Wall clock time and date at job start Sat Apr 11 2020 02:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86800 * 120.00300 * 2 1 4 4 H 1.48495 * 109.47055 * 239.99638 * 3 2 1 5 5 H 1.48502 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46878 * 119.99337 * 3 2 1 7 7 C 1.39922 * 119.99631 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 162.80767 * 7 2 1 9 9 C 1.41427 * 120.00233 * 342.80862 * 7 2 1 10 10 C 1.40746 * 120.17285 * 334.76280 * 9 7 2 11 11 C 1.37902 * 119.95371 * 179.97438 * 10 9 7 12 12 F 1.35103 * 119.83705 * 179.97438 * 11 10 9 13 13 C 1.38676 * 120.32413 * 359.97438 * 11 10 9 14 14 C 1.39622 * 120.35297 * 0.02562 * 13 11 10 15 15 C 1.48489 * 119.97976 * 180.02562 * 14 13 11 16 16 C 1.40839 * 126.22183 * 179.97438 * 15 14 13 17 17 N 1.30669 * 108.09838 * 179.76167 * 16 15 14 18 18 N 1.40011 * 108.52374 * 0.40176 * 17 16 15 19 19 C 1.46503 * 125.89752 * 179.85000 * 18 17 16 20 20 C 1.53007 * 109.47004 * 304.69287 * 19 18 17 21 21 N 1.46895 * 109.46999 * 179.97438 * 20 19 18 22 22 C 1.48560 * 111.00165 * 190.00212 * 21 20 19 23 23 C 1.54377 * 104.70039 * 200.90611 * 22 21 20 24 24 C 1.54571 * 104.91501 * 23.87846 * 23 22 21 25 25 C 1.48565 * 110.99775 * 74.58521 * 21 20 19 26 26 C 1.34818 * 108.20913 * 359.59018 * 18 17 16 27 27 C 1.38728 * 120.03395 * 0.27770 * 14 13 11 28 28 H 0.97005 * 119.99208 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.02254 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.81915 * 180.02562 * 13 11 10 31 31 H 1.08004 * 125.95029 * 0.03709 * 16 15 14 32 32 H 1.08993 * 109.47166 * 184.69265 * 19 18 17 33 33 H 1.08998 * 109.46722 * 64.68958 * 19 18 17 34 34 H 1.09003 * 109.47087 * 60.00053 * 20 19 18 35 35 H 1.08993 * 109.47297 * 299.99871 * 20 19 18 36 36 H 1.09003 * 110.40575 * 319.73700 * 22 21 20 37 37 H 1.08999 * 110.41338 * 82.06383 * 22 21 20 38 38 H 1.08995 * 110.32718 * 142.80642 * 23 22 21 39 39 H 1.09006 * 110.32613 * 265.01633 * 23 22 21 40 40 H 1.08999 * 110.29821 * 241.08969 * 24 23 22 41 41 H 1.08994 * 110.32422 * 118.89647 * 24 23 22 42 42 H 1.09000 * 110.40788 * 277.81385 * 25 21 20 43 43 H 1.08994 * 110.41427 * 40.14082 * 25 21 20 44 44 H 1.08004 * 126.19780 * 180.24082 * 26 18 17 45 45 H 1.08007 * 120.15735 * 179.69994 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6962 -1.2124 5 1 1.2775 2.7465 -0.0006 6 1 3.0961 1.6963 1.2126 7 6 2.0079 -1.2118 0.0005 8 1 3.0517 -1.2329 -0.2759 9 6 1.3481 -2.4091 0.3631 10 6 0.2190 -2.3683 1.2024 11 6 -0.4211 -3.5385 1.5526 12 9 -1.5044 -3.4967 2.3588 13 6 0.0416 -4.7578 1.0813 14 6 1.1605 -4.8135 0.2479 15 6 1.6485 -6.1237 -0.2524 16 6 2.7574 -6.3319 -1.0953 17 7 2.8698 -7.6162 -1.3084 18 7 1.8401 -8.2725 -0.6233 19 6 1.6066 -9.7187 -0.6042 20 6 1.4777 -10.2335 -2.0393 21 7 1.2442 -11.6837 -2.0201 22 6 1.3520 -12.2584 -3.3858 23 6 0.5832 -13.5950 -3.3101 24 6 -0.4052 -13.4195 -2.1347 25 6 -0.1476 -11.9933 -1.6026 26 6 1.1040 -7.3445 0.0204 27 6 1.8195 -3.6460 -0.1086 28 1 -0.4849 0.8402 -0.0004 29 1 -0.1462 -1.4213 1.5712 30 1 -0.4662 -5.6691 1.3604 31 1 3.4051 -5.5642 -1.4924 32 1 0.6876 -9.9312 -0.0581 33 1 2.4438 -10.2154 -0.1138 34 1 2.3968 -10.0211 -2.5854 35 1 0.6406 -9.7368 -2.5297 36 1 0.8886 -11.5942 -4.1153 37 1 2.3965 -12.4346 -3.6427 38 1 0.0416 -13.7734 -4.2390 39 1 1.2707 -14.4164 -3.1081 40 1 -0.2026 -14.1560 -1.3572 41 1 -1.4325 -13.5123 -2.4869 42 1 -0.2321 -11.9719 -0.5161 43 1 -0.8453 -11.2864 -2.0514 44 1 0.2397 -7.5332 0.6400 45 1 2.6881 -3.6872 -0.7492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222500629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:25 Heat of formation + Delta-G solvation = 31.854103 kcal Electronic energy + Delta-G solvation = -26334.738379 eV Core-core repulsion = 22459.806262 eV Total energy + Delta-G solvation = -3874.932117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.52809 -42.16432 -39.87809 -39.07628 -35.86403 -35.23902 -32.79811 -32.41232 -31.30772 -29.98677 -29.71576 -27.99225 -27.32333 -24.57421 -23.61414 -22.93556 -22.00877 -21.72445 -21.28236 -20.91572 -19.28122 -18.07709 -17.47220 -16.98233 -16.88032 -16.63093 -16.44913 -16.35159 -16.21284 -16.02678 -15.42412 -15.24501 -14.75210 -14.67569 -14.31306 -14.09007 -14.00831 -13.62783 -13.49060 -13.40390 -13.04024 -12.88585 -12.74619 -12.66155 -12.41127 -12.37450 -12.17823 -12.13406 -12.04608 -11.86558 -11.56621 -11.40470 -11.36882 -11.08427 -10.40344 -10.18835 -9.62798 -9.33796 -8.68996 -8.47970 -6.41524 0.50670 0.85289 1.06619 1.40355 1.49334 1.50245 1.53497 2.07862 2.21576 2.78096 2.94195 3.44524 3.68061 3.68907 3.73001 3.80710 3.89256 3.97278 4.06625 4.16795 4.24875 4.32570 4.40715 4.50919 4.58951 4.60755 4.65982 4.73703 4.77924 4.83611 4.85464 4.87883 4.95750 5.02107 5.07255 5.16272 5.19387 5.26058 5.33948 5.55306 5.73728 5.78760 5.80149 5.85880 5.97364 6.01188 6.08858 6.32957 6.61451 6.71161 6.88989 6.92179 8.30324 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.022348 B = 0.002125 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.618613 B =13176.065512 C =13960.362753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.489 4.489 8 H 0.088 0.912 9 C 0.106 3.894 10 C -0.234 4.234 11 C 0.096 3.904 12 F -0.167 7.167 13 C -0.269 4.269 14 C 0.050 3.950 15 C -0.206 4.206 16 C 0.058 3.942 17 N -0.316 5.316 18 N -0.369 5.369 19 C 0.141 3.859 20 C 0.045 3.955 21 N -0.515 5.515 22 C 0.028 3.972 23 C -0.122 4.122 24 C -0.123 4.123 25 C 0.021 3.979 26 C 0.076 3.924 27 C -0.232 4.232 28 H 0.289 0.711 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.192 0.808 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.043 0.957 44 H 0.202 0.798 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -22.091 -4.219 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.106 0.894 9 C 0.104 3.896 10 C -0.254 4.254 11 C 0.077 3.923 12 F -0.146 7.146 13 C -0.289 4.289 14 C 0.048 3.952 15 C -0.217 4.217 16 C -0.127 4.127 17 N -0.137 5.137 18 N -0.150 5.150 19 C 0.021 3.979 20 C -0.084 4.084 21 N -0.240 5.240 22 C -0.099 4.099 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.107 4.107 26 C -0.071 4.071 27 C -0.252 4.252 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.209 0.791 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.218 0.782 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.955 -23.277 -4.438 23.715 hybrid contribution -1.138 2.294 -0.007 2.560 sum -0.183 -20.983 -4.445 21.450 Atomic orbital electron populations 1.69892 1.09245 1.30840 1.34872 1.26858 0.95456 1.04879 0.91061 0.85207 0.78712 0.75297 0.80272 1.17919 1.19517 1.18394 1.19853 0.98483 0.91845 1.41572 0.89434 1.17612 0.90412 0.93538 0.88087 1.21210 1.02603 0.95772 1.05819 1.17752 0.85358 0.95609 0.93545 1.91322 1.53660 1.97631 1.71950 1.20440 1.03271 0.95120 1.10095 1.17592 0.92961 0.90630 0.94002 1.19029 1.01694 0.92537 1.08458 1.24165 0.97548 0.93764 0.97271 1.77114 1.10160 1.06723 1.19706 1.48623 1.21583 1.07347 1.37479 1.21763 1.04655 0.73153 0.98346 1.22297 1.01499 0.88626 0.96004 1.65309 1.25376 1.10182 1.23111 1.23171 1.01587 0.96134 0.89046 1.22353 0.98056 0.96518 0.99078 1.22359 0.99742 0.95840 0.98158 1.23339 0.88224 0.97188 1.01922 1.22876 0.98198 0.87929 0.98110 1.21184 1.04669 0.91573 1.07727 0.90018 0.87600 0.85341 0.79105 0.86316 0.88508 0.90790 0.94766 0.94159 0.89907 0.90303 0.90429 0.90326 0.90346 0.88972 0.93913 0.78153 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.41 10.96 21.82 0.24 -43.17 16 2 C 0.03 1.65 5.14 85.25 0.44 2.09 16 3 Si 0.98 37.66 29.59 68.60 2.03 39.69 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 5 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 7 C -0.49 -25.72 9.05 23.46 0.21 -25.50 16 8 H 0.09 4.33 7.90 -2.91 -0.02 4.31 16 9 C 0.11 5.68 5.56 -21.32 -0.12 5.56 16 10 C -0.23 -12.70 8.66 22.80 0.20 -12.51 16 11 C 0.10 4.77 7.28 22.29 0.16 4.94 16 12 F -0.17 -7.90 17.26 44.97 0.78 -7.13 16 13 C -0.27 -11.71 9.55 22.71 0.22 -11.49 16 14 C 0.05 2.13 5.87 -20.09 -0.12 2.01 16 15 C -0.21 -7.30 6.04 -20.33 -0.12 -7.42 16 16 C 0.06 1.95 11.41 85.50 0.98 2.93 16 17 N -0.32 -9.93 12.38 -56.46 -0.70 -10.63 16 18 N -0.37 -9.70 3.67 -347.22 -1.27 -10.97 16 19 C 0.14 2.59 6.61 86.38 0.57 3.16 16 20 C 0.05 0.84 5.01 86.31 0.43 1.27 16 21 N -0.52 -8.08 5.34 -881.49 -4.71 -12.79 16 22 C 0.03 0.40 6.45 86.45 0.56 0.95 16 23 C -0.12 -1.25 7.02 31.60 0.22 -1.03 16 24 C -0.12 -1.21 7.01 31.60 0.22 -0.99 16 25 C 0.02 0.26 5.92 86.45 0.51 0.77 16 26 C 0.08 2.15 10.82 83.81 0.91 3.06 16 27 C -0.23 -11.00 9.32 22.95 0.21 -10.79 16 28 H 0.29 13.85 8.30 -92.70 -0.77 13.08 16 29 H 0.11 6.10 6.18 -2.91 -0.02 6.08 16 30 H 0.13 4.67 6.99 -2.91 -0.02 4.65 16 31 H 0.19 5.82 7.34 -2.91 -0.02 5.80 16 32 H 0.12 1.56 7.39 -2.39 -0.02 1.54 16 33 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.03 0.70 7.77 -2.39 -0.02 0.68 16 36 H 0.04 0.60 8.00 -2.39 -0.02 0.58 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 39 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.97 7.85 -2.39 -0.02 0.95 16 43 H 0.04 0.58 7.75 -2.39 -0.02 0.56 16 44 H 0.20 4.36 7.27 -2.91 -0.02 4.34 16 45 H 0.11 4.91 7.03 -2.91 -0.02 4.88 16 Total: -1.00 -63.10 373.93 2.85 -60.25 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 1.00 Total: 27.74 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 5.48 Total: -42.99 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -6.44 Total: -77.56 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.78 Total: -7.13 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -63.10 2.85 -60.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222500629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.103 kcal (2) G-P(sol) polarization free energy of solvation -63.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds