Wall clock time and date at job start Sat Apr 11 2020 02:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86803 * 120.00098 * 2 1 4 4 H 1.48495 * 109.46694 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47026 * 299.99986 * 3 2 1 6 6 H 1.48501 * 109.46869 * 60.00104 * 3 2 1 7 7 C 1.39925 * 119.99520 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99391 * 197.80637 * 7 2 1 9 9 C 1.41316 * 120.00539 * 17.80772 * 7 2 1 10 10 C 1.40794 * 120.20717 * 24.63433 * 9 7 2 11 11 C 1.37603 * 120.00624 * 179.97438 * 10 9 7 12 12 C 1.38541 * 120.44343 * 359.76760 * 11 10 9 13 13 C 1.39495 * 120.42109 * 0.51180 * 12 11 10 14 14 C 1.48501 * 120.00623 * 179.74179 * 13 12 11 15 15 C 1.40834 * 126.21965 * 129.73279 * 14 13 12 16 16 N 1.30673 * 108.10795 * 179.71673 * 15 14 13 17 17 N 1.40018 * 108.52179 * 0.43706 * 16 15 14 18 18 C 1.46494 * 125.90330 * 179.81666 * 17 16 15 19 19 C 1.52999 * 109.47258 * 304.69101 * 18 17 16 20 20 N 1.46900 * 109.47138 * 179.97438 * 19 18 17 21 21 C 1.48564 * 110.99825 * 189.99883 * 20 19 18 22 22 C 1.54381 * 104.70021 * 200.90301 * 21 20 19 23 23 C 1.54567 * 104.91013 * 23.88240 * 22 21 20 24 24 C 1.48564 * 110.99826 * 74.58557 * 20 19 18 25 25 C 1.34873 * 108.19672 * 359.55163 * 17 16 15 26 26 C 1.39047 * 119.98214 * 359.46937 * 13 12 11 27 27 F 1.35091 * 120.21788 * 180.29635 * 26 13 12 28 28 H 0.96996 * 119.99664 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99942 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.77453 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.78908 * 180.25841 * 12 11 10 32 32 H 1.07998 * 125.94265 * 0.02562 * 15 14 13 33 33 H 1.09001 * 109.47374 * 184.69017 * 18 17 16 34 34 H 1.09002 * 109.47142 * 64.69446 * 18 17 16 35 35 H 1.09002 * 109.46707 * 60.00147 * 19 18 17 36 36 H 1.09002 * 109.47325 * 300.00233 * 19 18 17 37 37 H 1.08998 * 110.41572 * 319.74378 * 21 20 19 38 38 H 1.09005 * 110.40719 * 82.06630 * 21 20 19 39 39 H 1.08991 * 110.32523 * 142.80941 * 22 21 20 40 40 H 1.09003 * 110.32378 * 265.02061 * 22 21 20 41 41 H 1.09000 * 110.30046 * 241.08254 * 23 22 21 42 42 H 1.08993 * 110.31942 * 118.89526 * 23 22 21 43 43 H 1.08995 * 110.40698 * 277.81728 * 24 20 19 44 44 H 1.08994 * 110.41282 * 40.14049 * 24 20 19 45 45 H 1.08000 * 126.19465 * 180.24324 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7025 1.3463 0.0006 5 1 1.8838 2.3964 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2341 0.2866 9 6 1.3523 -2.4065 -0.3732 10 6 0.2230 -2.3619 -1.2128 11 6 -0.4121 -3.5278 -1.5746 12 6 0.0548 -4.7511 -1.1218 13 6 1.1686 -4.8160 -0.2845 14 6 1.6577 -6.1318 0.2001 15 6 2.9846 -6.5999 0.1398 16 7 3.0183 -7.7942 0.6692 17 7 1.7232 -8.1372 1.0760 18 6 1.3280 -9.3954 1.7136 19 6 1.7583 -10.5705 0.8333 20 7 1.3625 -11.8323 1.4731 21 6 1.9683 -12.9957 0.7756 22 6 1.0824 -14.1958 1.1735 23 6 -0.2816 -13.5750 1.5521 24 6 -0.1012 -12.0550 1.3506 25 6 0.9034 -7.1066 0.7846 26 6 1.8241 -3.6489 0.0917 27 9 2.9068 -3.7067 0.8976 28 1 -0.4849 0.8400 -0.0004 29 1 -0.1449 -1.4125 -1.5731 30 1 -1.2778 -3.4892 -2.2192 31 1 -0.4493 -5.6599 -1.4157 32 1 3.8283 -6.0631 -0.2680 33 1 0.2456 -9.4140 1.8408 34 1 1.8097 -9.4759 2.6881 35 1 2.8407 -10.5519 0.7062 36 1 1.2766 -10.4900 -0.1412 37 1 1.9441 -12.8467 -0.3039 38 1 2.9928 -13.1507 1.1143 39 1 0.9690 -14.8783 0.3313 40 1 1.5126 -14.7168 2.0288 41 1 -0.5205 -13.7932 2.5929 42 1 -1.0650 -13.9535 0.8956 43 1 -0.6357 -11.5030 2.1236 44 1 -0.4497 -11.7568 0.3618 45 1 -0.1581 -7.0614 0.9786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222476385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:13 Heat of formation + Delta-G solvation = 50.194946 kcal Electronic energy + Delta-G solvation = -26638.385633 eV Core-core repulsion = 22764.248834 eV Total energy + Delta-G solvation = -3874.136798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.14514 -40.78161 -39.20785 -37.19967 -34.59251 -33.77860 -31.75516 -30.86345 -29.53708 -29.28198 -28.52765 -26.75229 -25.30100 -23.63195 -21.89433 -21.39378 -21.20954 -20.79574 -19.99841 -19.63319 -17.46026 -16.73247 -16.34716 -16.02501 -15.84337 -15.33924 -15.14912 -14.54674 -14.48339 -14.23696 -14.03158 -13.95001 -13.64393 -13.16696 -12.92348 -12.85310 -12.72888 -12.44326 -12.25648 -11.87516 -11.80475 -11.76910 -11.63575 -11.55983 -11.31461 -11.13063 -11.07368 -10.89393 -10.77985 -10.51947 -10.32160 -9.79334 -9.55541 -9.23865 -9.09987 -8.91765 -8.33235 -7.44272 -7.05845 -6.80522 -4.41086 2.12659 2.61204 2.64344 2.69085 3.06095 3.10901 3.13565 3.47410 3.68467 3.90505 4.22664 4.27321 4.52301 4.55999 4.58428 4.82798 4.88027 5.05162 5.14968 5.19266 5.24445 5.26659 5.36595 5.43584 5.48716 5.54514 5.59615 5.60849 5.70889 5.77736 5.88938 5.93398 6.08218 6.29841 6.39115 6.42561 6.55908 6.59080 6.84937 7.02182 7.10825 7.19101 7.32571 7.53633 7.63795 7.93275 7.99044 8.04791 8.10952 8.53164 8.73561 8.83841 10.10837 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.032924 B = 0.002114 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.247399 B =13240.861032 C =13718.157780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.086 3.914 10 C -0.147 4.147 11 C -0.112 4.112 12 C -0.207 4.207 13 C -0.023 4.023 14 C -0.165 4.165 15 C 0.068 3.932 16 N -0.305 5.305 17 N -0.380 5.380 18 C 0.147 3.853 19 C 0.035 3.965 20 N -0.510 5.510 21 C 0.033 3.967 22 C -0.124 4.124 23 C -0.124 4.124 24 C 0.025 3.975 25 C 0.054 3.946 26 C -0.012 4.012 27 F -0.159 7.159 28 H 0.282 0.718 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.020 -20.116 0.927 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.083 3.917 10 C -0.166 4.166 11 C -0.130 4.130 12 C -0.226 4.226 13 C -0.025 4.025 14 C -0.176 4.176 15 C -0.118 4.118 16 N -0.126 5.126 17 N -0.164 5.164 18 C 0.025 3.975 19 C -0.094 4.094 20 N -0.235 5.235 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.163 4.163 24 C -0.103 4.103 25 C -0.091 4.091 26 C -0.033 4.033 27 F -0.138 7.138 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.198 0.802 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.312 -21.048 1.913 21.175 hybrid contribution -0.411 1.540 -0.888 1.824 sum -1.724 -19.508 1.024 19.611 Atomic orbital electron populations 1.69831 1.07605 1.29364 1.34770 1.25903 0.94750 1.01444 0.92101 0.86211 0.81133 0.80583 0.78594 1.18230 1.19591 1.19907 1.19532 0.98433 0.90914 1.39400 0.89903 1.17561 0.92646 0.90709 0.90830 1.21205 0.98234 0.97322 0.99870 1.20637 0.99076 0.92922 1.00382 1.20196 0.99898 0.96419 1.06137 1.17594 0.96987 0.88186 0.99725 1.18991 0.92911 0.96401 1.09328 1.23976 0.97616 0.92187 0.98051 1.77104 0.98776 1.16610 1.20101 1.48281 1.05850 1.13559 1.48678 1.21407 1.00413 0.79486 0.96211 1.22491 1.02684 0.88727 0.95472 1.65284 1.06046 1.01362 1.50778 1.23100 0.99428 0.90131 0.96807 1.22344 0.95252 0.97114 1.01553 1.22339 0.97299 0.94399 1.02213 1.23242 0.89463 0.96811 1.00768 1.22463 0.97242 0.88442 1.00907 1.17815 0.90905 0.93705 1.00859 1.91265 1.53278 1.97205 1.72008 0.90741 0.85759 0.88771 0.88764 0.80205 0.89152 0.89265 0.89170 0.93853 0.93677 0.89846 0.91286 0.90871 0.90873 0.91305 0.89879 0.93550 0.81164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.97 10.96 55.55 0.61 -19.36 16 2 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.59 29.60 -169.99 -5.03 13.55 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.45 -12.13 8.78 -37.78 -0.33 -12.46 16 8 H 0.08 2.20 7.73 -52.49 -0.41 1.80 16 9 C 0.09 2.28 5.57 -106.80 -0.60 1.68 16 10 C -0.15 -3.68 8.69 -38.85 -0.34 -4.02 16 11 C -0.11 -2.48 10.01 -39.70 -0.40 -2.88 16 12 C -0.21 -4.42 9.70 -39.00 -0.38 -4.80 16 13 C -0.02 -0.51 5.75 -104.90 -0.60 -1.12 16 14 C -0.17 -3.25 5.35 -105.34 -0.56 -3.82 16 15 C 0.07 1.28 11.42 -17.06 -0.19 1.09 16 16 N -0.31 -5.38 12.38 30.80 0.38 -5.00 16 17 N -0.38 -5.83 3.67 -61.10 -0.22 -6.06 16 18 C 0.15 1.66 6.61 -4.05 -0.03 1.63 16 19 C 0.04 0.37 5.01 -3.82 -0.02 0.35 16 20 N -0.51 -4.65 5.34 -229.96 -1.23 -5.87 16 21 C 0.03 0.26 6.45 -2.18 -0.01 0.25 16 22 C -0.12 -0.78 7.02 -25.18 -0.18 -0.96 16 23 C -0.12 -0.78 7.01 -25.18 -0.18 -0.96 16 24 C 0.03 0.19 5.92 -2.18 -0.01 0.18 16 25 C 0.05 0.90 11.31 -16.87 -0.19 0.70 16 26 C -0.01 -0.31 7.25 -38.32 -0.28 -0.59 16 27 F -0.16 -4.03 15.81 2.25 0.04 -3.99 16 28 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 29 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.18 3.18 8.06 -52.49 -0.42 2.75 16 33 H 0.09 0.83 7.39 -51.93 -0.38 0.44 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 37 H 0.04 0.36 8.00 -51.93 -0.42 -0.05 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.59 7.85 -51.93 -0.41 0.18 16 44 H 0.05 0.36 7.75 -51.93 -0.40 -0.04 16 45 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -29.07 376.17 -10.70 -39.77 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.52 Total: 5.20 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -4.39 Total: -23.91 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.46 Total: -36.29 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.07 -10.70 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222476385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.966 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds