Wall clock time and date at job start Sat Apr 11 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 111.00052 * 2 1 4 4 C 1.46893 * 110.99795 * 123.95561 * 2 1 3 5 5 C 1.50696 * 109.47309 * 66.04875 * 4 2 1 6 6 C 1.38180 * 120.01225 * 260.22869 * 5 4 2 7 7 C 1.38434 * 120.02644 * 180.25139 * 6 5 4 8 8 F 1.35102 * 119.97004 * 179.76756 * 7 6 5 9 9 C 1.38475 * 120.06160 * 359.75105 * 7 6 5 10 10 C 1.38124 * 120.03077 * 0.02562 * 9 7 6 11 11 C 1.38684 * 120.01631 * 79.99542 * 5 4 2 12 12 O 1.35943 * 120.03157 * 0.02609 * 11 5 4 13 13 C 1.42897 * 117.00076 * 174.26451 * 12 11 5 14 14 H 1.09003 * 109.47055 * 324.32551 * 13 12 11 15 15 C 1.50700 * 109.47300 * 84.32532 * 13 12 11 16 16 H 1.08002 * 119.99747 * 240.00464 * 15 13 12 17 17 C 1.37875 * 119.99938 * 59.99738 * 15 13 12 18 18 N 1.31509 * 120.00122 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99658 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47155 * 90.00329 * 19 17 15 21 21 H 1.48505 * 109.46783 * 210.00099 * 19 17 15 22 22 H 1.48494 * 109.47363 * 329.99781 * 19 17 15 23 23 C 1.50699 * 109.47218 * 204.32388 * 13 12 11 24 24 C 1.38233 * 119.99969 * 324.72678 * 23 13 12 25 25 C 1.38232 * 120.00219 * 180.34366 * 24 23 13 26 26 C 1.38233 * 119.99871 * 359.88860 * 25 24 23 27 27 C 1.38234 * 120.00330 * 0.08271 * 26 25 24 28 28 C 1.38231 * 120.00352 * 144.99750 * 23 13 12 29 29 H 1.09001 * 109.46928 * 296.04954 * 1 2 3 30 30 H 1.09004 * 109.46832 * 56.04045 * 1 2 3 31 31 H 1.08990 * 109.47303 * 176.04236 * 1 2 3 32 32 H 1.08997 * 109.47037 * 183.95240 * 3 2 1 33 33 H 1.08995 * 109.47026 * 303.95854 * 3 2 1 34 34 H 1.09006 * 109.47051 * 63.95289 * 3 2 1 35 35 H 1.09000 * 109.47203 * 306.04060 * 4 2 1 36 36 H 1.09001 * 109.47216 * 186.04680 * 4 2 1 37 37 H 1.07994 * 119.98645 * 0.02562 * 6 5 4 38 38 H 1.08003 * 119.98357 * 180.02562 * 9 7 6 39 39 H 1.07997 * 120.01686 * 179.97438 * 10 9 7 40 40 H 0.97002 * 120.00315 * 180.02562 * 18 17 15 41 41 H 1.07999 * 120.00275 * 0.27062 * 24 23 13 42 42 H 1.08004 * 120.00392 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99791 * 180.11234 * 26 25 24 44 44 H 1.07999 * 120.00433 * 179.97438 * 27 26 25 45 45 H 1.08005 * 119.99996 * 359.70631 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6369 -2.2204 0.9728 6 6 0.5607 -2.7491 1.6595 7 6 0.2344 -4.0863 1.5124 8 9 -0.8153 -4.6032 2.1880 9 6 0.9825 -4.8947 0.6731 10 6 2.0560 -4.3677 -0.0181 11 6 2.3841 -3.0277 0.1281 12 8 3.4405 -2.5078 -0.5514 13 6 4.2409 -3.4215 -1.3040 14 1 4.3049 -4.3712 -0.7728 15 6 3.6130 -3.6435 -2.6559 16 1 3.3086 -4.6361 -2.9535 17 6 3.4272 -2.5795 -3.5128 18 7 3.7983 -1.3709 -3.1506 19 14 2.6483 -2.8546 -5.1883 20 1 1.1750 -2.7039 -5.0800 21 1 3.1787 -1.8557 -6.1507 22 1 2.9722 -4.2227 -5.6661 23 6 5.6242 -2.8502 -1.4804 24 6 5.7940 -1.4879 -1.6417 25 6 7.0622 -0.9646 -1.8106 26 6 8.1609 -1.8034 -1.8158 27 6 7.9913 -3.1657 -1.6538 28 6 6.7229 -3.6891 -1.4864 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8524 34 1 1.7044 1.8724 0.9233 35 1 1.5611 -0.3872 2.0627 36 1 3.0797 -0.6611 1.1756 37 1 -0.0238 -2.1197 2.3141 38 1 0.7265 -5.9377 0.5589 39 1 2.6395 -4.9984 -0.6723 40 1 3.6673 -0.6222 -3.7533 41 1 4.9356 -0.8324 -1.6371 42 1 7.1949 0.0999 -1.9362 43 1 9.1520 -1.3943 -1.9459 44 1 8.8497 -3.8211 -1.6583 45 1 6.5903 -4.7535 -1.3599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229859144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:47 Heat of formation + Delta-G solvation = -23.913829 kcal Electronic energy + Delta-G solvation = -28975.753685 eV Core-core repulsion = 25066.110538 eV Total energy + Delta-G solvation = -3909.643147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.67058 -41.02431 -39.71372 -38.23689 -37.38291 -34.81999 -32.79445 -32.21168 -31.29024 -30.13777 -28.76220 -28.35111 -27.56404 -25.17399 -23.65485 -23.33158 -22.91981 -21.84098 -21.54463 -19.17482 -18.14112 -17.84243 -17.64337 -17.04018 -16.80006 -16.56067 -16.12349 -15.84963 -15.82208 -15.57465 -15.47724 -15.22927 -14.94122 -14.66975 -14.05959 -14.00623 -13.70846 -13.69008 -13.43652 -13.21994 -13.11661 -13.03128 -12.83752 -12.74767 -12.60210 -12.49615 -12.36037 -12.18117 -12.06579 -11.74698 -11.61220 -11.01792 -10.85387 -10.66182 -9.88833 -9.41371 -9.16802 -9.00648 -8.60916 -7.87464 -6.28795 0.31167 0.51752 0.83108 1.01547 1.39464 1.43359 1.48415 2.41346 2.70583 2.83733 3.30800 3.33092 3.38370 3.49665 3.84956 3.91802 4.18475 4.32842 4.33941 4.39831 4.41973 4.47778 4.51691 4.57621 4.61551 4.66104 4.77715 4.79839 4.82075 4.91534 5.03294 5.06154 5.11291 5.13827 5.23552 5.28133 5.36230 5.46776 5.65697 5.66821 5.70923 5.89631 6.01176 6.02599 6.17078 6.26635 6.32213 6.38194 6.55617 6.69302 7.16205 7.48868 8.90189 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.004919 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.218221 B = 5691.274828 C = 5744.040016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.552 5.552 3 C 0.039 3.961 4 C 0.122 3.878 5 C -0.118 4.118 6 C -0.102 4.102 7 C 0.021 3.979 8 F -0.151 7.151 9 C -0.110 4.110 10 C -0.196 4.196 11 C 0.161 3.839 12 O -0.287 6.287 13 C 0.243 3.757 14 H 0.030 0.970 15 C -0.563 4.563 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.836 5.836 19 Si 0.935 3.065 20 H -0.284 1.284 21 H -0.284 1.284 22 H -0.275 1.275 23 C -0.069 4.069 24 C -0.061 4.061 25 C -0.161 4.161 26 C -0.139 4.139 27 C -0.145 4.145 28 C -0.139 4.139 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.132 0.868 40 H 0.260 0.740 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.959 2.048 7.770 8.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.276 5.276 3 C -0.109 4.109 4 C -0.005 4.005 5 C -0.119 4.119 6 C -0.121 4.121 7 C 0.002 3.998 8 F -0.130 7.130 9 C -0.129 4.129 10 C -0.215 4.215 11 C 0.112 3.888 12 O -0.198 6.198 13 C 0.189 3.811 14 H 0.048 0.952 15 C -0.600 4.600 16 H 0.072 0.928 17 C -0.151 4.151 18 N -0.470 5.470 19 Si 0.762 3.238 20 H -0.210 1.210 21 H -0.209 1.209 22 H -0.200 1.200 23 C -0.070 4.070 24 C -0.080 4.080 25 C -0.179 4.179 26 C -0.157 4.157 27 C -0.163 4.163 28 C -0.157 4.157 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.165 0.835 39 H 0.150 0.850 40 H 0.070 0.930 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.735 2.223 7.265 7.632 hybrid contribution -0.970 -0.254 -0.718 1.233 sum -1.705 1.969 6.547 7.046 Atomic orbital electron populations 1.22313 0.87205 1.01538 1.00550 1.61744 1.08079 1.14266 1.43537 1.22231 1.00392 0.87814 1.00425 1.20632 0.99935 0.88447 0.91457 1.19028 0.97073 0.96216 0.99631 1.20846 0.96900 0.93534 1.00797 1.17421 0.89700 0.93009 0.99662 1.91420 1.55312 1.87357 1.78873 1.21033 0.94973 1.00810 0.96125 1.21268 1.00763 0.95553 1.03903 1.19238 0.88804 0.91437 0.89327 1.86296 1.36498 1.38675 1.58364 1.18859 0.85768 0.86678 0.89815 0.95204 1.21409 1.42658 0.94549 1.01358 0.92816 1.25407 0.94495 0.95241 0.99909 1.69947 1.42327 0.99052 1.35625 0.85942 0.78680 0.77830 0.81367 1.20973 1.20912 1.19952 1.19914 0.93677 0.94578 0.98838 1.21708 0.97201 0.95999 0.93129 1.21385 0.93254 0.99838 1.03415 1.21245 0.98833 0.93802 1.01829 1.21107 0.96563 0.95756 1.02902 1.21005 0.92806 0.99189 1.02732 0.94314 0.91764 0.92862 0.92398 0.91600 0.94550 0.92683 0.91227 0.83025 0.83531 0.85045 0.93012 0.83948 0.86313 0.84674 0.84482 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.27 127.69 1.18 2.11 16 2 N -0.55 -18.57 5.01 -953.49 -4.78 -23.35 16 3 C 0.04 1.12 9.57 127.69 1.22 2.34 16 4 C 0.12 3.97 4.75 85.56 0.41 4.38 16 5 C -0.12 -4.19 4.59 -19.77 -0.09 -4.28 16 6 C -0.10 -3.14 8.69 22.30 0.19 -2.95 16 7 C 0.02 0.69 7.30 22.37 0.16 0.85 16 8 F -0.15 -4.65 17.27 44.97 0.78 -3.87 16 9 C -0.11 -3.68 10.02 22.30 0.22 -3.46 16 10 C -0.20 -7.61 8.69 22.36 0.19 -7.41 16 11 C 0.16 6.69 6.56 22.49 0.15 6.84 16 12 O -0.29 -13.33 7.58 -92.91 -0.70 -14.03 16 13 C 0.24 11.43 2.11 29.10 0.06 11.49 16 14 H 0.03 1.36 6.26 -2.39 -0.01 1.34 16 15 C -0.56 -28.77 7.93 25.60 0.20 -28.56 16 16 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 17 C 0.06 2.89 5.24 84.65 0.44 3.33 16 18 N -0.84 -42.91 8.51 21.45 0.18 -42.73 16 19 Si 0.93 42.26 29.54 68.60 2.03 44.28 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 C -0.07 -3.17 4.80 -19.87 -0.10 -3.26 16 24 C -0.06 -2.77 7.45 22.27 0.17 -2.61 16 25 C -0.16 -6.22 10.05 22.27 0.22 -5.99 16 26 C -0.14 -4.74 10.05 22.27 0.22 -4.52 16 27 C -0.15 -5.01 10.05 22.27 0.22 -4.79 16 28 C -0.14 -5.56 9.68 22.27 0.22 -5.35 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.79 8.12 -2.38 -0.02 1.77 16 31 H 0.05 1.68 6.64 -2.39 -0.02 1.67 16 32 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 33 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 34 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 1.47 7.99 -2.39 -0.02 1.45 16 36 H 0.07 2.48 7.77 -2.39 -0.02 2.46 16 37 H 0.15 3.80 8.04 -2.91 -0.02 3.78 16 38 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.13 5.30 5.67 -2.91 -0.02 5.28 16 40 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16 41 H 0.14 7.12 5.52 -2.91 -0.02 7.10 16 42 H 0.12 4.07 8.06 -2.91 -0.02 4.04 16 43 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 45 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -56.32 370.97 3.80 -52.51 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.99 Total: 29.02 kcal Atomic # 6 Polarization: -47.15 SS G_CDS: 5.31 Total: -41.84 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -4.59 Total: -66.08 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.70 Total: -14.03 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -56.32 3.80 -52.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229859144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.599 kcal (2) G-P(sol) polarization free energy of solvation -56.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds