Wall clock time and date at job start Sat Apr 11 2020 02:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86807 * 119.99867 * 2 1 4 4 H 1.48500 * 109.47101 * 239.99513 * 3 2 1 5 5 H 1.48493 * 109.47227 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46985 * 120.00375 * 3 2 1 7 7 C 1.39993 * 120.00314 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00485 * 164.28463 * 7 2 1 9 9 C 1.40883 * 119.99902 * 344.29104 * 7 2 1 10 10 C 1.40731 * 120.31329 * 333.28107 * 9 7 2 11 11 C 1.37592 * 119.84689 * 180.02562 * 10 9 7 12 12 F 1.35103 * 119.74755 * 179.97438 * 11 10 9 13 13 C 1.39208 * 120.50285 * 0.02620 * 11 10 9 14 14 C 1.37984 * 120.65546 * 359.67162 * 13 11 10 15 15 C 1.39161 * 120.12734 * 0.60537 * 14 13 11 16 16 C 1.47896 * 120.24891 * 179.70099 * 15 14 13 17 17 C 1.41125 * 126.37388 * 129.69913 * 16 15 14 18 18 N 1.30543 * 108.12105 * 179.97438 * 17 16 15 19 19 N 1.39955 * 108.86277 * 0.02562 * 18 17 16 20 20 C 1.46500 * 125.80615 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47330 * 305.01901 * 20 19 18 22 22 N 1.46902 * 109.46986 * 180.02562 * 21 20 19 23 23 C 1.48566 * 110.99773 * 189.99990 * 22 21 20 24 24 C 1.54376 * 104.69614 * 200.90421 * 23 22 21 25 25 C 1.54564 * 104.91719 * 23.88244 * 24 23 22 26 26 C 1.48563 * 110.99687 * 74.58657 * 22 21 20 27 27 C 1.34714 * 108.38093 * 0.21915 * 19 18 17 28 28 H 0.97001 * 119.99827 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.07696 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.67157 * 179.97438 * 13 11 10 31 31 H 1.07995 * 119.93630 * 180.30540 * 14 13 11 32 32 H 1.08002 * 125.93769 * 359.97438 * 17 16 15 33 33 H 1.09005 * 109.46845 * 185.02114 * 20 19 18 34 34 H 1.09004 * 109.47446 * 65.02138 * 20 19 18 35 35 H 1.09005 * 109.46983 * 60.00297 * 21 20 19 36 36 H 1.08997 * 109.46848 * 300.00207 * 21 20 19 37 37 H 1.09002 * 110.41136 * 319.74338 * 23 22 21 38 38 H 1.08998 * 110.40632 * 82.06470 * 23 22 21 39 39 H 1.09005 * 110.32197 * 142.81202 * 24 23 22 40 40 H 1.09002 * 110.32079 * 265.01321 * 24 23 22 41 41 H 1.08994 * 110.29934 * 241.08709 * 25 24 23 42 42 H 1.08999 * 110.31853 * 118.89305 * 25 24 23 43 43 H 1.09002 * 110.40679 * 277.81057 * 26 22 21 44 44 H 1.09001 * 110.41514 * 40.13892 * 26 22 21 45 45 H 1.07995 * 126.31002 * 179.75507 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0082 -1.2123 0.0005 8 1 3.0580 -1.2300 -0.2528 9 6 1.3433 -2.4095 0.3314 10 6 0.2139 -2.3862 1.1707 11 6 -0.4278 -3.5612 1.4881 12 9 -1.5116 -3.5365 2.2944 13 6 0.0318 -4.7753 0.9855 14 6 1.1334 -4.8216 0.1559 15 6 1.8063 -3.6501 -0.1777 16 6 2.9913 -3.6973 -1.0614 17 6 3.2121 -2.9052 -2.2083 18 7 4.3676 -3.2391 -2.7160 19 7 4.9333 -4.2482 -1.9283 20 6 6.2267 -4.8950 -2.1629 21 6 6.2615 -5.4659 -3.5820 22 7 7.5582 -6.1150 -3.8169 23 6 7.7242 -6.4693 -5.2501 24 6 8.8056 -7.5710 -5.2585 25 6 8.7479 -8.1959 -3.8460 26 6 7.6377 -7.4178 -3.1074 27 6 4.0836 -4.5273 -0.9208 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1483 -1.4481 1.5648 30 1 -0.4819 -5.6896 1.2437 31 1 1.4770 -5.7694 -0.2313 32 1 2.5418 -2.1535 -2.5983 33 1 6.3653 -5.7018 -1.4431 34 1 7.0256 -4.1627 -2.0462 35 1 6.1228 -4.6591 -4.3017 36 1 5.4626 -6.1982 -3.6986 37 1 6.7886 -6.8519 -5.6580 38 1 8.0600 -5.6026 -5.8195 39 1 8.5764 -8.3208 -6.0158 40 1 9.7881 -7.1356 -5.4409 41 1 9.7029 -8.0679 -3.3366 42 1 8.4907 -9.2532 -3.9101 43 1 7.9105 -7.2658 -2.0630 44 1 6.6879 -7.9479 -3.1781 45 1 4.2317 -5.2636 -0.1448 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222487855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:17 Heat of formation + Delta-G solvation = 34.024783 kcal Electronic energy + Delta-G solvation = -26881.178841 eV Core-core repulsion = 23006.340851 eV Total energy + Delta-G solvation = -3874.837989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.50309 -41.87737 -39.84659 -39.03562 -35.55031 -35.34321 -32.75060 -32.10205 -31.56724 -29.87574 -29.57444 -28.06262 -27.06214 -24.48325 -23.28674 -22.94469 -22.00319 -21.75893 -21.06199 -20.78201 -19.40942 -18.05475 -17.68275 -16.92919 -16.86669 -16.64340 -16.37291 -16.26797 -16.16946 -15.63879 -15.23886 -15.14222 -14.68471 -14.62454 -14.31188 -14.02247 -13.84240 -13.60949 -13.46587 -13.31417 -13.12721 -12.96323 -12.79811 -12.56395 -12.43027 -12.32282 -12.15817 -12.10405 -12.03397 -11.81633 -11.46558 -11.36076 -11.27888 -11.05265 -10.19898 -9.62941 -9.57413 -9.41805 -8.77497 -8.47440 -6.32798 0.67030 0.97284 1.14904 1.38714 1.48388 1.51796 1.67433 2.10842 2.19507 2.70115 2.99331 3.53091 3.64765 3.71238 3.86127 3.87324 3.95669 4.16283 4.16811 4.22144 4.30417 4.35271 4.46853 4.58035 4.60882 4.62954 4.70474 4.78574 4.86577 4.87323 4.96578 5.00088 5.03835 5.08752 5.16474 5.20990 5.22393 5.28229 5.39310 5.69524 5.71850 5.81990 5.84912 5.88303 6.04517 6.08904 6.30419 6.36448 6.64882 6.90249 6.93360 6.98481 8.30040 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014422 B = 0.002780 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.030275 B =10071.167178 C =11667.151040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.117 3.883 10 C -0.223 4.223 11 C 0.085 3.915 12 F -0.170 7.170 13 C -0.272 4.272 14 C -0.053 4.053 15 C -0.136 4.136 16 C -0.166 4.166 17 C 0.061 3.939 18 N -0.329 5.329 19 N -0.370 5.370 20 C 0.144 3.856 21 C 0.048 3.952 22 N -0.517 5.517 23 C 0.028 3.972 24 C -0.121 4.121 25 C -0.122 4.122 26 C 0.022 3.978 27 C 0.052 3.948 28 H 0.289 0.711 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.041 0.959 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.769 -13.075 -6.930 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.114 3.886 10 C -0.244 4.244 11 C 0.066 3.934 12 F -0.149 7.149 13 C -0.291 4.291 14 C -0.071 4.071 15 C -0.138 4.138 16 C -0.177 4.177 17 C -0.124 4.124 18 N -0.151 5.151 19 N -0.153 5.153 20 C 0.024 3.976 21 C -0.082 4.082 22 N -0.242 5.242 23 C -0.100 4.100 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.106 4.106 27 C -0.095 4.095 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.185 0.815 33 H 0.137 0.863 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 16.914 -12.379 -7.703 22.330 hybrid contribution -1.873 0.574 0.612 2.053 sum 15.040 -11.805 -7.091 20.392 Atomic orbital electron populations 1.69862 1.08952 1.30720 1.34874 1.26707 0.95296 1.04305 0.91434 0.85401 0.78928 0.76365 0.80063 1.18433 1.19360 1.18660 1.19571 0.97458 0.91201 1.40632 0.90127 1.17593 0.90018 0.93079 0.87910 1.21136 1.02227 0.95598 1.05407 1.17987 0.85522 0.95928 0.93966 1.91314 1.53838 1.97677 1.72101 1.20500 1.03875 0.95099 1.09671 1.20705 0.93621 0.97149 0.95661 1.18259 0.99045 0.92941 1.03574 1.19026 0.97147 1.02405 0.99124 1.23911 0.94156 0.99229 0.95094 1.76948 1.11269 1.07340 1.19527 1.48424 1.16834 1.29156 1.20897 1.21672 0.80199 0.97562 0.98208 1.22275 0.90509 0.98692 0.96697 1.65303 1.29213 1.21600 1.08070 1.23166 0.98606 0.99181 0.88998 1.22348 0.98931 0.97038 0.97624 1.22355 0.98976 0.99447 0.95231 1.23335 0.98673 0.88827 0.99756 1.23199 0.90079 1.01701 0.94500 0.90039 0.87605 0.85726 0.84915 0.81499 0.86321 0.89318 0.91230 0.94568 0.94101 0.90191 0.90200 0.90555 0.90409 0.90175 0.89059 0.93731 0.78152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.41 10.98 21.84 0.24 -42.17 16 2 C 0.04 1.91 5.17 85.27 0.44 2.35 16 3 Si 0.97 38.22 29.59 68.60 2.03 40.25 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.46 -23.56 7.73 23.34 0.18 -23.38 16 8 H 0.08 4.09 6.70 -2.91 -0.02 4.07 16 9 C 0.12 6.05 5.57 -21.13 -0.12 5.93 16 10 C -0.22 -11.90 8.63 22.73 0.20 -11.70 16 11 C 0.09 4.18 7.28 22.35 0.16 4.34 16 12 F -0.17 -8.15 17.26 44.97 0.78 -7.37 16 13 C -0.27 -11.68 10.01 22.44 0.22 -11.45 16 14 C -0.05 -2.15 9.69 22.43 0.22 -1.94 16 15 C -0.14 -6.12 5.82 -19.60 -0.11 -6.24 16 16 C -0.17 -6.63 4.96 -20.09 -0.10 -6.73 16 17 C 0.06 2.50 10.37 85.59 0.89 3.39 16 18 N -0.33 -12.26 12.34 -56.34 -0.70 -12.96 16 19 N -0.37 -11.24 3.66 -346.04 -1.27 -12.51 16 20 C 0.14 3.11 6.61 86.38 0.57 3.68 16 21 C 0.05 1.00 5.01 86.30 0.43 1.44 16 22 N -0.52 -9.06 5.34 -881.45 -4.71 -13.77 16 23 C 0.03 0.44 6.45 86.45 0.56 1.00 16 24 C -0.12 -1.37 7.02 31.59 0.22 -1.15 16 25 C -0.12 -1.29 7.01 31.60 0.22 -1.07 16 26 C 0.02 0.29 5.92 86.45 0.51 0.80 16 27 C 0.05 1.63 11.39 84.17 0.96 2.59 16 28 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 29 H 0.11 6.00 6.24 -2.91 -0.02 5.98 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.17 7.15 7.95 -2.91 -0.02 7.13 16 33 H 0.12 1.85 7.39 -2.38 -0.02 1.83 16 34 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.07 1.75 8.08 -2.38 -0.02 1.73 16 36 H 0.04 0.80 7.76 -2.39 -0.02 0.79 16 37 H 0.04 0.66 8.00 -2.39 -0.02 0.64 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.07 7.85 -2.39 -0.02 1.05 16 44 H 0.04 0.62 7.75 -2.39 -0.02 0.61 16 45 H 0.20 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -61.15 374.15 2.82 -58.33 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.99 Total: 28.35 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 5.45 Total: -38.15 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -6.43 Total: -81.41 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.78 Total: -7.37 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 2.03 Total: 40.25 kcal Total: -61.15 2.82 -58.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222487855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.358 kcal (2) G-P(sol) polarization free energy of solvation -61.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds