Wall clock time and date at job start Sat Apr 11 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86804 * 119.99718 * 2 1 4 4 H 1.48498 * 109.47204 * 269.99451 * 3 2 1 5 5 H 1.48491 * 109.47339 * 29.99738 * 3 2 1 6 6 H 1.48498 * 109.46753 * 150.00122 * 3 2 1 7 7 C 1.39909 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99988 * 162.35143 * 7 2 1 9 9 C 1.41312 * 119.99757 * 342.07681 * 7 2 1 10 10 C 1.40548 * 120.20893 * 335.36981 * 9 7 2 11 11 C 1.38608 * 119.66012 * 179.75203 * 10 9 7 12 12 C 1.48497 * 119.96278 * 180.25306 * 11 10 9 13 13 C 1.40844 * 126.21720 * 0.31798 * 12 11 10 14 14 N 1.30672 * 108.09960 * 179.97438 * 13 12 11 15 15 N 1.40012 * 108.52583 * 0.02562 * 14 13 12 16 16 C 1.46501 * 125.89436 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47416 * 304.97452 * 16 15 14 18 18 N 1.46898 * 109.47016 * 179.97438 * 17 16 15 19 19 C 1.48535 * 110.99920 * 52.60841 * 18 17 16 20 20 C 1.54941 * 103.22572 * 159.71781 * 19 18 17 21 21 C 1.54594 * 102.92365 * 322.58396 * 20 19 18 22 22 C 1.47910 * 110.99842 * 170.00344 * 18 17 16 23 23 C 1.34845 * 108.20454 * 359.77070 * 15 14 13 24 24 C 1.39791 * 120.08410 * 0.54677 * 11 10 9 25 25 C 1.38264 * 120.41599 * 359.70326 * 24 11 10 26 26 C 1.38053 * 120.34438 * 0.02562 * 25 24 11 27 27 F 1.35097 * 120.04612 * 180.02562 * 26 25 24 28 28 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.16830 * 0.02562 * 10 9 7 30 30 H 1.08002 * 125.94756 * 0.02562 * 13 12 11 31 31 H 1.09000 * 109.46930 * 64.98266 * 16 15 14 32 32 H 1.09001 * 109.46649 * 184.97689 * 16 15 14 33 33 H 1.08992 * 109.47446 * 300.00461 * 17 16 15 34 34 H 1.09003 * 109.46543 * 60.00667 * 17 16 15 35 35 H 1.08997 * 110.66915 * 278.15357 * 19 18 17 36 36 H 1.08997 * 110.66375 * 41.28309 * 19 18 17 37 37 H 1.09000 * 110.72093 * 204.23032 * 20 19 18 38 38 H 1.08999 * 110.87454 * 81.01832 * 20 19 18 39 39 H 1.08996 * 110.31287 * 263.04638 * 21 20 19 40 40 H 1.09000 * 110.31148 * 140.87067 * 21 20 19 41 41 H 1.08995 * 109.91408 * 333.50975 * 22 18 17 42 42 H 1.08995 * 109.91512 * 94.60584 * 22 18 17 43 43 H 1.07997 * 126.19350 * 180.22829 * 23 15 14 44 44 H 1.07994 * 119.79256 * 179.72714 * 24 11 10 45 45 H 1.08006 * 119.82321 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4400 2.6527 0.6999 6 1 3.5401 1.4402 0.7000 7 6 2.0081 -1.2116 0.0005 8 1 3.0500 -1.2338 -0.2830 9 6 1.3530 -2.4056 0.3777 10 6 0.2271 -2.3594 1.2177 11 6 -0.4099 -3.5370 1.5763 12 6 -1.6034 -3.4956 2.4589 13 6 -2.1998 -2.3393 2.9984 14 7 -3.2242 -2.7098 3.7200 15 7 -3.3214 -4.1057 3.6708 16 6 -4.3351 -4.9204 4.3453 17 6 -4.3328 -4.6014 5.8417 18 7 -5.3497 -5.4180 6.5179 19 6 -5.1781 -6.8574 6.1941 20 6 -5.9311 -7.5717 7.3445 21 6 -5.6067 -6.6884 8.5710 22 6 -5.2190 -5.3169 7.9878 23 6 -2.3244 -4.5702 2.8907 24 6 0.0734 -4.7642 1.1132 25 6 1.1839 -4.8139 0.2910 26 6 1.8285 -3.6514 -0.0816 27 9 2.9127 -3.7069 -0.8856 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1425 -1.4108 1.5782 30 1 -1.8685 -1.3233 2.8421 31 1 -5.3170 -4.6978 3.9278 32 1 -4.1088 -5.9765 4.1987 33 1 -3.3510 -4.8240 6.2592 34 1 -4.5591 -3.5453 5.9883 35 1 -5.6334 -7.0923 5.2321 36 1 -4.1226 -7.1294 6.1980 37 1 -5.5496 -8.5829 7.4858 38 1 -7.0043 -7.5888 7.1544 39 1 -4.7726 -7.1106 9.1314 40 1 -6.4838 -6.5929 9.2111 41 1 -4.1892 -5.0781 8.2534 42 1 -5.8888 -4.5456 8.3679 43 1 -2.1306 -5.6056 2.6525 44 1 -0.4239 -5.6792 1.3991 45 1 1.5495 -5.7674 -0.0609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222483575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:15 Heat of formation + Delta-G solvation = 33.571241 kcal Electronic energy + Delta-G solvation = -26643.752972 eV Core-core repulsion = 22768.895316 eV Total energy + Delta-G solvation = -3874.857656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.13287 -42.13905 -39.95408 -39.01057 -35.77115 -35.33357 -32.81753 -32.34955 -31.49728 -30.06124 -29.61846 -27.85304 -27.15763 -24.64983 -23.42672 -23.16547 -21.98808 -21.78084 -21.12851 -20.77544 -19.12835 -18.15076 -17.77922 -17.05520 -16.94723 -16.88619 -16.35580 -16.13905 -15.90310 -15.63371 -15.30669 -15.19770 -14.79187 -14.41652 -14.28484 -14.06365 -13.91993 -13.67733 -13.49457 -13.35922 -13.24082 -12.94185 -12.77236 -12.71341 -12.42469 -12.38753 -12.19049 -12.13210 -12.00391 -11.88151 -11.47525 -11.43627 -11.26499 -11.09767 -10.37074 -10.12008 -9.52200 -9.44845 -8.72641 -8.34053 -6.37684 0.48999 0.97176 1.05592 1.37615 1.45550 1.52629 1.52879 2.04437 2.20503 2.79271 2.95857 3.42109 3.66539 3.71041 3.74022 3.92051 3.95829 4.05169 4.12005 4.14671 4.22149 4.30931 4.33574 4.48972 4.57960 4.61043 4.67160 4.74769 4.78297 4.83112 4.89536 4.93002 4.95616 5.06555 5.07795 5.18866 5.23905 5.29705 5.41369 5.51100 5.72806 5.79540 5.82932 5.89145 6.06203 6.12227 6.15754 6.24961 6.60747 6.74609 6.82130 6.93993 8.28910 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.002386 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.494689 B =11730.823078 C =12854.197155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.067 0.933 9 C 0.058 3.942 10 C -0.157 4.157 11 C 0.001 3.999 12 C -0.201 4.201 13 C 0.053 3.947 14 N -0.319 5.319 15 N -0.370 5.370 16 C 0.137 3.863 17 C 0.048 3.952 18 N -0.523 5.523 19 C 0.020 3.980 20 C -0.120 4.120 21 C -0.129 4.129 22 C 0.031 3.969 23 C 0.076 3.924 24 C -0.203 4.203 25 C -0.117 4.117 26 C -0.073 4.073 27 F -0.174 7.174 28 H 0.291 0.709 29 H 0.116 0.884 30 H 0.175 0.825 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.211 0.789 44 H 0.141 0.859 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -12.698 14.419 23.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.085 0.915 9 C 0.055 3.945 10 C -0.177 4.177 11 C 0.000 4.000 12 C -0.212 4.212 13 C -0.133 4.133 14 N -0.140 5.140 15 N -0.152 5.152 16 C 0.017 3.983 17 C -0.081 4.081 18 N -0.248 5.248 19 C -0.108 4.108 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.097 4.097 23 C -0.071 4.071 24 C -0.222 4.222 25 C -0.136 4.136 26 C -0.093 4.093 27 F -0.154 7.154 28 H 0.102 0.898 29 H 0.134 0.866 30 H 0.192 0.808 31 H 0.113 0.887 32 H 0.143 0.857 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.228 0.772 44 H 0.158 0.842 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.612 -12.042 15.043 24.183 hybrid contribution 2.363 0.726 -0.788 2.594 sum -12.249 -11.316 14.254 21.939 Atomic orbital electron populations 1.69853 1.08615 1.30818 1.34492 1.26644 0.95565 1.04106 0.91179 0.85258 0.79196 0.76104 0.79547 1.18805 1.18320 1.18626 1.19616 0.98121 0.92633 1.42139 0.91453 1.17901 0.93519 0.91634 0.91481 1.21124 0.98471 0.97342 1.00801 1.18105 0.92888 0.93377 0.95645 1.19097 1.01154 0.92889 1.08043 1.24007 0.93336 1.00170 0.95760 1.77111 1.21325 0.90971 1.24571 1.48619 1.23970 1.04360 1.38217 1.21919 0.90423 0.94398 0.91609 1.22330 0.93589 0.99206 0.92995 1.64830 1.45313 1.07756 1.06865 1.23482 0.99596 0.86939 1.00737 1.22484 1.01163 0.98858 0.93338 1.22409 1.02318 0.93738 0.98259 1.22940 1.00179 0.99377 0.87175 1.22905 0.89187 1.00626 0.94344 1.20564 0.99595 0.96664 1.05356 1.20750 0.97118 0.95775 0.99958 1.18281 0.91952 0.95846 1.03187 1.91218 1.54051 1.97375 1.72709 0.89771 0.86620 0.80828 0.88682 0.85675 0.94806 0.91157 0.88578 0.93175 0.89564 0.90467 0.90844 0.90092 0.94219 0.90354 0.77200 0.84169 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.07 10.97 21.82 0.24 -41.83 16 2 C 0.04 2.11 5.13 85.24 0.44 2.55 16 3 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.50 -27.90 8.78 23.43 0.21 -27.69 16 8 H 0.07 3.81 7.73 -2.91 -0.02 3.79 16 9 C 0.06 3.20 5.57 -21.27 -0.12 3.08 16 10 C -0.16 -8.12 8.21 22.92 0.19 -7.93 16 11 C 0.00 0.06 5.87 -20.08 -0.12 -0.05 16 12 C -0.20 -7.54 6.04 -20.33 -0.12 -7.66 16 13 C 0.05 2.02 11.41 85.50 0.98 3.00 16 14 N -0.32 -11.02 12.38 -56.46 -0.70 -11.72 16 15 N -0.37 -10.15 3.67 -347.22 -1.27 -11.43 16 16 C 0.14 2.55 6.16 86.38 0.53 3.08 16 17 C 0.05 0.94 5.21 86.30 0.45 1.39 16 18 N -0.52 -8.48 5.40 -883.01 -4.76 -13.25 16 19 C 0.02 0.23 5.10 86.65 0.44 0.67 16 20 C -0.12 -1.13 7.06 31.80 0.22 -0.90 16 21 C -0.13 -1.34 6.93 31.47 0.22 -1.12 16 22 C 0.03 0.46 6.70 86.45 0.58 1.03 16 23 C 0.08 2.16 10.83 83.81 0.91 3.07 16 24 C -0.20 -8.04 9.57 22.65 0.22 -7.82 16 25 C -0.12 -5.10 9.99 22.23 0.22 -4.88 16 26 C -0.07 -3.79 7.31 22.91 0.17 -3.62 16 27 F -0.17 -9.18 16.70 44.97 0.75 -8.43 16 28 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 29 H 0.12 6.13 5.14 -2.91 -0.01 6.11 16 30 H 0.17 6.76 7.33 -2.91 -0.02 6.74 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.13 1.53 6.72 -2.39 -0.02 1.51 16 33 H 0.03 0.71 7.81 -2.39 -0.02 0.69 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 0.91 7.66 -2.39 -0.02 0.89 16 36 H 0.05 0.57 8.00 -2.39 -0.02 0.55 16 37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.04 0.63 7.57 -2.39 -0.02 0.61 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.21 4.12 7.26 -2.91 -0.02 4.10 16 44 H 0.14 4.23 6.99 -2.91 -0.02 4.21 16 45 H 0.13 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -66.29 371.45 2.69 -63.60 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.00 Total: 25.81 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 5.41 Total: -43.82 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -6.50 Total: -78.22 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.75 Total: -8.43 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -66.29 2.69 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222483575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.176 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds