Wall clock time and date at job start Sat Apr 11 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00052 * 2 1 4 4 C 1.46893 * 110.99795 * 123.95561 * 2 1 3 5 5 C 1.50696 * 109.47309 * 66.04875 * 4 2 1 6 6 C 1.38180 * 120.01225 * 260.22869 * 5 4 2 7 7 C 1.38434 * 120.02644 * 180.25139 * 6 5 4 8 8 F 1.35102 * 119.97004 * 179.76756 * 7 6 5 9 9 C 1.38475 * 120.06160 * 359.75105 * 7 6 5 10 10 C 1.38124 * 120.03077 * 0.02562 * 9 7 6 11 11 C 1.38684 * 120.01631 * 79.99542 * 5 4 2 12 12 O 1.35943 * 120.03157 * 0.02609 * 11 5 4 13 13 C 1.42897 * 117.00076 * 174.26451 * 12 11 5 14 14 H 1.09003 * 109.47055 * 324.32551 * 13 12 11 15 15 C 1.50700 * 109.47300 * 84.32532 * 13 12 11 16 16 H 1.08002 * 119.99747 * 240.00464 * 15 13 12 17 17 C 1.37875 * 119.99938 * 59.99738 * 15 13 12 18 18 N 1.31509 * 120.00122 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99658 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47155 * 90.00329 * 19 17 15 21 21 H 1.48505 * 109.46783 * 210.00099 * 19 17 15 22 22 H 1.48494 * 109.47363 * 329.99781 * 19 17 15 23 23 C 1.50699 * 109.47218 * 204.32388 * 13 12 11 24 24 C 1.38233 * 119.99969 * 324.72678 * 23 13 12 25 25 C 1.38232 * 120.00219 * 180.34366 * 24 23 13 26 26 C 1.38233 * 119.99871 * 359.88860 * 25 24 23 27 27 C 1.38234 * 120.00330 * 0.08271 * 26 25 24 28 28 C 1.38231 * 120.00352 * 144.99750 * 23 13 12 29 29 H 1.09001 * 109.46928 * 296.04954 * 1 2 3 30 30 H 1.09004 * 109.46832 * 56.04045 * 1 2 3 31 31 H 1.08990 * 109.47303 * 176.04236 * 1 2 3 32 32 H 1.08997 * 109.47037 * 183.95240 * 3 2 1 33 33 H 1.08995 * 109.47026 * 303.95854 * 3 2 1 34 34 H 1.09006 * 109.47051 * 63.95289 * 3 2 1 35 35 H 1.09000 * 109.47203 * 306.04060 * 4 2 1 36 36 H 1.09001 * 109.47216 * 186.04680 * 4 2 1 37 37 H 1.07994 * 119.98645 * 0.02562 * 6 5 4 38 38 H 1.08003 * 119.98357 * 180.02562 * 9 7 6 39 39 H 1.07997 * 120.01686 * 179.97438 * 10 9 7 40 40 H 0.97002 * 120.00315 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.00275 * 0.27062 * 24 23 13 42 42 H 1.08004 * 120.00392 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99791 * 180.11234 * 26 25 24 44 44 H 1.07999 * 120.00433 * 179.97438 * 27 26 25 45 45 H 1.08005 * 119.99996 * 359.70631 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 0.5607 -2.7491 1.6595 7 6 0.2344 -4.0863 1.5124 8 9 -0.8153 -4.6032 2.1880 9 6 0.9825 -4.8947 0.6731 10 6 2.0560 -4.3677 -0.0181 11 6 2.3841 -3.0277 0.1281 12 8 3.4405 -2.5078 -0.5514 13 6 4.2409 -3.4215 -1.3040 14 1 4.3049 -4.3712 -0.7728 15 6 3.6130 -3.6435 -2.6559 16 1 3.3086 -4.6361 -2.9535 17 6 3.4272 -2.5795 -3.5128 18 7 3.7983 -1.3709 -3.1506 19 14 2.6483 -2.8546 -5.1883 20 1 1.1750 -2.7039 -5.0800 21 1 3.1787 -1.8557 -6.1507 22 1 2.9722 -4.2227 -5.6661 23 6 5.6242 -2.8502 -1.4804 24 6 5.7940 -1.4879 -1.6417 25 6 7.0622 -0.9646 -1.8106 26 6 8.1609 -1.8034 -1.8158 27 6 7.9913 -3.1657 -1.6538 28 6 6.7229 -3.6891 -1.4864 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3872 2.0627 36 1 3.0797 -0.6611 1.1756 37 1 -0.0238 -2.1197 2.3141 38 1 0.7265 -5.9377 0.5589 39 1 2.6395 -4.9984 -0.6723 40 1 3.6673 -0.6222 -3.7533 41 1 4.9356 -0.8324 -1.6371 42 1 7.1949 0.0999 -1.9362 43 1 9.1520 -1.3943 -1.9459 44 1 8.8497 -3.8211 -1.6583 45 1 6.5903 -4.7535 -1.3599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229859144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:47 Heat of formation + Delta-G solvation = -13.020494 kcal Electronic energy + Delta-G solvation = -28975.281314 eV Core-core repulsion = 25066.110538 eV Total energy + Delta-G solvation = -3909.170777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.31747 -39.54183 -38.20315 -36.84317 -35.96562 -33.04642 -31.38212 -30.62733 -29.74807 -28.71300 -27.18941 -27.01863 -26.24507 -23.46309 -22.32901 -21.85677 -21.42110 -20.43717 -20.01997 -17.53282 -16.69292 -16.38630 -16.05789 -15.56953 -15.27790 -14.95869 -14.82376 -14.58571 -14.49146 -14.11323 -13.95336 -13.58676 -13.44978 -13.21247 -12.63829 -12.47237 -12.37146 -12.13707 -11.99818 -11.94510 -11.60397 -11.46907 -11.43607 -11.27580 -11.12703 -11.00344 -10.93343 -10.55170 -10.42912 -10.26944 -10.07035 -9.36899 -9.19571 -8.79235 -8.51474 -7.86687 -7.79775 -7.55842 -7.10437 -6.04129 -4.39192 1.69383 1.94796 2.38583 2.55312 3.22606 3.29589 3.31569 4.09629 4.27880 4.39845 4.60815 4.84797 4.94556 5.15179 5.19983 5.25362 5.46146 5.54497 5.62922 5.73489 5.75805 5.82499 5.85885 5.89966 5.94338 5.99673 6.07372 6.24406 6.26688 6.28634 6.30003 6.41759 6.45891 6.58170 6.68490 6.79135 6.79646 6.99384 7.08180 7.21120 7.37489 7.46444 7.48873 7.51023 7.57490 7.73709 7.88484 7.96627 8.22044 8.47825 8.83564 9.37034 10.78834 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.004919 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.218221 B = 5691.274828 C = 5744.040016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.520 5.520 3 C 0.034 3.966 4 C 0.117 3.883 5 C -0.117 4.117 6 C -0.111 4.111 7 C 0.019 3.981 8 F -0.156 7.156 9 C -0.112 4.112 10 C -0.184 4.184 11 C 0.194 3.806 12 O -0.274 6.274 13 C 0.238 3.762 14 H 0.032 0.968 15 C -0.549 4.549 16 H 0.065 0.935 17 C 0.091 3.909 18 N -0.830 5.830 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.043 4.043 24 C -0.044 4.044 25 C -0.153 4.153 26 C -0.143 4.143 27 C -0.149 4.149 28 C -0.126 4.126 29 H 0.014 0.986 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.013 0.987 35 H 0.029 0.971 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.265 0.735 41 H 0.168 0.832 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 1.748 6.905 7.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.244 5.244 3 C -0.114 4.114 4 C -0.011 4.011 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.000 4.000 8 F -0.135 7.135 9 C -0.131 4.131 10 C -0.203 4.203 11 C 0.144 3.856 12 O -0.184 6.184 13 C 0.185 3.815 14 H 0.049 0.951 15 C -0.585 4.585 16 H 0.083 0.917 17 C -0.118 4.118 18 N -0.463 5.463 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.044 4.044 24 C -0.063 4.063 25 C -0.171 4.171 26 C -0.162 4.162 27 C -0.167 4.167 28 C -0.144 4.144 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.031 0.969 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.185 0.815 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.968 1.923 6.388 6.741 hybrid contribution -0.883 -0.135 -0.537 1.042 sum -1.850 1.788 5.851 6.392 Atomic orbital electron populations 1.22371 0.88263 1.02268 0.99205 1.61819 1.06858 1.12925 1.42751 1.22293 1.01315 0.88661 0.99159 1.20709 1.00782 0.89156 0.90408 1.18808 0.97168 0.95591 1.00254 1.20617 0.97609 0.93452 1.01329 1.17328 0.89855 0.92748 1.00037 1.91402 1.55641 1.87396 1.79077 1.20851 0.95858 0.99604 0.96795 1.21301 0.99877 0.95848 1.03235 1.18830 0.88350 0.90391 0.88045 1.86348 1.35642 1.38719 1.57692 1.18997 0.85346 0.86472 0.90722 0.95056 1.21273 1.42101 0.95084 1.00082 0.91720 1.24929 0.93800 0.95054 0.97979 1.69765 1.41881 0.99110 1.35567 0.86595 0.79780 0.78156 0.83529 1.20340 1.21025 1.19902 1.19767 0.93272 0.93999 0.97363 1.21904 0.96761 0.96204 0.91419 1.21152 0.93641 0.98545 1.03782 1.20846 0.97757 0.93948 1.03611 1.20695 0.96323 0.95023 1.04688 1.20749 0.92392 0.98689 1.02580 0.96712 0.92006 0.91299 0.91015 0.91847 0.96888 0.95301 0.89477 0.85825 0.85761 0.83962 0.92476 0.81549 0.87982 0.88233 0.87916 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.27 60.07 0.56 0.97 16 2 N -0.52 -8.85 5.01 -252.73 -1.27 -10.12 16 3 C 0.03 0.49 9.57 60.07 0.57 1.07 16 4 C 0.12 1.92 4.75 -4.98 -0.02 1.90 16 5 C -0.12 -2.09 4.59 -104.48 -0.48 -2.57 16 6 C -0.11 -1.81 8.69 -39.53 -0.34 -2.15 16 7 C 0.02 0.33 7.30 -39.42 -0.29 0.04 16 8 F -0.16 -2.59 17.27 2.25 0.04 -2.55 16 9 C -0.11 -1.90 10.02 -39.54 -0.40 -2.30 16 10 C -0.18 -3.48 8.69 -39.44 -0.34 -3.83 16 11 C 0.19 3.93 6.56 -39.23 -0.26 3.67 16 12 O -0.27 -6.09 7.58 -19.56 -0.15 -6.24 16 13 C 0.24 5.38 2.11 -29.04 -0.06 5.32 16 14 H 0.03 0.68 6.26 -51.93 -0.33 0.35 16 15 C -0.55 -13.54 7.93 -34.44 -0.27 -13.81 16 16 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 17 C 0.09 2.27 5.24 -17.82 -0.09 2.17 16 18 N -0.83 -20.64 8.51 55.43 0.47 -20.17 16 19 Si 0.89 20.19 29.54 -169.99 -5.02 15.16 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 C -0.04 -0.97 4.80 -104.63 -0.50 -1.47 16 24 C -0.04 -0.97 7.45 -39.59 -0.29 -1.27 16 25 C -0.15 -3.01 10.05 -39.59 -0.40 -3.41 16 26 C -0.14 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 28 C -0.13 -2.54 9.68 -39.58 -0.38 -2.92 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.07 1.13 6.64 -51.93 -0.34 0.78 16 32 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 33 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.03 0.42 7.99 -51.93 -0.41 0.00 16 36 H 0.09 1.51 7.77 -51.93 -0.40 1.11 16 37 H 0.12 1.75 8.04 -52.49 -0.42 1.33 16 38 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.14 2.73 5.67 -52.49 -0.30 2.43 16 40 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 41 H 0.17 3.97 5.52 -52.49 -0.29 3.68 16 42 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 43 H 0.10 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 45 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -25.85 370.97 -10.40 -36.25 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.27 Total: 6.81 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -3.80 Total: -24.74 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: -0.79 Total: -30.29 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.15 Total: -6.24 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -25.85 -10.40 -36.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229859144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.230 kcal (2) G-P(sol) polarization free energy of solvation -25.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds