Wall clock time and date at job start Sat Apr 11 2020 02:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00106 * 2 1 4 4 C 1.50701 * 109.46855 * 66.04582 * 3 2 1 5 5 H 1.08000 * 120.00303 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99406 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99631 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00282 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46989 * 90.00557 * 8 6 4 10 10 H 1.48499 * 109.46918 * 210.00438 * 8 6 4 11 11 H 1.48502 * 109.46908 * 330.00256 * 8 6 4 12 12 C 1.46898 * 110.99963 * 236.04235 * 2 1 3 13 13 C 1.50699 * 109.47454 * 293.95652 * 12 2 1 14 14 C 1.38249 * 119.95979 * 104.99936 * 13 12 2 15 15 C 1.38130 * 120.08228 * 180.02562 * 14 13 12 16 16 C 1.38763 * 119.99524 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.04810 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00481 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99770 * 269.72826 * 19 18 17 21 21 C 1.38239 * 119.99901 * 179.76875 * 20 19 18 22 22 C 1.38240 * 119.99645 * 0.50240 * 21 20 19 23 23 C 1.38227 * 120.00205 * 359.74956 * 22 21 20 24 24 C 1.38232 * 119.99860 * 90.00268 * 19 18 17 25 25 C 1.38674 * 119.91479 * 0.25529 * 16 15 14 26 26 C 1.38383 * 119.91923 * 359.51332 * 25 16 15 27 27 F 1.35101 * 120.00216 * 180.20929 * 26 25 16 28 28 H 1.09001 * 109.47243 * 183.95277 * 1 2 3 29 29 H 1.09001 * 109.46942 * 303.95405 * 1 2 3 30 30 H 1.08995 * 109.47116 * 63.95608 * 1 2 3 31 31 H 1.08994 * 109.47167 * 186.04671 * 3 2 1 32 32 H 1.08999 * 109.46938 * 306.04536 * 3 2 1 33 33 H 0.96998 * 119.99533 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47383 * 173.95227 * 12 2 1 35 35 H 1.09000 * 109.47266 * 53.95587 * 12 2 1 36 36 H 1.08004 * 119.95927 * 359.97438 * 14 13 12 37 37 H 1.08002 * 120.00392 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47259 * 300.00417 * 18 17 16 39 39 H 1.09001 * 109.47074 * 60.00439 * 18 17 16 40 40 H 1.08001 * 120.00330 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.99843 * 180.23314 * 21 20 19 42 42 H 1.08002 * 119.99612 * 179.72381 * 22 21 20 43 43 H 1.07996 * 120.00251 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00407 * 0.02562 * 24 19 18 45 45 H 1.07997 * 120.04364 * 179.72777 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0268 3.3494 1.5284 7 7 1.7135 3.9393 2.6614 8 14 3.0000 4.2761 0.2309 9 1 2.0634 4.9798 -0.6817 10 1 3.8864 5.2677 0.8913 11 1 3.8240 3.3173 -0.5484 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2205 -0.9728 14 6 0.6295 -2.7744 -1.7406 15 6 0.2984 -4.1072 -1.5913 16 6 0.9777 -4.8917 -0.6702 17 8 0.6525 -6.2029 -0.5220 18 6 1.3939 -6.9501 0.4444 19 6 0.8977 -8.3729 0.4678 20 6 -0.1266 -8.7336 1.3232 21 6 -0.5850 -10.0377 1.3412 22 6 -0.0121 -10.9832 0.5113 23 6 1.0156 -10.6236 -0.3402 24 6 1.4706 -9.3184 -0.3620 25 6 1.9850 -4.3347 0.1033 26 6 2.3170 -3.0004 -0.0525 27 9 3.3009 -2.4571 0.6971 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 1.9881 4.8554 2.8233 34 1 3.0797 -0.6612 -1.1756 35 1 1.5611 -0.3874 -2.0628 36 1 0.1001 -2.1642 -2.4575 37 1 -0.4891 -4.5385 -2.1915 38 1 2.4512 -6.9387 0.1795 39 1 1.2613 -6.5025 1.4294 40 1 -0.5709 -7.9960 1.9750 41 1 -1.3878 -10.3187 2.0068 42 1 -0.3672 -12.0030 0.5286 43 1 1.4635 -11.3624 -0.9883 44 1 2.2741 -9.0376 -1.0268 45 1 2.5120 -4.9423 0.8240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232919328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:57 Heat of formation + Delta-G solvation = -21.985858 kcal Electronic energy + Delta-G solvation = -26499.179253 eV Core-core repulsion = 22589.619709 eV Total energy + Delta-G solvation = -3909.559544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.56698 -40.42231 -39.40481 -37.90850 -36.14609 -32.78191 -32.40121 -31.31032 -30.83174 -30.48805 -27.77618 -27.11059 -26.11580 -23.64204 -23.00928 -22.99842 -21.57815 -21.24679 -20.08484 -18.57288 -17.50419 -16.84997 -16.64748 -16.35510 -15.94643 -15.53575 -15.50625 -15.28255 -14.77165 -14.49323 -14.31933 -14.15552 -14.11348 -13.89965 -13.80264 -13.20261 -13.13792 -12.87018 -12.43427 -12.37420 -12.27058 -11.83311 -11.53390 -11.51171 -11.35477 -11.29625 -11.17185 -10.97292 -10.76841 -10.64279 -10.18764 -9.82208 -9.32147 -9.28154 -9.27087 -8.88713 -8.55781 -8.12329 -7.37577 -6.02941 -3.99965 0.80419 1.00264 1.19077 1.29157 2.89918 3.29391 3.37122 3.39376 3.55314 3.58151 4.30085 4.37542 4.38219 4.43772 4.59775 4.69327 4.72991 4.80702 4.86146 4.89535 4.95777 5.06847 5.11052 5.22839 5.27717 5.32026 5.51310 5.53447 5.62858 5.68807 5.96347 6.00975 6.05051 6.09454 6.09955 6.15589 6.16294 6.20931 6.26103 6.46372 6.56109 6.69421 6.73867 6.85486 7.00307 7.22021 7.61069 7.90213 8.04913 8.67772 9.05957 9.58565 11.10233 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.002050 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.655038 B =13655.242253 C =13830.250469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.525 5.525 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.081 0.919 6 C 0.067 3.933 7 N -0.901 5.901 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.093 3.907 13 C -0.138 4.138 14 C -0.048 4.048 15 C -0.165 4.165 16 C 0.150 3.850 17 O -0.306 6.306 18 C 0.098 3.902 19 C -0.094 4.094 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.125 4.125 24 C -0.095 4.095 25 C -0.252 4.252 26 C 0.167 3.833 27 F -0.122 7.122 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.012 0.988 31 H 0.029 0.971 32 H -0.015 1.015 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 -28.807 -8.359 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.249 5.249 3 C 0.036 3.964 4 C -0.545 4.545 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.035 4.035 13 C -0.139 4.139 14 C -0.067 4.067 15 C -0.184 4.184 16 C 0.105 3.895 17 O -0.220 6.220 18 C 0.024 3.976 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.130 4.130 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.272 4.272 26 C 0.147 3.853 27 F -0.100 7.100 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.030 0.970 31 H 0.047 0.953 32 H 0.002 0.998 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.338 -28.934 -7.881 30.079 hybrid contribution 0.586 1.115 -0.974 1.592 sum -1.753 -27.819 -8.854 29.247 Atomic orbital electron populations 1.22266 0.88136 1.00041 1.00786 1.61986 1.07534 1.16332 1.39024 1.20206 0.95264 0.83797 0.97116 1.21024 1.35466 0.97131 1.00903 0.90116 1.24903 0.95791 0.97358 0.95357 1.69897 1.46943 1.13216 1.23915 0.86856 0.80641 0.80042 0.82166 1.20386 1.21147 1.19173 1.20938 1.00603 0.88555 0.93426 1.19940 0.98609 0.96922 0.98463 1.20755 0.94708 0.93693 0.97551 1.20359 1.03267 0.93392 1.01353 1.18603 0.93343 0.83093 0.94499 1.86144 1.59091 1.18872 1.57851 1.21619 0.95420 0.88153 0.92438 1.19502 0.98094 0.93580 0.98245 1.21142 0.95274 0.96605 0.98235 1.21186 1.00219 0.93210 0.99541 1.21248 0.96250 0.99601 0.95884 1.21167 0.97488 0.96213 0.99385 1.21110 0.99663 0.93074 0.97508 1.21107 1.03901 0.95702 1.06444 1.17164 0.87316 0.90299 0.90529 1.91557 1.58567 1.86019 1.73899 0.93316 0.90149 0.96994 0.95316 0.99783 0.92694 0.90324 0.94477 0.84652 0.84881 0.90910 0.90759 0.85613 0.85691 0.85887 0.85758 0.85744 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.16 60.07 0.55 1.26 16 2 N -0.53 -11.31 4.74 -245.83 -1.17 -12.48 16 3 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 4 C -0.51 -14.65 9.01 -34.44 -0.31 -14.96 16 5 H 0.08 2.54 7.37 -52.49 -0.39 2.16 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 8 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.09 1.63 4.77 -4.98 -0.02 1.61 16 13 C -0.14 -2.12 4.43 -104.53 -0.46 -2.58 16 14 C -0.05 -0.61 9.11 -39.62 -0.36 -0.97 16 15 C -0.16 -1.96 9.99 -39.43 -0.39 -2.35 16 16 C 0.15 1.86 6.69 -39.23 -0.26 1.60 16 17 O -0.31 -3.51 10.12 -19.42 -0.20 -3.71 16 18 C 0.10 0.89 4.87 36.01 0.18 1.06 16 19 C -0.09 -0.82 5.51 -104.62 -0.58 -1.40 16 20 C -0.09 -0.77 9.70 -39.58 -0.38 -1.16 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 22 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 23 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 24 C -0.10 -0.75 9.70 -39.58 -0.38 -1.14 16 25 C -0.25 -3.31 9.02 -39.37 -0.35 -3.67 16 26 C 0.17 2.63 7.24 -39.44 -0.29 2.35 16 27 F -0.12 -2.20 16.75 2.25 0.04 -2.17 16 28 H 0.05 0.85 6.88 -51.93 -0.36 0.49 16 29 H 0.08 1.76 6.76 -51.93 -0.35 1.41 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.03 0.72 6.99 -51.93 -0.36 0.36 16 32 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.08 1.40 7.87 -51.93 -0.41 0.99 16 35 H 0.04 0.59 7.93 -51.93 -0.41 0.18 16 36 H 0.14 1.45 8.00 -52.48 -0.42 1.03 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.07 0.57 7.62 -51.93 -0.40 0.18 16 39 H 0.07 0.62 7.59 -51.93 -0.39 0.23 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.14 1.52 6.30 -52.49 -0.33 1.19 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -32.80 378.03 -10.24 -43.04 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.34 Total: -2.20 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -4.38 Total: -18.14 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.39 Total: -39.59 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.20 Total: -3.71 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.80 -10.24 -43.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232919328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.056 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds