Wall clock time and date at job start Sat Apr 11 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00300 * 2 1 4 4 H 1.48495 * 109.47055 * 239.99638 * 3 2 1 5 5 H 1.48502 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46878 * 119.99337 * 3 2 1 7 7 C 1.39922 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 162.80767 * 7 2 1 9 9 C 1.41427 * 120.00233 * 342.80862 * 7 2 1 10 10 C 1.40746 * 120.17285 * 334.76280 * 9 7 2 11 11 C 1.37902 * 119.95371 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.83705 * 179.97438 * 11 10 9 13 13 C 1.38676 * 120.32413 * 359.97438 * 11 10 9 14 14 C 1.39622 * 120.35297 * 0.02562 * 13 11 10 15 15 C 1.48489 * 119.97976 * 180.02562 * 14 13 11 16 16 C 1.40839 * 126.22183 * 179.97438 * 15 14 13 17 17 N 1.30669 * 108.09838 * 179.76167 * 16 15 14 18 18 N 1.40011 * 108.52374 * 0.40176 * 17 16 15 19 19 C 1.46503 * 125.89752 * 179.85000 * 18 17 16 20 20 C 1.53007 * 109.47004 * 304.69287 * 19 18 17 21 21 N 1.46895 * 109.46999 * 179.97438 * 20 19 18 22 22 C 1.48560 * 111.00165 * 190.00212 * 21 20 19 23 23 C 1.54377 * 104.70039 * 200.90611 * 22 21 20 24 24 C 1.54571 * 104.91501 * 23.87846 * 23 22 21 25 25 C 1.48565 * 110.99775 * 74.58521 * 21 20 19 26 26 C 1.34818 * 108.20913 * 359.59018 * 18 17 16 27 27 C 1.38728 * 120.03395 * 0.27770 * 14 13 11 28 28 H 0.97005 * 119.99208 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.02254 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.81915 * 180.02562 * 13 11 10 31 31 H 1.08004 * 125.95029 * 0.03709 * 16 15 14 32 32 H 1.08993 * 109.47166 * 184.69265 * 19 18 17 33 33 H 1.08998 * 109.46722 * 64.68958 * 19 18 17 34 34 H 1.09003 * 109.47087 * 60.00053 * 20 19 18 35 35 H 1.08993 * 109.47297 * 299.99871 * 20 19 18 36 36 H 1.09003 * 110.40575 * 319.73700 * 22 21 20 37 37 H 1.08999 * 110.41338 * 82.06383 * 22 21 20 38 38 H 1.08995 * 110.32718 * 142.80642 * 23 22 21 39 39 H 1.09006 * 110.32613 * 265.01633 * 23 22 21 40 40 H 1.08999 * 110.29821 * 241.08969 * 24 23 22 41 41 H 1.08994 * 110.32422 * 118.89647 * 24 23 22 42 42 H 1.09000 * 110.40788 * 277.81385 * 25 21 20 43 43 H 1.08994 * 110.41427 * 40.14082 * 25 21 20 44 44 H 1.08004 * 126.19780 * 180.24082 * 26 18 17 45 45 H 1.08007 * 120.15735 * 179.69994 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0517 -1.2329 -0.2759 9 6 1.3481 -2.4091 0.3631 10 6 0.2190 -2.3683 1.2024 11 6 -0.4211 -3.5385 1.5526 12 9 -1.5044 -3.4967 2.3588 13 6 0.0416 -4.7578 1.0813 14 6 1.1605 -4.8135 0.2479 15 6 1.6485 -6.1237 -0.2524 16 6 2.7574 -6.3319 -1.0953 17 7 2.8698 -7.6162 -1.3084 18 7 1.8401 -8.2725 -0.6233 19 6 1.6066 -9.7187 -0.6042 20 6 1.4777 -10.2335 -2.0393 21 7 1.2442 -11.6837 -2.0201 22 6 1.3520 -12.2584 -3.3858 23 6 0.5832 -13.5950 -3.3101 24 6 -0.4052 -13.4195 -2.1347 25 6 -0.1476 -11.9933 -1.6026 26 6 1.1040 -7.3445 0.0204 27 6 1.8195 -3.6460 -0.1086 28 1 -0.4849 0.8402 -0.0004 29 1 -0.1462 -1.4213 1.5712 30 1 -0.4662 -5.6691 1.3604 31 1 3.4051 -5.5642 -1.4924 32 1 0.6876 -9.9312 -0.0581 33 1 2.4438 -10.2154 -0.1138 34 1 2.3968 -10.0211 -2.5854 35 1 0.6406 -9.7368 -2.5297 36 1 0.8886 -11.5942 -4.1153 37 1 2.3965 -12.4346 -3.6427 38 1 0.0416 -13.7734 -4.2390 39 1 1.2707 -14.4164 -3.1081 40 1 -0.2026 -14.1560 -1.3572 41 1 -1.4325 -13.5123 -2.4869 42 1 -0.2321 -11.9719 -0.5161 43 1 -0.8453 -11.2864 -2.0514 44 1 0.2397 -7.5332 0.6400 45 1 2.6881 -3.6872 -0.7492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222500629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:26 Heat of formation + Delta-G solvation = 46.344728 kcal Electronic energy + Delta-G solvation = -26334.110018 eV Core-core repulsion = 22459.806262 eV Total energy + Delta-G solvation = -3874.303756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.63039 -40.89434 -39.22731 -37.29357 -34.62110 -33.75222 -31.77614 -30.88922 -29.50055 -29.29196 -28.61616 -26.76145 -25.46497 -23.64956 -22.02148 -21.50521 -21.30451 -20.92749 -19.79358 -19.58454 -17.65130 -16.75321 -16.36228 -16.08424 -15.67199 -15.18344 -14.92307 -14.68365 -14.54927 -14.44464 -14.36724 -14.27907 -13.68947 -13.23394 -13.11769 -12.90716 -12.76360 -12.57559 -12.24874 -11.96284 -11.88938 -11.78991 -11.61644 -11.57323 -11.25652 -11.10811 -11.04458 -10.90233 -10.74093 -10.53777 -10.37009 -9.93717 -9.66710 -9.30548 -9.17772 -8.93907 -8.57215 -7.46918 -6.92456 -6.77882 -4.48808 1.97165 2.52651 2.59081 2.68694 3.04214 3.05667 3.11061 3.64439 3.68401 3.88190 4.21159 4.25994 4.52539 4.55837 4.57575 4.80460 4.87485 5.02463 5.10549 5.14214 5.18975 5.25203 5.35686 5.42487 5.48536 5.55713 5.56277 5.58379 5.59140 5.69632 5.76630 5.94452 6.11567 6.20397 6.32034 6.40914 6.53570 6.60649 6.85279 6.98417 6.99800 7.18224 7.26092 7.53272 7.67068 7.76908 7.89379 7.99003 8.19946 8.50522 8.77639 8.80285 10.10381 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002125 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.618613 B =13176.065512 C =13960.362753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.131 3.869 10 C -0.201 4.201 11 C 0.107 3.893 12 F -0.168 7.168 13 C -0.271 4.271 14 C 0.036 3.964 15 C -0.166 4.166 16 C 0.063 3.937 17 N -0.304 5.304 18 N -0.379 5.379 19 C 0.146 3.854 20 C 0.035 3.965 21 N -0.510 5.510 22 C 0.033 3.967 23 C -0.125 4.125 24 C -0.124 4.124 25 C 0.025 3.975 26 C 0.052 3.948 27 C -0.217 4.217 28 H 0.283 0.717 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.171 0.829 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.100 -19.892 -4.131 20.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.128 3.872 10 C -0.222 4.222 11 C 0.088 3.912 12 F -0.147 7.147 13 C -0.292 4.292 14 C 0.035 3.965 15 C -0.177 4.177 16 C -0.123 4.123 17 N -0.125 5.125 18 N -0.162 5.162 19 C 0.024 3.976 20 C -0.094 4.094 21 N -0.235 5.235 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.093 4.093 27 C -0.237 4.237 28 H 0.094 0.906 29 H 0.146 0.854 30 H 0.115 0.885 31 H 0.202 0.798 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.188 0.812 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.890 -21.031 -4.336 21.492 hybrid contribution -1.088 1.874 -0.012 2.168 sum -0.199 -19.157 -4.347 19.645 Atomic orbital electron populations 1.69818 1.07666 1.29653 1.34092 1.25964 0.94764 1.01548 0.92118 0.86318 0.80118 0.79961 0.80092 1.18871 1.20304 1.18687 1.19551 0.98027 0.90866 1.40132 0.89905 1.17272 0.90055 0.92188 0.87676 1.21304 1.01116 0.95888 1.03868 1.17555 0.85268 0.95113 0.93277 1.91331 1.53803 1.97589 1.72010 1.20120 1.03273 0.94926 1.10842 1.17365 0.94029 0.89540 0.95587 1.19150 0.99731 0.92992 1.05824 1.24006 0.97630 0.93217 0.97458 1.77118 1.09233 1.07008 1.19123 1.48298 1.22800 1.06058 1.39036 1.21428 1.02990 0.75497 0.97661 1.22493 1.02708 0.87597 0.96647 1.65283 1.24291 1.11460 1.22441 1.23100 1.01309 0.95399 0.89663 1.22345 0.98034 0.97424 0.98466 1.22340 0.99226 0.96587 0.98100 1.23246 0.89238 0.96498 1.01330 1.22486 0.98458 0.88761 0.99590 1.20982 1.03903 0.91606 1.07233 0.90555 0.85436 0.88502 0.79829 0.89126 0.89212 0.89142 0.93793 0.93640 0.89833 0.91267 0.90872 0.90880 0.91285 0.89893 0.93511 0.81162 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 10.96 55.55 0.61 -19.44 16 2 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 3 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.63 9.05 -37.74 -0.34 -11.97 16 8 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.38 5.56 -106.87 -0.59 2.79 16 10 C -0.20 -5.26 8.66 -38.76 -0.34 -5.60 16 11 C 0.11 2.61 7.28 -39.54 -0.29 2.33 16 12 F -0.17 -3.97 17.26 2.25 0.04 -3.93 16 13 C -0.27 -6.04 9.55 -38.90 -0.37 -6.41 16 14 C 0.04 0.79 5.87 -104.97 -0.62 0.17 16 15 C -0.17 -3.08 6.04 -105.34 -0.64 -3.72 16 16 C 0.06 1.09 11.41 -17.06 -0.19 0.90 16 17 N -0.30 -5.02 12.38 30.80 0.38 -4.64 16 18 N -0.38 -5.50 3.67 -61.10 -0.22 -5.72 16 19 C 0.15 1.56 6.61 -4.04 -0.03 1.54 16 20 C 0.03 0.36 5.01 -3.82 -0.02 0.34 16 21 N -0.51 -4.53 5.34 -229.97 -1.23 -5.76 16 22 C 0.03 0.26 6.45 -2.18 -0.01 0.24 16 23 C -0.12 -0.78 7.02 -25.18 -0.18 -0.95 16 24 C -0.12 -0.78 7.01 -25.18 -0.18 -0.95 16 25 C 0.02 0.19 5.92 -2.18 -0.01 0.17 16 26 C 0.05 0.82 10.82 -16.89 -0.18 0.63 16 27 C -0.22 -5.08 9.32 -38.54 -0.36 -5.43 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.13 3.47 6.18 -52.49 -0.32 3.14 16 30 H 0.10 1.90 6.99 -52.49 -0.37 1.54 16 31 H 0.18 2.83 7.34 -52.48 -0.39 2.44 16 32 H 0.09 0.79 7.39 -51.93 -0.38 0.40 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.04 0.49 7.77 -51.93 -0.40 0.08 16 36 H 0.05 0.36 8.00 -51.93 -0.42 -0.05 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 43 H 0.05 0.37 7.75 -51.93 -0.40 -0.03 16 44 H 0.17 2.26 7.27 -52.48 -0.38 1.88 16 45 H 0.10 2.16 7.03 -52.48 -0.37 1.79 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -28.51 373.93 -10.60 -39.10 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.34 Total: 5.84 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -4.43 Total: -24.19 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.46 Total: -35.57 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.51 -10.60 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222500629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.449 kcal (2) G-P(sol) polarization free energy of solvation -28.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds