.63 -0.29 -11.21 16 14 C 0.71 11.04 8.17 -86.92 -0.71 10.33 16 15 O -0.58 -11.56 15.20 5.30 0.08 -11.48 16 16 N -0.63 -7.09 2.71 -182.78 -0.50 -7.58 16 17 C 0.13 1.24 6.31 -5.33 -0.03 1.21 16 18 C -0.11 -0.86 5.75 -27.84 -0.16 -1.02 16 19 C -0.13 -0.91 6.17 -91.06 -0.56 -1.48 16 20 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.16 -1.08 5.97 -92.17 -0.55 -1.63 16 22 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 23 C 0.14 1.13 5.92 -5.27 -0.03 1.10 16 24 C 0.19 1.93 5.11 -26.76 -0.14 1.79 16 25 F -0.16 -1.75 17.60 2.25 0.04 -1.71 16 26 F -0.15 -2.02 16.17 2.25 0.04 -1.98 16 27 C -0.15 -3.12 5.65 -26.61 -0.15 -3.27 16 28 C 0.17 4.27 5.27 -3.71 -0.02 4.25 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.62 7.65 -51.93 -0.40 1.22 16 35 H 0.39 4.60 6.10 -40.82 -0.25 4.35 16 36 H 0.10 1.24 6.73 -51.93 -0.35 0.89 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.78 7.57 -51.93 -0.39 0.39 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.72 5.84 -51.93 -0.30 0.42 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.18 8.09 -51.93 -0.42 0.76 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.10 2.87 5.91 -51.93 -0.31 2.56 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -33.54 358.12 -9.71 -43.25 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.60 Total: 2.35 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.92 Total: 7.70 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.71 Total: -60.29 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.69 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.54 -9.71 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221811118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.521 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds