Wall clock time and date at job start Sat Apr 11 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86309 * 1 3 3 C 1.86300 * 109.46756 * 2 1 4 4 C 1.86299 * 109.47143 * 240.00377 * 2 1 3 5 5 C 1.89996 * 109.47003 * 120.00151 * 2 1 3 6 6 C 3.07403 * 109.47096 * 120.00081 * 2 1 3 7 7 C 4.50592 * 109.47084 * 120.00109 * 2 1 3 8 8 C 1.39584 * 120.08475 * 134.56958 * 7 6 5 9 9 C 1.37854 * 119.91367 * 180.02562 * 8 7 6 10 10 C 1.38864 * 120.08569 * 0.03313 * 9 8 7 11 11 O 1.35868 * 119.91283 * 179.97438 * 10 9 8 12 12 C 1.42902 * 116.99953 * 5.27619 * 11 10 9 13 13 H 1.09002 * 110.91531 * 38.51253 * 12 11 10 14 14 C 1.55158 * 111.00306 * 162.40614 * 12 11 10 15 15 C 1.54336 * 103.02013 * 153.38443 * 14 12 11 16 16 N 1.47022 * 107.26346 * 338.14384 * 15 14 12 17 17 C 1.36938 * 125.64440 * 178.84815 * 16 15 14 18 18 H 1.08009 * 119.99632 * 179.41915 * 17 16 15 19 19 C 1.38804 * 120.00262 * 359.69630 * 17 16 15 20 20 N 1.31620 * 119.99896 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47234 * 89.99534 * 21 19 17 23 23 H 1.48498 * 109.46980 * 209.99644 * 21 19 17 24 24 H 1.48502 * 109.46859 * 329.99399 * 21 19 17 25 25 C 1.47424 * 108.70347 * 358.58575 * 16 15 14 26 26 C 1.38855 * 120.17160 * 0.22687 * 10 9 8 27 27 C 1.37855 * 120.08664 * 359.48772 * 26 10 9 28 28 H 1.08994 * 109.47134 * 299.99720 * 1 2 3 29 29 H 1.09000 * 109.47026 * 60.00352 * 1 2 3 30 30 H 1.09003 * 109.46528 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46947 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47572 * 300.00033 * 3 2 1 33 33 H 1.09004 * 109.46942 * 60.00083 * 3 2 1 34 34 H 1.09008 * 109.46916 * 300.00005 * 4 2 1 35 35 H 1.08998 * 109.47273 * 59.99520 * 4 2 1 36 36 H 1.08993 * 109.47318 * 179.97438 * 4 2 1 37 37 H 1.07996 * 120.04258 * 0.02562 * 8 7 6 38 38 H 1.08000 * 119.95881 * 180.02562 * 9 8 7 39 39 H 1.08996 * 110.72539 * 271.94727 * 14 12 11 40 40 H 1.09003 * 110.71489 * 35.03964 * 14 12 11 41 41 H 1.09001 * 109.99013 * 218.66940 * 15 14 12 42 42 H 1.08997 * 109.77514 * 97.50011 * 15 14 12 43 43 H 0.97002 * 119.99851 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.36493 * 143.19527 * 25 16 15 45 45 H 1.08998 * 110.36840 * 265.40525 * 25 16 15 46 46 H 1.08000 * 119.95204 * 179.72831 * 26 10 9 47 47 H 1.08000 * 120.04597 * 180.27922 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8878 -1.4491 2.5099 7 6 3.3650 -2.1242 3.6790 8 6 4.6959 -2.5383 3.7536 9 6 5.1516 -3.1884 4.8806 10 6 4.2882 -3.4320 5.9406 11 8 4.7409 -4.0734 7.0495 12 6 6.1388 -4.3646 7.1053 13 1 6.7239 -3.5456 6.6869 14 6 6.5835 -4.6803 8.5579 15 6 7.8120 -5.5922 8.3550 16 7 7.7046 -6.1760 7.0099 17 6 8.6104 -7.0267 6.4346 18 1 8.4352 -7.4099 5.4401 19 6 9.7508 -7.4011 7.1316 20 7 9.9619 -6.9380 8.3455 21 14 10.9868 -8.5611 6.3465 22 1 12.0017 -7.7730 5.6021 23 1 11.6578 -9.3591 7.4040 24 1 10.2834 -9.4734 5.4093 25 6 6.4573 -5.6988 6.3856 26 6 2.9622 -3.0263 5.8680 27 6 2.5005 -2.3705 4.7468 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.5740 1.7565 0.0005 32 1 2.1207 2.2703 -0.8899 33 1 2.1206 2.2703 0.8900 34 1 2.1207 -1.9059 -1.5212 35 1 2.1207 -0.3643 -2.4111 36 1 3.5740 -0.8777 -1.5214 37 1 5.3678 -2.3498 2.9294 38 1 6.1813 -3.5088 4.9392 39 1 6.8612 -3.7666 9.0834 40 1 5.7966 -5.2089 9.0958 41 1 7.8157 -6.3844 9.1037 42 1 8.7256 -5.0027 8.4314 43 1 10.7587 -7.2000 8.8327 44 1 6.6077 -5.5283 5.3196 45 1 5.6541 -6.4184 6.5443 46 1 2.2927 -3.2215 6.6927 47 1 1.4702 -2.0513 4.6930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227432826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:35 Heat of formation + Delta-G solvation = 18.489972 kcal Electronic energy + Delta-G solvation = -23891.749695 eV Core-core repulsion = 20470.612067 eV Total energy + Delta-G solvation = -3421.137628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15677 -38.05528 -36.24050 -33.16715 -32.28292 -31.10295 -29.61319 -29.06955 -28.79878 -27.86680 -27.85084 -27.41334 -24.65053 -22.85542 -22.81883 -20.38467 -20.11556 -18.55180 -17.85487 -17.03961 -15.72261 -15.17652 -15.16905 -14.70492 -14.50694 -13.91790 -13.82834 -13.68535 -13.48810 -13.45695 -13.42160 -12.95270 -12.79504 -12.76778 -12.69167 -12.53923 -12.42664 -12.40695 -12.05878 -11.78614 -11.38761 -11.19661 -11.02440 -10.99045 -10.84644 -10.69064 -10.38567 -10.35461 -10.15207 -10.01626 -9.97441 -9.86617 -9.71597 -9.06405 -8.67130 -7.87427 -6.93186 -5.78160 -3.13018 0.98571 1.33375 2.12564 2.32891 2.33748 3.00302 3.13623 3.21903 3.35842 3.37669 3.42834 3.44964 4.03920 4.45012 4.81250 4.85711 4.91855 5.15866 5.23235 5.25283 5.26252 5.30056 5.30810 5.30990 5.32545 5.33231 5.40070 5.52653 5.54964 5.59572 5.72165 5.97524 5.98606 6.08330 6.10282 6.12116 6.21500 6.29322 6.34060 6.38212 6.46183 6.53885 6.59989 6.79324 7.46901 7.50639 7.60011 7.63564 7.75162 8.16807 9.13795 9.73366 10.37566 11.33589 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017268 B = 0.001968 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.073889 B =14227.211732 C =15386.194697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.144 2.856 3 C -0.452 4.452 4 C -0.452 4.452 5 C -0.425 4.425 6 C -0.113 4.113 7 C -0.057 4.057 8 C -0.051 4.051 9 C -0.207 4.207 10 C 0.155 3.845 11 O -0.303 6.303 12 C 0.064 3.936 13 H 0.081 0.919 14 C -0.134 4.134 15 C 0.178 3.822 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.118 3.882 26 C -0.160 4.160 27 C -0.057 4.057 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.044 0.956 45 H 0.030 0.970 46 H 0.134 0.866 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 16.114 -13.945 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.330 2.670 3 C -0.559 4.559 4 C -0.560 4.560 5 C -0.461 4.461 6 C -0.113 4.113 7 C -0.057 4.057 8 C -0.069 4.069 9 C -0.226 4.226 10 C 0.108 3.892 11 O -0.215 6.215 12 C 0.007 3.993 13 H 0.099 0.901 14 C -0.173 4.173 15 C 0.054 3.946 16 N -0.330 5.330 17 C -0.359 4.359 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.178 4.178 27 C -0.075 4.075 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.152 0.848 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.667 15.871 -13.589 27.362 hybrid contribution 1.041 -0.829 -0.134 1.337 sum -16.626 15.042 -13.723 26.287 Atomic orbital electron populations 1.26104 1.20277 1.04844 1.04633 0.76887 0.65795 0.64577 0.59729 1.26116 1.06723 1.18475 1.04618 1.26117 1.06739 1.08437 1.14689 1.35731 1.01732 1.03450 1.05137 1.21006 0.98380 0.97292 0.94622 1.16038 0.93976 1.03773 0.91951 1.20994 0.94003 0.94825 0.97120 1.21422 1.01254 1.05456 0.94459 1.19243 0.93123 0.90486 0.86306 1.86108 1.27278 1.70993 1.37102 1.23900 0.77479 0.98215 0.99709 0.90076 1.23027 1.00229 1.00826 0.93199 1.21217 0.92134 0.93917 0.87367 1.44345 1.20328 1.54519 1.13818 1.19056 0.98618 1.19252 0.98954 0.90291 1.24828 0.98422 1.00541 0.96566 1.69942 1.28059 1.47709 1.11199 0.86075 0.81170 0.80243 0.78007 1.21504 1.21579 1.20628 1.21977 0.90669 0.92305 0.95932 1.20340 0.93698 1.03835 0.99954 1.20926 0.99005 0.96080 0.91478 0.90977 0.90706 0.90940 0.90932 0.90719 0.90980 0.90926 0.90727 0.90921 0.85557 0.84195 0.91274 0.91094 0.93193 0.92958 0.93594 0.93823 0.95210 0.84782 0.85323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -2.23 8.65 101.05 0.87 -1.36 16 2 Si 1.14 5.82 14.26 -169.99 -2.42 3.40 16 3 C -0.45 -2.34 8.65 101.05 0.87 -1.47 16 4 C -0.45 -2.45 8.65 101.05 0.87 -1.58 16 5 C -0.43 -4.54 12.14 29.55 0.36 -4.18 16 6 C -0.11 -1.50 13.23 -38.84 -0.51 -2.02 16 7 C -0.06 -0.79 5.73 -106.97 -0.61 -1.41 16 8 C -0.05 -0.72 9.74 -39.22 -0.38 -1.10 16 9 C -0.21 -3.12 8.70 -39.49 -0.34 -3.46 16 10 C 0.16 2.41 6.64 -39.12 -0.26 2.15 16 11 O -0.30 -5.20 9.95 -19.33 -0.19 -5.39 16 12 C 0.06 1.17 2.82 -24.59 -0.07 1.10 16 13 H 0.08 1.43 6.61 -51.93 -0.34 1.09 16 14 C -0.13 -2.55 6.68 -24.89 -0.17 -2.71 16 15 C 0.18 4.28 5.38 -3.06 -0.02 4.27 16 16 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 17 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 18 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.77 10.31 55.49 0.57 -26.20 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.12 2.50 6.59 -2.54 -0.02 2.49 16 26 C -0.16 -2.15 9.97 -39.49 -0.39 -2.55 16 27 C -0.06 -0.72 9.74 -39.22 -0.38 -1.10 16 28 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 29 H 0.07 0.28 7.96 -51.93 -0.41 -0.14 16 30 H 0.07 0.38 7.96 -51.93 -0.41 -0.03 16 31 H 0.07 0.41 7.96 -51.93 -0.41 0.00 16 32 H 0.07 0.29 7.96 -51.93 -0.41 -0.12 16 33 H 0.07 0.39 7.96 -51.93 -0.41 -0.02 16 34 H 0.07 0.42 7.96 -51.92 -0.41 0.01 16 35 H 0.07 0.30 7.96 -51.93 -0.41 -0.11 16 36 H 0.07 0.43 7.96 -51.93 -0.41 0.01 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.14 2.14 5.28 -52.49 -0.28 1.86 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 1.32 7.52 -51.93 -0.39 0.93 16 42 H 0.05 1.36 7.37 -51.93 -0.38 0.98 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.04 0.89 7.23 -51.93 -0.38 0.52 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 47 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -32.18 398.30 -9.64 -41.82 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.57 Total: -0.80 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.43 Total: -19.80 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.00 Total: -42.17 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.19 Total: -5.39 kcal Atomic # 14 Polarization: 27.80 SS G_CDS: -7.45 Total: 20.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.18 -9.64 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227432826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.308 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds