Wall clock time and date at job start Sat Apr 11 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86803 * 120.00176 * 2 1 4 4 H 1.48508 * 109.46979 * 240.00100 * 3 2 1 5 5 H 1.48504 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47365 * 120.00018 * 3 2 1 7 7 C 1.39926 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99988 * 197.98482 * 7 2 1 9 9 C 1.41018 * 120.00071 * 17.98365 * 7 2 1 10 10 C 1.40969 * 120.10556 * 204.69440 * 9 7 2 11 11 C 1.36225 * 119.92365 * 179.76541 * 10 9 7 12 12 C 1.39934 * 120.14091 * 0.53413 * 11 10 9 13 13 C 1.47990 * 119.89545 * 179.72360 * 12 11 10 14 14 C 1.41094 * 126.37207 * 129.69902 * 13 12 11 15 15 N 1.30550 * 108.12572 * 179.97438 * 14 13 12 16 16 N 1.39950 * 108.85384 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.81678 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.46951 * 305.02701 * 17 16 15 19 19 N 1.46904 * 109.46834 * 179.97438 * 18 17 16 20 20 C 1.48556 * 111.00065 * 190.00347 * 19 18 17 21 21 C 1.54377 * 104.70215 * 200.90165 * 20 19 18 22 22 C 1.54574 * 104.91156 * 23.87555 * 21 20 19 23 23 C 1.48555 * 110.99958 * 74.58271 * 19 18 17 24 24 C 1.34721 * 108.37095 * 0.26644 * 16 15 14 25 25 C 1.40152 * 120.20869 * 359.44096 * 12 11 10 26 26 F 1.35104 * 119.96162 * 180.27463 * 25 12 11 27 27 C 1.36442 * 120.07679 * 0.29714 * 25 12 11 28 28 H 0.97010 * 119.99771 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.03728 * 0.02562 * 10 9 7 30 30 H 1.08010 * 119.92830 * 180.24947 * 11 10 9 31 31 H 1.08002 * 125.93144 * 359.97438 * 14 13 12 32 32 H 1.09003 * 109.46722 * 185.02765 * 17 16 15 33 33 H 1.08996 * 109.46852 * 65.02860 * 17 16 15 34 34 H 1.09003 * 109.47354 * 60.00452 * 18 17 16 35 35 H 1.08996 * 109.47472 * 299.99779 * 18 17 16 36 36 H 1.09002 * 110.41192 * 319.73729 * 20 19 18 37 37 H 1.09001 * 110.41823 * 82.06167 * 20 19 18 38 38 H 1.08996 * 110.33145 * 142.80824 * 21 20 19 39 39 H 1.09007 * 110.32747 * 265.01916 * 21 20 19 40 40 H 1.08989 * 110.30151 * 241.08497 * 22 21 20 41 41 H 1.09001 * 110.31514 * 118.89273 * 22 21 20 42 42 H 1.08998 * 110.41384 * 277.81896 * 23 19 18 43 43 H 1.08998 * 110.41220 * 40.14326 * 23 19 18 44 44 H 1.08001 * 126.30959 * 179.73795 * 24 16 15 45 45 H 1.07996 * 120.07161 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6963 -1.2126 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0485 -1.2346 0.2893 9 6 1.3546 -2.4034 -0.3760 10 6 1.8268 -3.6468 0.0912 11 6 1.1899 -4.7952 -0.2710 12 6 0.0747 -4.7441 -1.1147 13 6 -0.6094 -5.9955 -1.5097 14 6 -1.9944 -6.2531 -1.4298 15 7 -2.2085 -7.4633 -1.8703 16 7 -0.9859 -8.0297 -2.2486 17 6 -0.7972 -9.3764 -2.7937 18 6 -1.4038 -10.4039 -1.8361 19 7 -1.2151 -11.7541 -2.3831 20 6 -1.9940 -12.7554 -1.6100 21 6 -1.3106 -14.1052 -1.9167 22 6 0.1327 -13.7357 -2.3287 23 6 0.1955 -12.1960 -2.2354 24 6 -0.0114 -7.1281 -2.0200 25 6 -0.4000 -3.5110 -1.5821 26 9 -1.4805 -3.4670 -2.3920 27 6 0.2281 -2.3549 -1.2206 28 1 -0.4850 0.8401 0.0004 29 1 2.6901 -3.6885 0.7389 30 1 1.5492 -5.7476 0.0901 31 1 -2.7465 -5.5681 -1.0672 32 1 0.2682 -9.5745 -2.9119 33 1 -1.2898 -9.4481 -3.7634 34 1 -2.4692 -10.2058 -1.7180 35 1 -0.9112 -10.3321 -0.8665 36 1 -1.9418 -12.5366 -0.5435 37 1 -3.0316 -12.7702 -1.9438 38 1 -1.3027 -14.7363 -1.0280 39 1 -1.8214 -14.6107 -2.7364 40 1 0.3296 -14.0615 -3.3500 41 1 0.8494 -14.1861 -1.6419 42 1 0.8072 -11.7910 -3.0416 43 1 0.5911 -11.8878 -1.2676 44 1 1.0437 -7.2661 -2.2048 45 1 -0.1375 -1.4049 -1.5811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222474522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:05 Heat of formation + Delta-G solvation = 47.986877 kcal Electronic energy + Delta-G solvation = -26500.200426 eV Core-core repulsion = 22625.967878 eV Total energy + Delta-G solvation = -3874.232547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -47.55870 -40.61431 -39.18404 -37.34334 -34.55690 -33.79304 -31.70774 -30.79063 -29.27433 -29.10699 -28.74345 -27.44721 -25.00656 -23.54407 -21.71206 -21.39695 -21.17154 -20.93020 -19.94365 -19.51969 -17.63231 -16.96370 -16.33562 -16.05300 -15.74687 -15.30516 -14.83760 -14.62305 -14.53870 -14.26241 -14.20452 -14.12022 -13.63195 -13.13756 -13.04222 -12.84532 -12.61678 -12.41473 -12.27255 -11.98989 -11.87740 -11.78259 -11.64971 -11.55109 -11.32014 -11.16058 -11.04031 -10.91259 -10.86757 -10.43686 -10.15311 -9.97209 -9.66172 -9.30113 -9.03401 -8.89329 -8.18347 -7.47641 -7.11673 -6.88301 -4.49091 2.18614 2.57313 2.71685 2.90884 2.99796 3.01209 3.05561 3.50668 3.70716 3.82415 4.24206 4.28791 4.46495 4.57326 4.60816 4.85279 4.89315 5.07941 5.16586 5.25282 5.29396 5.30367 5.38269 5.44919 5.50856 5.57480 5.60860 5.63204 5.72036 5.72854 5.79432 6.08064 6.15739 6.29858 6.43204 6.44335 6.57878 6.71305 6.89798 6.99578 7.07035 7.18759 7.39233 7.54391 7.70432 7.81664 7.89078 8.15299 8.16829 8.46675 8.71124 8.78399 10.01542 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.002042 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.134882 B =13708.889449 C =14261.598098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.083 0.917 9 C 0.131 3.869 10 C -0.234 4.234 11 C -0.050 4.050 12 C -0.190 4.190 13 C -0.139 4.139 14 C 0.058 3.942 15 N -0.309 5.309 16 N -0.378 5.378 17 C 0.148 3.852 18 C 0.035 3.965 19 N -0.510 5.510 20 C 0.033 3.967 21 C -0.124 4.124 22 C -0.124 4.124 23 C 0.025 3.975 24 C 0.033 3.967 25 C 0.128 3.872 26 F -0.163 7.163 27 C -0.208 4.208 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.169 0.831 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -19.643 -3.020 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.478 4.478 8 H 0.102 0.898 9 C 0.128 3.872 10 C -0.254 4.254 11 C -0.068 4.068 12 C -0.193 4.193 13 C -0.150 4.150 14 C -0.128 4.128 15 N -0.130 5.130 16 N -0.162 5.162 17 C 0.026 3.974 18 C -0.094 4.094 19 N -0.235 5.235 20 C -0.095 4.095 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.103 4.103 24 C -0.111 4.111 25 C 0.109 3.891 26 F -0.142 7.142 27 C -0.228 4.228 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.195 0.805 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.186 0.814 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.185 -20.473 -3.887 20.872 hybrid contribution 1.023 1.502 0.998 2.073 sum -0.162 -18.971 -2.888 19.191 Atomic orbital electron populations 1.69827 1.07736 1.29913 1.32792 1.26020 0.94789 1.01712 0.92084 0.86299 0.80161 0.79804 0.80154 1.18609 1.20172 1.18807 1.19572 0.98378 0.91150 1.38737 0.89845 1.17402 0.89919 0.92350 0.87491 1.20691 1.04435 0.92689 1.07565 1.20140 0.94032 0.96815 0.95861 1.17302 1.02652 0.88403 1.10937 1.19111 0.92248 0.94970 1.08687 1.24014 0.96612 0.93275 0.98865 1.76965 1.03685 1.10945 1.21454 1.48139 1.04821 1.12105 1.51130 1.21380 1.01606 0.77274 0.97180 1.22498 1.02903 0.88086 0.95903 1.65281 1.06168 1.01234 1.50807 1.23097 0.98745 0.91374 0.96263 1.22345 0.95709 0.96623 1.01583 1.22341 0.96825 0.94926 1.02155 1.23238 0.90609 0.95577 1.00846 1.22805 0.94788 0.90653 1.02872 1.17379 0.85148 0.94183 0.92398 1.91335 1.53770 1.97494 1.71630 1.20935 1.01507 0.96088 1.04257 0.90347 0.88397 0.88718 0.80503 0.89273 0.89397 0.89191 0.93877 0.93678 0.89859 0.91290 0.90886 0.90889 0.91311 0.89902 0.93556 0.81413 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 10.96 55.55 0.61 -18.92 16 2 C 0.07 1.78 5.13 -17.34 -0.09 1.69 16 3 Si 0.91 17.81 29.60 -169.99 -5.03 12.78 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.45 -11.32 9.03 -37.90 -0.34 -11.66 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 9 C 0.13 3.36 5.57 -106.81 -0.60 2.77 16 10 C -0.23 -5.42 9.73 -39.27 -0.38 -5.81 16 11 C -0.05 -1.07 9.63 -39.67 -0.38 -1.45 16 12 C -0.19 -4.23 5.79 -104.55 -0.61 -4.83 16 13 C -0.14 -2.75 5.39 -104.95 -0.57 -3.31 16 14 C 0.06 1.11 11.43 -17.01 -0.19 0.91 16 15 N -0.31 -5.54 12.34 30.84 0.38 -5.16 16 16 N -0.38 -5.88 3.66 -60.74 -0.22 -6.10 16 17 C 0.15 1.69 6.61 -4.04 -0.03 1.67 16 18 C 0.04 0.38 5.01 -3.82 -0.02 0.36 16 19 N -0.51 -4.73 5.34 -229.98 -1.23 -5.96 16 20 C 0.03 0.27 6.45 -2.19 -0.01 0.25 16 21 C -0.12 -0.80 7.02 -25.18 -0.18 -0.98 16 22 C -0.12 -0.79 7.01 -25.18 -0.18 -0.97 16 23 C 0.03 0.20 5.92 -2.18 -0.01 0.18 16 24 C 0.03 0.55 11.39 -16.42 -0.19 0.37 16 25 C 0.13 3.13 7.20 -39.51 -0.28 2.84 16 26 F -0.16 -3.90 16.35 2.25 0.04 -3.86 16 27 C -0.21 -5.37 8.60 -39.23 -0.34 -5.71 16 28 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 29 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 30 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 31 H 0.18 3.20 8.06 -52.49 -0.42 2.78 16 32 H 0.09 0.83 7.39 -51.93 -0.38 0.44 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 36 H 0.04 0.37 8.00 -51.93 -0.42 -0.04 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.07 0.44 8.14 -51.94 -0.42 0.02 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 43 H 0.05 0.37 7.75 -51.93 -0.40 -0.03 16 44 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 45 H 0.13 3.44 6.16 -52.49 -0.32 3.12 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -28.13 376.74 -10.70 -38.83 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.53 Total: 6.39 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -4.39 Total: -23.68 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.46 Total: -36.13 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.13 -10.70 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222474522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.819 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds