Wall clock time and date at job start Sat Apr 11 2020 02:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86803 * 120.00176 * 2 1 4 4 H 1.48508 * 109.46979 * 240.00100 * 3 2 1 5 5 H 1.48504 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47365 * 120.00018 * 3 2 1 7 7 C 1.39926 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99988 * 197.98482 * 7 2 1 9 9 C 1.41018 * 120.00071 * 17.98365 * 7 2 1 10 10 C 1.40969 * 120.10556 * 204.69440 * 9 7 2 11 11 C 1.36225 * 119.92365 * 179.76541 * 10 9 7 12 12 C 1.39934 * 120.14091 * 0.53413 * 11 10 9 13 13 C 1.47990 * 119.89545 * 179.72360 * 12 11 10 14 14 C 1.41094 * 126.37207 * 129.69902 * 13 12 11 15 15 N 1.30550 * 108.12572 * 179.97438 * 14 13 12 16 16 N 1.39950 * 108.85384 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.81678 * 179.97438 * 16 15 14 18 18 C 1.52994 * 109.46951 * 305.02701 * 17 16 15 19 19 N 1.46904 * 109.46834 * 179.97438 * 18 17 16 20 20 C 1.48556 * 111.00065 * 190.00347 * 19 18 17 21 21 C 1.54377 * 104.70215 * 200.90165 * 20 19 18 22 22 C 1.54574 * 104.91156 * 23.87555 * 21 20 19 23 23 C 1.48555 * 110.99958 * 74.58271 * 19 18 17 24 24 C 1.34721 * 108.37095 * 0.26644 * 16 15 14 25 25 C 1.40152 * 120.20869 * 359.44096 * 12 11 10 26 26 F 1.35104 * 119.96162 * 180.27463 * 25 12 11 27 27 C 1.36442 * 120.07679 * 0.29714 * 25 12 11 28 28 H 0.97010 * 119.99771 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.03728 * 0.02562 * 10 9 7 30 30 H 1.08010 * 119.92830 * 180.24947 * 11 10 9 31 31 H 1.08002 * 125.93144 * 359.97438 * 14 13 12 32 32 H 1.09003 * 109.46722 * 185.02765 * 17 16 15 33 33 H 1.08996 * 109.46852 * 65.02860 * 17 16 15 34 34 H 1.09003 * 109.47354 * 60.00452 * 18 17 16 35 35 H 1.08996 * 109.47472 * 299.99779 * 18 17 16 36 36 H 1.09002 * 110.41192 * 319.73729 * 20 19 18 37 37 H 1.09001 * 110.41823 * 82.06167 * 20 19 18 38 38 H 1.08996 * 110.33145 * 142.80824 * 21 20 19 39 39 H 1.09007 * 110.32747 * 265.01916 * 21 20 19 40 40 H 1.08989 * 110.30151 * 241.08497 * 22 21 20 41 41 H 1.09001 * 110.31514 * 118.89273 * 22 21 20 42 42 H 1.08998 * 110.41384 * 277.81896 * 23 19 18 43 43 H 1.08998 * 110.41220 * 40.14326 * 23 19 18 44 44 H 1.08001 * 126.30959 * 179.73795 * 24 16 15 45 45 H 1.07996 * 120.07161 * 179.97438 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0963 1.6963 -1.2126 5 1 1.2776 2.7465 -0.0006 6 1 3.0963 1.6964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0485 -1.2346 0.2893 9 6 1.3546 -2.4034 -0.3760 10 6 1.8268 -3.6468 0.0912 11 6 1.1899 -4.7952 -0.2710 12 6 0.0747 -4.7441 -1.1147 13 6 -0.6094 -5.9955 -1.5097 14 6 -1.9944 -6.2531 -1.4298 15 7 -2.2085 -7.4633 -1.8703 16 7 -0.9859 -8.0297 -2.2486 17 6 -0.7972 -9.3764 -2.7937 18 6 -1.4038 -10.4039 -1.8361 19 7 -1.2151 -11.7541 -2.3831 20 6 -1.9940 -12.7554 -1.6100 21 6 -1.3106 -14.1052 -1.9167 22 6 0.1327 -13.7357 -2.3287 23 6 0.1955 -12.1960 -2.2354 24 6 -0.0114 -7.1281 -2.0200 25 6 -0.4000 -3.5110 -1.5821 26 9 -1.4805 -3.4670 -2.3920 27 6 0.2281 -2.3549 -1.2206 28 1 -0.4850 0.8401 0.0004 29 1 2.6901 -3.6885 0.7389 30 1 1.5492 -5.7476 0.0901 31 1 -2.7465 -5.5681 -1.0672 32 1 0.2682 -9.5745 -2.9119 33 1 -1.2898 -9.4481 -3.7634 34 1 -2.4692 -10.2058 -1.7180 35 1 -0.9112 -10.3321 -0.8665 36 1 -1.9418 -12.5366 -0.5435 37 1 -3.0316 -12.7702 -1.9438 38 1 -1.3027 -14.7363 -1.0280 39 1 -1.8214 -14.6107 -2.7364 40 1 0.3296 -14.0615 -3.3500 41 1 0.8494 -14.1861 -1.6419 42 1 0.8072 -11.7910 -3.0416 43 1 0.5911 -11.8878 -1.2676 44 1 1.0437 -7.2661 -2.2048 45 1 -0.1375 -1.4049 -1.5811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222474522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:03 Heat of formation + Delta-G solvation = 33.889992 kcal Electronic energy + Delta-G solvation = -26500.811713 eV Core-core repulsion = 22625.967878 eV Total energy + Delta-G solvation = -3874.843834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.45912 -41.96457 -39.86152 -39.13904 -35.85754 -35.24379 -32.80056 -32.32346 -30.95078 -30.21513 -29.82310 -28.66221 -26.63886 -24.52603 -23.36086 -22.83584 -22.02332 -21.80268 -21.22165 -20.96640 -19.46105 -18.17784 -17.62508 -16.95135 -16.90462 -16.62872 -16.44739 -16.27566 -16.15619 -15.69204 -15.32368 -15.18497 -14.73906 -14.66786 -14.31791 -13.97455 -13.96142 -13.66820 -13.52483 -13.43508 -13.10405 -12.88726 -12.75989 -12.67262 -12.53463 -12.33458 -12.12449 -12.07456 -11.98181 -11.82429 -11.61518 -11.38466 -11.35963 -11.04872 -10.33913 -9.80232 -9.61629 -9.32342 -8.82173 -8.64861 -6.36808 0.64821 1.01396 1.04526 1.39860 1.48898 1.53286 1.56070 1.95374 2.19458 2.68805 2.95432 3.47597 3.62739 3.69475 3.81275 3.88782 3.91540 4.06769 4.09970 4.17975 4.25448 4.33206 4.42600 4.50427 4.60913 4.61392 4.67172 4.76892 4.84124 4.86145 4.90551 4.96308 4.98370 5.07561 5.08953 5.19825 5.22083 5.26682 5.30142 5.57539 5.72552 5.79645 5.82087 5.90228 6.02026 6.03843 6.19458 6.30599 6.60741 6.77216 6.85466 6.93271 8.25831 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.032659 B = 0.002042 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.134882 B =13708.889449 C =14261.598098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.483 4.483 8 H 0.090 0.910 9 C 0.102 3.898 10 C -0.238 4.238 11 C -0.046 4.046 12 C -0.174 4.174 13 C -0.182 4.182 14 C 0.045 3.955 15 N -0.321 5.321 16 N -0.367 5.367 17 C 0.142 3.858 18 C 0.047 3.953 19 N -0.517 5.517 20 C 0.028 3.972 21 C -0.122 4.122 22 C -0.123 4.123 23 C 0.021 3.979 24 C 0.061 3.939 25 C 0.109 3.891 26 F -0.167 7.167 27 C -0.232 4.232 28 H 0.291 0.709 29 H 0.115 0.885 30 H 0.132 0.868 31 H 0.173 0.827 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.205 0.795 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -21.961 -3.277 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.511 4.511 8 H 0.108 0.892 9 C 0.099 3.901 10 C -0.258 4.258 11 C -0.064 4.064 12 C -0.177 4.177 13 C -0.193 4.193 14 C -0.140 4.140 15 N -0.143 5.143 16 N -0.149 5.149 17 C 0.022 3.978 18 C -0.083 4.083 19 N -0.241 5.241 20 C -0.100 4.100 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.106 4.106 24 C -0.086 4.086 25 C 0.090 3.910 26 F -0.146 7.146 27 C -0.252 4.252 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.149 0.851 31 H 0.191 0.809 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.221 0.779 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.565 -22.835 -4.147 23.215 hybrid contribution 0.410 1.952 1.015 2.238 sum 0.975 -20.883 -3.132 21.139 Atomic orbital electron populations 1.69901 1.09361 1.31050 1.33896 1.26918 0.95437 1.05064 0.91025 0.85190 0.78722 0.75138 0.80361 1.18324 1.19569 1.17751 1.19865 0.98894 0.92050 1.40275 0.89177 1.17749 0.90338 0.93862 0.88129 1.20954 1.04959 0.92408 1.07449 1.20483 0.93288 0.97816 0.94820 1.17558 1.02183 0.88609 1.09343 1.19073 0.92707 0.95346 1.12213 1.24017 0.96620 0.93830 0.99541 1.76943 1.05068 1.10528 1.21789 1.48494 1.03904 1.13152 1.49379 1.21736 1.03740 0.75223 0.97111 1.22281 1.01509 0.89031 0.95455 1.65301 1.07440 1.00569 1.50829 1.23168 0.98816 0.92067 0.95900 1.22352 0.95641 0.95728 1.02255 1.22359 0.96925 0.93963 1.02814 1.23337 0.89603 0.96598 1.01084 1.23228 0.96214 0.89197 0.99943 1.17635 0.85396 0.94955 0.93036 1.91311 1.53938 1.97560 1.71755 1.20854 1.02824 0.95783 1.05784 0.89871 0.86741 0.85059 0.80949 0.86156 0.88980 0.91098 0.94549 0.94087 0.90095 0.90218 0.90523 0.90388 0.90211 0.89014 0.93735 0.77858 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.64 10.96 21.82 0.24 -42.40 16 2 C 0.03 1.57 5.13 85.25 0.44 2.01 16 3 Si 0.99 36.87 29.60 68.60 2.03 38.90 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.48 -24.87 9.03 23.36 0.21 -24.66 16 8 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 9 C 0.10 5.36 5.57 -21.28 -0.12 5.24 16 10 C -0.24 -10.93 9.73 22.47 0.22 -10.71 16 11 C -0.05 -1.89 9.63 22.21 0.21 -1.68 16 12 C -0.17 -7.66 5.79 -19.82 -0.11 -7.77 16 13 C -0.18 -6.95 5.39 -20.08 -0.11 -7.06 16 14 C 0.04 1.70 11.43 85.58 0.98 2.68 16 15 N -0.32 -11.19 12.34 -56.35 -0.70 -11.88 16 16 N -0.37 -10.45 3.66 -346.08 -1.27 -11.72 16 17 C 0.14 2.82 6.61 86.38 0.57 3.40 16 18 C 0.05 0.92 5.01 86.30 0.43 1.35 16 19 N -0.52 -8.46 5.34 -881.51 -4.71 -13.17 16 20 C 0.03 0.41 6.45 86.45 0.56 0.97 16 21 C -0.12 -1.28 7.02 31.60 0.22 -1.06 16 22 C -0.12 -1.22 7.01 31.60 0.22 -1.00 16 23 C 0.02 0.27 5.92 86.45 0.51 0.78 16 24 C 0.06 1.83 11.39 84.16 0.96 2.79 16 25 C 0.11 5.47 7.20 22.32 0.16 5.63 16 26 F -0.17 -8.25 16.35 44.97 0.74 -7.52 16 27 C -0.23 -12.56 8.60 22.50 0.19 -12.36 16 28 H 0.29 13.77 8.30 -92.70 -0.77 13.00 16 29 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 30 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 31 H 0.17 6.45 8.06 -2.91 -0.02 6.43 16 32 H 0.12 1.69 7.39 -2.39 -0.02 1.68 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 35 H 0.04 0.76 7.77 -2.39 -0.02 0.74 16 36 H 0.04 0.62 8.00 -2.39 -0.02 0.60 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.09 0.99 7.85 -2.39 -0.02 0.97 16 43 H 0.04 0.59 7.75 -2.39 -0.02 0.57 16 44 H 0.20 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.11 6.04 6.16 -2.91 -0.02 6.02 16 Total: -1.00 -62.88 376.74 2.87 -60.01 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.99 Total: 29.21 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 5.54 Total: -41.44 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -6.43 Total: -79.17 kcal Atomic # 9 Polarization: -8.25 SS G_CDS: 0.74 Total: -7.52 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -62.88 2.87 -60.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222474522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.901 kcal (2) G-P(sol) polarization free energy of solvation -62.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds