Wall clock time and date at job start Sat Apr 11 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99873 * 2 1 4 4 H 1.48504 * 109.46820 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46671 * 299.99932 * 3 2 1 6 6 H 1.48489 * 109.47369 * 60.00030 * 3 2 1 7 7 C 1.37875 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00219 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.46961 * 110.99875 * 170.00012 * 10 9 7 12 12 C 1.53044 * 109.36532 * 183.18867 * 11 10 9 13 13 N 1.46958 * 109.36528 * 301.60296 * 12 11 10 14 14 C 1.46904 * 110.99996 * 183.19025 * 13 12 11 15 15 C 1.50704 * 109.47160 * 164.21469 * 14 13 12 16 16 C 1.36603 * 120.92567 * 105.24496 * 15 14 13 17 17 C 1.39289 * 119.93217 * 179.85356 * 16 15 14 18 18 N 1.31104 * 121.74417 * 0.39456 * 17 16 15 19 19 C 1.33628 * 121.32072 * 359.82200 * 18 17 16 20 20 C 1.40828 * 121.07723 * 179.97438 * 19 18 17 21 21 F 1.35094 * 120.15297 * 0.04991 * 20 19 18 22 22 C 1.36282 * 119.69281 * 180.02562 * 20 19 18 23 23 C 1.39323 * 121.04366 * 0.02562 * 22 20 19 24 24 C 1.36137 * 120.90461 * 359.97438 * 23 22 20 25 25 C 1.40450 * 119.66814 * 0.02562 * 24 23 22 26 26 C 1.46951 * 110.88280 * 59.31691 * 13 12 11 27 27 C 1.46954 * 111.00359 * 293.80002 * 10 9 7 28 28 H 0.97001 * 120.00320 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46972 * 60.00342 * 9 7 2 30 30 H 1.08992 * 109.47315 * 300.00313 * 9 7 2 31 31 H 1.08999 * 109.48491 * 63.22139 * 11 10 9 32 32 H 1.09000 * 109.48766 * 303.16266 * 11 10 9 33 33 H 1.08997 * 109.49046 * 181.63578 * 12 11 10 34 34 H 1.09005 * 109.48901 * 61.56700 * 12 11 10 35 35 H 1.08999 * 109.47273 * 44.21517 * 14 13 12 36 36 H 1.09003 * 109.47105 * 284.21277 * 14 13 12 37 37 H 1.08001 * 120.03391 * 0.02783 * 16 15 14 38 38 H 1.08003 * 119.13071 * 180.19827 * 17 16 15 39 39 H 1.08000 * 119.47493 * 180.02562 * 22 20 19 40 40 H 1.07997 * 119.54573 * 180.02562 * 23 22 20 41 41 H 1.08009 * 120.16433 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.48939 * 60.65065 * 26 13 12 43 43 H 1.09004 * 109.48730 * 180.71376 * 26 13 12 44 44 H 1.09005 * 109.48803 * 296.78139 * 27 10 9 45 45 H 1.09001 * 109.48716 * 56.82303 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5211 -4.8941 0.2364 12 6 2.5566 -6.0189 0.3068 13 7 3.3187 -6.0588 -0.9491 14 6 4.2733 -7.1754 -0.9503 15 6 4.7493 -7.4278 -2.3577 16 6 6.0001 -7.0482 -2.7545 17 6 6.4199 -7.2944 -4.0596 18 7 5.6406 -7.8806 -4.9359 19 6 4.4045 -8.2728 -4.6134 20 6 3.5714 -8.9015 -5.5590 21 9 4.0156 -9.1194 -6.8161 22 6 2.3154 -9.2895 -5.1998 23 6 1.8385 -9.0739 -3.9086 24 6 2.6152 -8.4692 -2.9682 25 6 3.9153 -8.0556 -3.3016 26 6 4.0032 -4.7804 -1.1873 27 6 2.9677 -3.6557 -1.2576 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 0.8249 -5.0912 -0.5788 32 1 0.9741 -4.8438 1.1779 33 1 2.0488 -6.9720 0.4544 34 1 3.2364 -5.8358 1.1390 35 1 3.7854 -8.0710 -0.5657 36 1 5.1253 -6.9258 -0.3179 37 1 6.6639 -6.5601 -2.0562 38 1 7.4126 -6.9917 -4.3585 39 1 1.6797 -9.7717 -5.9276 40 1 0.8392 -9.3916 -3.6500 41 1 2.2332 -8.3077 -1.9709 42 1 4.6995 -4.5833 -0.3721 43 1 4.5501 -4.8307 -2.1288 44 1 2.2879 -3.8388 -2.0898 45 1 3.4752 -2.7024 -1.4055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232208941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:54 Heat of formation + Delta-G solvation = 25.068371 kcal Electronic energy + Delta-G solvation = -27729.359569 eV Core-core repulsion = 23854.133201 eV Total energy + Delta-G solvation = -3875.226368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.98364 -41.11398 -38.82513 -37.25487 -35.75076 -33.53643 -32.30615 -30.93392 -30.54883 -29.98584 -28.57335 -26.36571 -24.49027 -24.07849 -23.57634 -23.03417 -21.51623 -20.94076 -19.28045 -18.69814 -17.79629 -17.19254 -16.35898 -16.09608 -15.97641 -15.79128 -15.27739 -14.91449 -14.80516 -14.55498 -14.30552 -14.21189 -14.03403 -13.66423 -13.60530 -13.26904 -13.05442 -12.57125 -12.37864 -12.18136 -12.07163 -11.88852 -11.76286 -11.41961 -11.20045 -10.94727 -10.80333 -10.68488 -10.52217 -10.43586 -10.21992 -9.82748 -9.72077 -9.20235 -9.09923 -8.47731 -8.38432 -8.22355 -7.28276 -6.05447 -4.06982 0.10067 0.51648 1.64486 2.64773 3.28931 3.36461 3.40713 3.67692 3.78015 3.99247 4.06931 4.39339 4.39881 4.45124 4.60747 4.65460 4.86523 4.90127 4.98309 5.05784 5.14580 5.24497 5.30394 5.34982 5.41603 5.46242 5.62905 5.64741 5.72658 5.76698 5.81788 5.88106 5.93775 5.98467 6.10855 6.19509 6.29189 6.35573 6.52187 6.58978 6.63939 7.03834 7.06028 7.28971 7.32814 7.61857 7.76784 8.04983 8.16018 8.51213 9.00668 9.57523 11.05463 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002765 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.130373 B =10125.698571 C =10280.459757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.056 3.944 12 C 0.061 3.939 13 N -0.533 5.533 14 C 0.087 3.913 15 C -0.006 4.006 16 C -0.168 4.168 17 C 0.135 3.865 18 N -0.471 5.471 19 C 0.096 3.904 20 C 0.117 3.883 21 F -0.126 7.126 22 C -0.137 4.137 23 C -0.101 4.101 24 C -0.082 4.082 25 C -0.062 4.062 26 C 0.058 3.942 27 C 0.069 3.931 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -20.671 -4.920 22.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.258 5.258 14 C -0.040 4.040 15 C -0.015 4.015 16 C -0.188 4.188 17 C -0.037 4.037 18 N -0.179 5.179 19 C -0.026 4.026 20 C 0.097 3.903 21 F -0.105 7.105 22 C -0.158 4.158 23 C -0.119 4.119 24 C -0.100 4.100 25 C -0.065 4.065 26 C -0.070 4.070 27 C -0.060 4.060 28 H 0.070 0.930 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.157 0.843 38 H 0.179 0.821 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.303 -20.743 -5.851 23.096 hybrid contribution 0.161 1.187 0.533 1.311 sum 8.463 -19.555 -5.318 21.962 Atomic orbital electron populations 1.69965 1.06065 1.26691 1.51028 1.24991 0.94860 0.99328 0.95430 0.86457 0.80060 0.83469 0.77533 1.19674 1.21089 1.21004 1.21180 0.93460 0.89947 1.50018 0.91899 1.19700 0.90020 0.87284 0.96115 1.62296 1.28200 1.02742 1.33100 1.22060 0.94671 0.89959 1.00581 1.22199 0.96099 0.98763 0.89563 1.62187 1.25210 1.03051 1.35332 1.21055 0.95902 0.95982 0.91078 1.20077 0.92717 0.93122 0.95600 1.21890 0.97056 1.01804 0.98072 1.22928 0.98956 0.92678 0.89123 1.67991 1.03428 1.10831 1.35659 1.18793 0.92141 0.99805 0.91893 1.17109 0.92845 1.00849 0.79511 1.91508 1.89711 1.92386 1.36874 1.20894 0.94302 1.02184 0.98412 1.20720 1.00448 0.98772 0.92006 1.21120 0.92133 0.96010 1.00777 1.18439 0.95597 0.99519 0.92906 1.22286 0.96248 0.88316 1.00131 1.21966 0.95415 0.97333 0.91298 0.92958 0.99077 0.95211 0.95089 0.90889 0.91063 0.93987 0.89345 0.92908 0.84285 0.82082 0.84233 0.84588 0.84123 0.94040 0.91334 0.95371 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.06 8.47 -34.44 -0.29 -14.35 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16 10 N -0.54 -11.25 4.70 -235.92 -1.11 -12.36 16 11 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 12 C 0.06 0.81 5.58 -3.77 -0.02 0.79 16 13 N -0.53 -6.87 4.52 -235.91 -1.07 -7.94 16 14 C 0.09 0.87 4.31 -4.97 -0.02 0.85 16 15 C -0.01 -0.07 4.70 -104.27 -0.49 -0.56 16 16 C -0.17 -1.62 9.15 -39.78 -0.36 -1.99 16 17 C 0.14 1.41 11.14 -17.47 -0.19 1.22 16 18 N -0.47 -6.33 10.22 -10.93 -0.11 -6.44 16 19 C 0.10 1.28 6.61 -84.79 -0.56 0.72 16 20 C 0.12 1.47 7.31 -39.31 -0.29 1.19 16 21 F -0.13 -1.71 17.12 2.25 0.04 -1.67 16 22 C -0.14 -1.36 9.91 -39.88 -0.40 -1.75 16 23 C -0.10 -0.92 9.95 -39.93 -0.40 -1.32 16 24 C -0.08 -0.84 9.32 -39.50 -0.37 -1.21 16 25 C -0.06 -0.74 5.74 -106.81 -0.61 -1.36 16 26 C 0.06 0.86 5.44 -3.77 -0.02 0.84 16 27 C 0.07 1.31 5.43 -3.77 -0.02 1.29 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.07 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.74 7.17 -51.93 -0.37 0.37 16 36 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16 37 H 0.14 1.02 8.02 -52.49 -0.42 0.60 16 38 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.14 1.31 6.73 -52.48 -0.35 0.96 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.96 6.99 -51.93 -0.36 0.60 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.79 6.79 -51.93 -0.35 1.44 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -31.97 367.59 -11.60 -43.57 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.41 Total: -3.06 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -4.19 Total: -8.29 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.55 Total: -52.51 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.97 -11.60 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232208941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.636 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds