Wall clock time and date at job start Sat Apr 11 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99963 * 2 1 4 4 O 1.21291 * 119.99941 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00111 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.47124 * 180.02562 * 5 3 2 7 7 C 1.46906 * 111.00315 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.46693 * 35.00071 * 7 6 5 9 9 C 1.52999 * 109.46904 * 275.00420 * 7 6 5 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47164 * 59.99702 * 10 9 7 12 12 C 1.53002 * 109.47415 * 300.00027 * 11 10 9 13 13 C 1.52996 * 109.46972 * 59.99860 * 12 11 10 14 14 H 1.09000 * 109.47054 * 60.00300 * 13 12 11 15 15 N 1.46500 * 109.46993 * 180.02562 * 13 12 11 16 16 C 1.34780 * 119.99887 * 274.99908 * 15 13 12 17 17 O 1.21279 * 120.00223 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99892 * 179.97438 * 16 15 13 19 19 S 1.80997 * 109.47431 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00464 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99370 * 0.02562 * 20 19 18 22 22 C 1.38788 * 120.00027 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00495 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47372 * 59.99621 * 24 22 20 26 26 H 1.48497 * 109.47496 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46872 * 299.99604 * 24 22 20 28 28 H 1.08998 * 109.46796 * 60.00353 * 1 2 3 29 29 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47352 * 299.99615 * 1 2 3 31 31 H 0.96997 * 120.00137 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47065 * 60.00526 * 5 3 2 33 33 H 1.09001 * 109.47432 * 299.99859 * 5 3 2 34 34 H 1.00906 * 111.00324 * 56.04727 * 6 5 3 35 35 H 1.08993 * 109.47839 * 59.99803 * 9 7 6 36 36 H 1.09000 * 109.47160 * 299.99365 * 9 7 6 37 37 H 1.09001 * 109.46998 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47050 * 299.99699 * 10 9 7 39 39 H 1.09000 * 109.47140 * 60.00051 * 11 10 9 40 40 H 1.09001 * 109.47230 * 179.97438 * 11 10 9 41 41 H 1.08992 * 109.46974 * 180.02562 * 12 11 10 42 42 H 1.08996 * 109.46550 * 300.00288 * 12 11 10 43 43 H 0.96999 * 120.00261 * 95.00272 * 15 13 12 44 44 H 1.09005 * 109.47348 * 300.00715 * 18 16 15 45 45 H 1.09002 * 109.47098 * 60.00223 * 18 16 15 46 46 H 0.96995 * 120.00082 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1355 2.5522 0.0011 7 6 5.6040 2.5915 0.0010 8 1 5.9897 1.7599 -0.5887 9 6 6.1172 2.4789 1.4380 10 6 7.6467 2.5192 1.4378 11 6 8.1221 3.8396 0.8285 12 6 7.6088 3.9523 -0.6085 13 6 6.0793 3.9120 -0.6083 14 1 5.6940 4.7438 -0.0186 15 7 5.5879 4.0192 -1.9842 16 6 5.4271 5.2320 -2.5498 17 8 5.6897 6.2346 -1.9198 18 6 4.9221 5.3424 -3.9653 19 16 4.8157 7.0874 -4.4337 20 6 4.2178 6.9257 -6.0833 21 1 4.0340 5.9452 -6.4972 22 6 3.9830 8.0582 -6.8505 23 7 4.2065 9.2532 -6.3457 24 14 3.3484 7.8867 -8.5990 25 1 2.0393 7.1857 -8.5841 26 1 3.1807 9.2346 -9.1992 27 1 4.3202 7.1034 -9.4037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6533 -0.8892 33 1 4.0089 0.6536 0.8908 34 1 3.7597 3.0684 0.7825 35 1 5.7790 1.5380 1.8720 36 1 5.7316 3.3104 2.0278 37 1 8.0124 2.4394 2.4616 38 1 8.0320 1.6874 0.8481 39 1 7.7367 4.6714 1.4182 40 1 9.2117 3.8685 0.8288 41 1 7.9478 4.8927 -1.0426 42 1 7.9941 3.1205 -1.1981 43 1 5.3782 3.2175 -2.4883 44 1 5.6087 4.8273 -4.6373 45 1 3.9347 4.8862 -4.0354 46 1 4.0420 10.0446 -6.8818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224902236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:30 Heat of formation + Delta-G solvation = -85.634938 kcal Electronic energy + Delta-G solvation = -25971.861474 eV Core-core repulsion = 22214.905812 eV Total energy + Delta-G solvation = -3756.955662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23121 -39.57203 -38.06072 -35.18701 -34.74361 -33.81226 -32.34028 -30.41742 -30.17650 -28.33961 -27.34003 -25.39206 -24.97572 -22.79068 -21.86723 -20.94457 -20.26819 -19.90565 -17.97914 -17.55442 -16.50403 -16.29223 -16.10012 -16.05009 -15.16521 -15.08248 -14.72699 -14.67668 -14.36981 -14.06282 -13.95378 -13.91101 -13.36136 -13.19560 -13.01958 -12.87604 -12.65285 -12.59907 -12.41962 -12.38284 -11.82708 -11.45524 -11.32967 -11.07225 -10.97157 -10.95286 -10.83224 -10.69047 -10.51419 -10.09285 -9.72473 -9.47085 -9.18901 -8.97604 -8.67430 -8.57748 -8.11770 -6.38337 -6.12750 -3.81891 2.38600 2.77054 3.17025 3.29325 3.32093 3.33576 3.39822 3.81271 3.89125 4.29457 4.39797 4.43500 4.59024 4.71457 4.76991 4.86690 4.89183 4.98867 5.08283 5.11292 5.18367 5.21890 5.22370 5.26023 5.37660 5.47464 5.48408 5.64647 5.71839 5.76479 5.80540 5.92338 5.98208 6.02865 6.06067 6.19737 6.25584 6.30516 6.62502 6.87104 7.04688 7.16839 7.67881 7.95903 7.97251 8.43949 8.85516 9.32292 10.94689 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.003073 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.601745 B = 9108.555654 C =11515.333977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.741 5.741 3 C 0.506 3.494 4 O -0.515 6.515 5 C 0.043 3.957 6 N -0.663 5.663 7 C 0.083 3.917 8 H 0.083 0.917 9 C -0.147 4.147 10 C -0.115 4.115 11 C -0.118 4.118 12 C -0.131 4.131 13 C 0.163 3.837 14 H 0.087 0.913 15 N -0.719 5.719 16 C 0.535 3.465 17 O -0.523 6.523 18 C -0.152 4.152 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.400 0.600 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.354 0.646 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.396 0.604 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -25.129 17.216 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.395 5.395 3 C 0.292 3.708 4 O -0.389 6.389 5 C -0.090 4.090 6 N -0.295 5.295 7 C -0.027 4.027 8 H 0.101 0.899 9 C -0.187 4.187 10 C -0.153 4.153 11 C -0.156 4.156 12 C -0.170 4.170 13 C 0.057 3.943 14 H 0.105 0.895 15 N -0.371 5.371 16 C 0.322 3.678 17 O -0.398 6.398 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.233 0.767 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.229 0.771 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.254 -22.379 17.545 28.526 hybrid contribution -0.511 -2.485 -1.209 2.810 sum 1.743 -24.864 16.336 29.801 Atomic orbital electron populations 1.21524 0.79471 1.02088 1.02552 1.45793 1.07861 1.08654 1.77164 1.20687 0.90142 0.83749 0.76242 1.90785 1.69972 1.31032 1.47110 1.21819 0.91817 0.92658 1.02707 1.60182 1.06814 1.10657 1.51833 1.21902 0.86764 0.98468 0.95597 0.89871 1.22254 0.97058 1.02121 0.97223 1.21493 0.94685 0.98220 1.00917 1.21515 1.00572 0.97452 0.96091 1.21963 0.95248 1.03045 0.96750 1.20744 0.92682 0.97031 0.83839 0.89498 1.45758 1.68804 1.08319 1.14195 1.20195 0.76625 0.82821 0.88204 1.90679 1.49394 1.35860 1.63848 1.23512 1.03601 1.07995 0.95135 1.85349 1.86285 0.96325 1.15424 1.22844 1.51020 0.95462 0.98919 0.91075 1.24977 0.95191 0.94484 0.98940 1.70015 1.45783 0.97534 1.37083 0.86244 0.79307 0.77415 0.82637 1.19970 1.20863 1.19995 0.92025 0.90757 0.92289 0.76690 0.88045 0.92417 0.82549 0.91914 0.91168 0.91897 0.91897 0.91577 0.91666 0.90616 0.91927 0.77059 0.89575 0.89308 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 10.70 59.85 0.64 1.20 16 2 N -0.74 -4.80 5.71 -67.08 -0.38 -5.18 16 3 C 0.51 4.99 7.87 -10.99 -0.09 4.90 16 4 O -0.52 -7.83 16.20 5.55 0.09 -7.74 16 5 C 0.04 0.30 5.97 -4.98 -0.03 0.27 16 6 N -0.66 -6.51 5.71 -107.99 -0.62 -7.12 16 7 C 0.08 0.70 1.99 -67.71 -0.13 0.57 16 8 H 0.08 0.60 7.80 -51.93 -0.40 0.19 16 9 C -0.15 -1.01 5.17 -26.73 -0.14 -1.14 16 10 C -0.11 -0.77 5.92 -26.73 -0.16 -0.92 16 11 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 12 C -0.13 -1.44 5.49 -26.73 -0.15 -1.58 16 13 C 0.16 1.97 2.11 -67.93 -0.14 1.83 16 14 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 15 N -0.72 -10.32 4.91 -53.81 -0.26 -10.58 16 16 C 0.54 10.62 7.81 -10.98 -0.09 10.54 16 17 O -0.52 -12.38 15.53 5.56 0.09 -12.30 16 18 C -0.15 -3.28 6.16 36.01 0.22 -3.05 16 19 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 20 C -0.53 -15.79 9.50 30.94 0.29 -15.50 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.15 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -26.96 13.22 55.49 0.73 -26.22 16 24 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 1.19 8.83 -40.82 -0.36 0.83 16 32 H 0.10 0.56 8.05 -51.93 -0.42 0.14 16 33 H 0.06 0.27 7.44 -51.93 -0.39 -0.12 16 34 H 0.35 3.86 8.17 -39.29 -0.32 3.54 16 35 H 0.06 0.35 7.45 -51.93 -0.39 -0.04 16 36 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.40 4.78 8.60 -40.82 -0.35 4.43 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 46 H 0.27 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -38.54 390.57 -9.36 -47.91 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.64 Total: 4.28 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.02 Total: -2.03 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.53 Total: -49.11 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.54 -9.36 -47.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224902236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.727 kcal (2) G-P(sol) polarization free energy of solvation -38.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds