Wall clock time and date at job start Sat Apr 11 2020 02:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99963 * 2 1 4 4 O 1.21291 * 119.99941 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00111 * 179.97438 * 3 2 1 6 6 N 1.46900 * 109.47124 * 180.02562 * 5 3 2 7 7 C 1.46906 * 111.00315 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.46693 * 35.00071 * 7 6 5 9 9 C 1.52999 * 109.46904 * 275.00420 * 7 6 5 10 10 C 1.53006 * 109.46626 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47164 * 59.99702 * 10 9 7 12 12 C 1.53002 * 109.47415 * 300.00027 * 11 10 9 13 13 C 1.52996 * 109.46972 * 59.99860 * 12 11 10 14 14 H 1.09000 * 109.47054 * 60.00300 * 13 12 11 15 15 N 1.46500 * 109.46993 * 180.02562 * 13 12 11 16 16 C 1.34780 * 119.99887 * 274.99908 * 15 13 12 17 17 O 1.21279 * 120.00223 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99892 * 179.97438 * 16 15 13 19 19 S 1.80997 * 109.47431 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00464 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99370 * 0.02562 * 20 19 18 22 22 C 1.38788 * 120.00027 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00495 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00026 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47372 * 59.99621 * 24 22 20 26 26 H 1.48497 * 109.47496 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46872 * 299.99604 * 24 22 20 28 28 H 1.08998 * 109.46796 * 60.00353 * 1 2 3 29 29 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47352 * 299.99615 * 1 2 3 31 31 H 0.96997 * 120.00137 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.47065 * 60.00526 * 5 3 2 33 33 H 1.09001 * 109.47432 * 299.99859 * 5 3 2 34 34 H 1.00906 * 111.00324 * 56.04727 * 6 5 3 35 35 H 1.08993 * 109.47839 * 59.99803 * 9 7 6 36 36 H 1.09000 * 109.47160 * 299.99365 * 9 7 6 37 37 H 1.09001 * 109.46998 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.47050 * 299.99699 * 10 9 7 39 39 H 1.09000 * 109.47140 * 60.00051 * 11 10 9 40 40 H 1.09001 * 109.47230 * 179.97438 * 11 10 9 41 41 H 1.08992 * 109.46974 * 180.02562 * 12 11 10 42 42 H 1.08996 * 109.46550 * 300.00288 * 12 11 10 43 43 H 0.96999 * 120.00261 * 95.00272 * 15 13 12 44 44 H 1.09005 * 109.47348 * 300.00715 * 18 16 15 45 45 H 1.09002 * 109.47098 * 60.00223 * 18 16 15 46 46 H 0.96995 * 120.00082 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1355 2.5522 0.0011 7 6 5.6040 2.5915 0.0010 8 1 5.9897 1.7599 -0.5887 9 6 6.1172 2.4789 1.4380 10 6 7.6467 2.5192 1.4378 11 6 8.1221 3.8396 0.8285 12 6 7.6088 3.9523 -0.6085 13 6 6.0793 3.9120 -0.6083 14 1 5.6940 4.7438 -0.0186 15 7 5.5879 4.0192 -1.9842 16 6 5.4271 5.2320 -2.5498 17 8 5.6897 6.2346 -1.9198 18 6 4.9221 5.3424 -3.9653 19 16 4.8157 7.0874 -4.4337 20 6 4.2178 6.9257 -6.0833 21 1 4.0340 5.9452 -6.4972 22 6 3.9830 8.0582 -6.8505 23 7 4.2065 9.2532 -6.3457 24 14 3.3484 7.8867 -8.5990 25 1 2.0393 7.1857 -8.5841 26 1 3.1807 9.2346 -9.1992 27 1 4.3202 7.1034 -9.4037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6533 -0.8892 33 1 4.0089 0.6536 0.8908 34 1 3.7597 3.0684 0.7825 35 1 5.7790 1.5380 1.8720 36 1 5.7316 3.3104 2.0278 37 1 8.0124 2.4394 2.4616 38 1 8.0320 1.6874 0.8481 39 1 7.7367 4.6714 1.4182 40 1 9.2117 3.8685 0.8288 41 1 7.9478 4.8927 -1.0426 42 1 7.9941 3.1205 -1.1981 43 1 5.3782 3.2175 -2.4883 44 1 5.6087 4.8273 -4.6373 45 1 3.9347 4.8862 -4.0354 46 1 4.0420 10.0446 -6.8818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224902236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:30 Heat of formation + Delta-G solvation = -117.629444 kcal Electronic energy + Delta-G solvation = -25973.248860 eV Core-core repulsion = 22214.905812 eV Total energy + Delta-G solvation = -3758.343048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17272 -40.53661 -39.25184 -35.85075 -35.49377 -35.07983 -34.58104 -31.63755 -30.97157 -29.48389 -28.15563 -27.62174 -25.58909 -23.67134 -22.61060 -21.70438 -21.38214 -20.94713 -19.79244 -18.54281 -17.68332 -17.37353 -17.13786 -16.87935 -16.72529 -16.34054 -16.12120 -15.74405 -15.62608 -15.14564 -14.74146 -14.68278 -14.61831 -14.55361 -13.97884 -13.89549 -13.71236 -13.55976 -13.33988 -13.16648 -13.08898 -12.98457 -12.86168 -12.62237 -12.17417 -12.12480 -11.84352 -11.71823 -11.53864 -11.28325 -11.12753 -10.91990 -10.80543 -10.27262 -10.12029 -9.92001 -9.29134 -8.65887 -8.34004 -6.12277 1.27675 1.43743 1.47041 1.57776 1.67928 1.72077 2.20927 2.27672 2.38514 2.99473 3.16995 3.34365 3.69825 3.83285 3.93775 4.07413 4.10368 4.15897 4.24563 4.32401 4.39516 4.43635 4.46515 4.47667 4.51425 4.52726 4.55979 4.62047 4.86405 4.94160 4.94925 5.04091 5.16355 5.18289 5.25654 5.37043 5.40994 5.46480 5.49540 5.65253 6.00299 6.19758 6.27904 6.63218 6.64456 7.06445 7.34369 7.37749 8.75255 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.003073 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.601745 B = 9108.555654 C =11515.333977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.724 5.724 3 C 0.499 3.501 4 O -0.582 6.582 5 C 0.049 3.951 6 N -0.689 5.689 7 C 0.096 3.904 8 H 0.112 0.888 9 C -0.141 4.141 10 C -0.108 4.108 11 C -0.117 4.117 12 C -0.125 4.125 13 C 0.159 3.841 14 H 0.049 0.951 15 N -0.693 5.693 16 C 0.534 3.466 17 O -0.571 6.571 18 C -0.127 4.127 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.081 0.919 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.260 1.260 28 H 0.040 0.960 29 H 0.112 0.888 30 H 0.045 0.955 31 H 0.421 0.579 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.344 0.656 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.412 0.588 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -29.725 16.903 34.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.378 5.378 3 C 0.286 3.714 4 O -0.461 6.461 5 C -0.083 4.083 6 N -0.321 5.321 7 C -0.014 4.014 8 H 0.130 0.870 9 C -0.181 4.181 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.165 4.165 13 C 0.054 3.946 14 H 0.068 0.932 15 N -0.344 5.344 16 C 0.319 3.681 17 O -0.450 6.450 18 C -0.278 4.278 19 S 0.075 5.925 20 C -0.696 4.696 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.184 1.184 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.064 0.936 31 H 0.258 0.742 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.248 0.752 44 H 0.127 0.873 45 H 0.118 0.882 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.791 -27.106 17.249 32.250 hybrid contribution -0.674 -1.157 -1.013 1.679 sum 2.117 -28.264 16.237 32.664 Atomic orbital electron populations 1.21598 0.79516 1.04020 1.00901 1.45707 1.08009 1.08820 1.75277 1.21328 0.91517 0.83505 0.75070 1.90765 1.71398 1.33440 1.50465 1.21914 0.89531 0.91457 1.05392 1.60112 1.07451 1.12610 1.51880 1.21806 0.86287 0.96489 0.96821 0.87049 1.22219 0.97190 1.02945 0.95703 1.21471 0.94327 0.97017 1.01803 1.21511 1.01083 0.98617 0.94265 1.21888 0.94183 1.01770 0.98610 1.20972 0.93504 0.98378 0.81784 0.93225 1.45548 1.66757 1.06933 1.15129 1.19971 0.76675 0.83901 0.87512 1.90666 1.51852 1.37822 1.64639 1.23348 1.04949 1.02714 0.96815 1.85540 1.86713 1.03502 1.16703 1.23180 1.51302 0.96238 0.98887 0.90076 1.26159 0.95020 0.93837 1.04205 1.70187 1.46883 0.98582 1.39201 0.84985 0.79041 0.77841 0.75992 1.18814 1.20217 1.18404 0.94151 0.86963 0.93593 0.74249 0.85632 0.88852 0.83741 0.89165 0.92684 0.90558 0.89978 0.93291 0.90705 0.94601 0.89759 0.75195 0.87331 0.88238 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.70 127.77 1.37 2.33 16 2 N -0.72 -7.70 5.71 -484.51 -2.77 -10.47 16 3 C 0.50 9.09 7.87 87.66 0.69 9.78 16 4 O -0.58 -18.08 16.20 -3.06 -0.05 -18.13 16 5 C 0.05 0.52 5.97 85.56 0.51 1.03 16 6 N -0.69 -12.36 5.71 -495.58 -2.83 -15.18 16 7 C 0.10 1.37 1.99 44.91 0.09 1.46 16 8 H 0.11 1.03 7.80 -2.39 -0.02 1.01 16 9 C -0.14 -1.50 5.17 30.60 0.16 -1.34 16 10 C -0.11 -1.06 5.92 30.60 0.18 -0.88 16 11 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 12 C -0.13 -2.69 5.49 30.59 0.17 -2.52 16 13 C 0.16 3.79 2.11 44.99 0.10 3.89 16 14 H 0.05 1.58 7.58 -2.39 -0.02 1.57 16 15 N -0.69 -19.53 4.91 -442.54 -2.17 -21.70 16 16 C 0.53 21.76 7.81 87.66 0.68 22.45 16 17 O -0.57 -28.68 15.53 -3.03 -0.05 -28.72 16 18 C -0.13 -5.54 6.16 71.24 0.44 -5.10 16 19 S -0.15 -8.96 20.57 -56.49 -1.16 -10.12 16 20 C -0.55 -32.88 9.50 67.95 0.65 -32.23 16 21 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 22 C 0.01 0.73 5.49 84.85 0.47 1.20 16 23 N -0.91 -58.09 13.22 21.65 0.29 -57.80 16 24 Si 1.00 45.19 29.55 68.60 2.03 47.22 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 28 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.42 0.92 8.83 -92.71 -0.82 0.10 16 32 H 0.13 0.77 8.05 -2.39 -0.02 0.75 16 33 H 0.09 0.39 7.44 -2.39 -0.02 0.37 16 34 H 0.34 7.43 8.17 -89.69 -0.73 6.70 16 35 H 0.09 0.54 7.45 -2.39 -0.02 0.52 16 36 H 0.05 0.78 8.13 -2.39 -0.02 0.76 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.41 9.04 8.60 -92.71 -0.80 8.24 16 44 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 45 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 46 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -91.30 390.57 -2.38 -93.68 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -1.35 Total: 22.88 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.68 Total: -1.65 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -7.48 Total: -105.15 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -0.10 Total: -46.86 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.16 Total: -10.12 kcal Total: -91.30 -2.38 -93.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224902236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.949 kcal (2) G-P(sol) polarization free energy of solvation -91.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds