Wall clock time and date at job start Sat Apr 11 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99873 * 2 1 4 4 H 1.48504 * 109.46820 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46671 * 299.99932 * 3 2 1 6 6 H 1.48489 * 109.47369 * 60.00030 * 3 2 1 7 7 C 1.37875 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00219 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46963 * 179.97438 * 9 7 2 11 11 C 1.46961 * 110.99875 * 170.00012 * 10 9 7 12 12 C 1.53044 * 109.36532 * 183.18867 * 11 10 9 13 13 N 1.46958 * 109.36528 * 301.60296 * 12 11 10 14 14 C 1.46904 * 110.99996 * 183.19025 * 13 12 11 15 15 C 1.50704 * 109.47160 * 164.21469 * 14 13 12 16 16 C 1.36603 * 120.92567 * 105.24496 * 15 14 13 17 17 C 1.39289 * 119.93217 * 179.85356 * 16 15 14 18 18 N 1.31104 * 121.74417 * 0.39456 * 17 16 15 19 19 C 1.33628 * 121.32072 * 359.82200 * 18 17 16 20 20 C 1.40828 * 121.07723 * 179.97438 * 19 18 17 21 21 F 1.35094 * 120.15297 * 0.04991 * 20 19 18 22 22 C 1.36282 * 119.69281 * 180.02562 * 20 19 18 23 23 C 1.39323 * 121.04366 * 0.02562 * 22 20 19 24 24 C 1.36137 * 120.90461 * 359.97438 * 23 22 20 25 25 C 1.40450 * 119.66814 * 0.02562 * 24 23 22 26 26 C 1.46951 * 110.88280 * 59.31691 * 13 12 11 27 27 C 1.46954 * 111.00359 * 293.80002 * 10 9 7 28 28 H 0.97001 * 120.00320 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.46972 * 60.00342 * 9 7 2 30 30 H 1.08992 * 109.47315 * 300.00313 * 9 7 2 31 31 H 1.08999 * 109.48491 * 63.22139 * 11 10 9 32 32 H 1.09000 * 109.48766 * 303.16266 * 11 10 9 33 33 H 1.08997 * 109.49046 * 181.63578 * 12 11 10 34 34 H 1.09005 * 109.48901 * 61.56700 * 12 11 10 35 35 H 1.08999 * 109.47273 * 44.21517 * 14 13 12 36 36 H 1.09003 * 109.47105 * 284.21277 * 14 13 12 37 37 H 1.08001 * 120.03391 * 0.02783 * 16 15 14 38 38 H 1.08003 * 119.13071 * 180.19827 * 17 16 15 39 39 H 1.08000 * 119.47493 * 180.02562 * 22 20 19 40 40 H 1.07997 * 119.54573 * 180.02562 * 23 22 20 41 41 H 1.08009 * 120.16433 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.48939 * 60.65065 * 26 13 12 43 43 H 1.09004 * 109.48730 * 180.71376 * 26 13 12 44 44 H 1.09005 * 109.48803 * 296.78139 * 27 10 9 45 45 H 1.09001 * 109.48716 * 56.82303 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 1.5211 -4.8941 0.2364 12 6 2.5566 -6.0189 0.3068 13 7 3.3187 -6.0588 -0.9491 14 6 4.2733 -7.1754 -0.9503 15 6 4.7493 -7.4278 -2.3577 16 6 6.0001 -7.0482 -2.7545 17 6 6.4199 -7.2944 -4.0596 18 7 5.6406 -7.8806 -4.9359 19 6 4.4045 -8.2728 -4.6134 20 6 3.5714 -8.9015 -5.5590 21 9 4.0156 -9.1194 -6.8161 22 6 2.3154 -9.2895 -5.1998 23 6 1.8385 -9.0739 -3.9086 24 6 2.6152 -8.4692 -2.9682 25 6 3.9153 -8.0556 -3.3016 26 6 4.0032 -4.7804 -1.1873 27 6 2.9677 -3.6557 -1.2576 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8896 31 1 0.8249 -5.0912 -0.5788 32 1 0.9741 -4.8438 1.1779 33 1 2.0488 -6.9720 0.4544 34 1 3.2364 -5.8358 1.1390 35 1 3.7854 -8.0710 -0.5657 36 1 5.1253 -6.9258 -0.3179 37 1 6.6639 -6.5601 -2.0562 38 1 7.4126 -6.9917 -4.3585 39 1 1.6797 -9.7717 -5.9276 40 1 0.8392 -9.3916 -3.6500 41 1 2.2332 -8.3077 -1.9709 42 1 4.6995 -4.5833 -0.3721 43 1 4.5501 -4.8307 -2.1288 44 1 2.2879 -3.8388 -2.0898 45 1 3.4752 -2.7024 -1.4055 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232208941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:54 Heat of formation + Delta-G solvation = 4.099351 kcal Electronic energy + Delta-G solvation = -27730.268854 eV Core-core repulsion = 23854.133201 eV Total energy + Delta-G solvation = -3876.135653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.90823 -41.91510 -40.08228 -38.02915 -37.06578 -34.98666 -33.95298 -31.87644 -31.65647 -30.85839 -30.04523 -27.85344 -25.76856 -24.91950 -24.64301 -24.23132 -23.23698 -21.83471 -20.62440 -19.46038 -18.63763 -18.48663 -18.02490 -17.28996 -16.82836 -16.79691 -16.43872 -16.17653 -15.82888 -15.71734 -15.63629 -15.42269 -15.12798 -15.04424 -14.68830 -14.38636 -14.10623 -13.88157 -13.57061 -13.36226 -13.15519 -13.03491 -12.86840 -12.71878 -12.66634 -12.42195 -12.25843 -12.11297 -12.10152 -11.93155 -11.52413 -11.27153 -11.06224 -10.63390 -10.58358 -9.87392 -9.36866 -9.10353 -9.01225 -8.21724 -6.31880 -0.69073 -0.25910 0.82166 1.40353 1.40646 1.54133 1.90274 2.39291 2.79540 2.98941 3.10691 3.12866 3.26024 3.31222 3.62911 3.69198 3.85366 3.91338 3.99806 4.11454 4.23079 4.23163 4.35436 4.39730 4.47455 4.49058 4.52529 4.66366 4.69613 4.70504 4.88552 4.91309 4.97788 5.01481 5.05126 5.06248 5.11228 5.20979 5.22789 5.29182 5.44489 5.53319 5.63399 5.83622 5.98735 6.04098 6.07354 6.33533 6.63699 6.82450 6.84524 7.38113 8.89666 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.002765 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.130373 B =10125.698571 C =10280.459757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.542 5.542 11 C 0.052 3.948 12 C 0.073 3.927 13 N -0.540 5.540 14 C 0.093 3.907 15 C -0.015 4.015 16 C -0.165 4.165 17 C 0.131 3.869 18 N -0.509 5.509 19 C 0.070 3.930 20 C 0.080 3.920 21 F -0.142 7.142 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.086 4.086 25 C -0.077 4.077 26 C 0.074 3.926 27 C 0.071 3.929 28 H 0.264 0.736 29 H -0.044 1.044 30 H 0.005 0.995 31 H 0.020 0.980 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.167 0.833 38 H 0.188 0.812 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.007 0.993 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 -21.654 -3.723 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.267 5.267 11 C -0.077 4.077 12 C -0.055 4.055 13 N -0.265 5.265 14 C -0.033 4.033 15 C -0.024 4.024 16 C -0.185 4.185 17 C -0.040 4.040 18 N -0.218 5.218 19 C -0.051 4.051 20 C 0.060 3.940 21 F -0.120 7.120 22 C -0.147 4.147 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.080 4.080 26 C -0.054 4.054 27 C -0.058 4.058 28 H 0.073 0.927 29 H -0.026 1.026 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.088 0.912 37 H 0.184 0.816 38 H 0.205 0.795 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.025 0.975 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.568 -21.759 -4.652 24.221 hybrid contribution -0.268 1.440 0.150 1.473 sum 9.300 -20.319 -4.502 22.795 Atomic orbital electron populations 1.70092 1.07756 1.27834 1.51865 1.25921 0.95737 1.03232 0.94827 0.85343 0.79053 0.78597 0.77693 1.18571 1.20611 1.20293 1.21486 0.93596 0.91069 1.49880 0.91877 1.19337 0.90085 0.89101 0.93213 1.62229 1.27260 1.03222 1.33960 1.22202 0.95914 0.89508 1.00029 1.22129 0.95208 0.98438 0.89693 1.62089 1.26177 1.02881 1.35387 1.21109 0.96013 0.95373 0.90830 1.20250 0.93061 0.93199 0.95841 1.22196 0.97165 1.01027 0.98094 1.23471 0.99673 0.91553 0.89329 1.67988 1.04165 1.12435 1.37168 1.19073 0.92533 1.00661 0.92860 1.17504 0.94215 1.02984 0.79316 1.91455 1.90051 1.92767 1.37756 1.21234 0.93394 1.00707 0.99323 1.21102 1.01589 0.97847 0.91255 1.21370 0.91669 0.95729 1.01648 1.18663 0.96561 1.00077 0.92668 1.22035 0.94618 0.87801 1.00954 1.21920 0.95688 0.98411 0.89732 0.92699 1.02610 0.97649 0.96208 0.90918 0.87322 0.93559 0.87028 0.91161 0.81561 0.79466 0.81988 0.81502 0.82759 0.93450 0.90332 0.97455 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 2 C 0.00 0.04 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.52 -29.56 8.47 25.60 0.22 -29.35 16 8 H 0.06 3.50 7.13 -2.91 -0.02 3.48 16 9 C 0.21 11.19 4.72 85.56 0.40 11.59 16 10 N -0.54 -22.91 4.70 -900.30 -4.23 -27.15 16 11 C 0.05 1.74 5.61 86.31 0.48 2.22 16 12 C 0.07 1.67 5.58 86.31 0.48 2.16 16 13 N -0.54 -12.31 4.52 -900.29 -4.07 -16.38 16 14 C 0.09 1.49 4.31 85.56 0.37 1.86 16 15 C -0.01 -0.28 4.70 -19.64 -0.09 -0.37 16 16 C -0.16 -2.76 9.15 22.14 0.20 -2.56 16 17 C 0.13 2.57 11.14 85.05 0.95 3.52 16 18 N -0.51 -13.69 10.22 -188.51 -1.93 -15.61 16 19 C 0.07 1.87 6.61 40.35 0.27 2.14 16 20 C 0.08 2.03 7.31 22.45 0.16 2.20 16 21 F -0.14 -4.00 17.12 44.97 0.77 -3.23 16 22 C -0.13 -2.36 9.91 22.07 0.22 -2.14 16 23 C -0.10 -1.60 9.95 22.04 0.22 -1.38 16 24 C -0.09 -1.57 9.32 22.32 0.21 -1.36 16 25 C -0.08 -1.73 5.74 -21.28 -0.12 -1.85 16 26 C 0.07 2.05 5.44 86.31 0.47 2.52 16 27 C 0.07 2.75 5.43 86.31 0.47 3.22 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H -0.04 -2.59 8.12 -2.38 -0.02 -2.61 16 30 H 0.01 0.31 8.03 -2.39 -0.02 0.29 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.11 1.76 8.02 -2.39 -0.02 1.74 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.11 1.31 7.17 -2.39 -0.02 1.30 16 36 H 0.07 0.94 7.90 -2.39 -0.02 0.93 16 37 H 0.17 1.79 8.02 -2.91 -0.02 1.77 16 38 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.15 2.33 6.73 -2.91 -0.02 2.31 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 2.04 6.99 -2.38 -0.02 2.02 16 44 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 45 H 0.06 2.70 6.79 -2.39 -0.02 2.68 16 Total: -1.00 -73.02 367.59 -0.78 -73.81 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.99 Total: 5.63 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.37 Total: -7.09 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -9.94 Total: -115.33 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.77 Total: -3.23 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -73.02 -0.78 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232208941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.905 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds