Wall clock time and date at job start Sat Apr 11 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00106 * 2 1 4 4 C 1.50701 * 109.46855 * 66.04582 * 3 2 1 5 5 H 1.08000 * 120.00303 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99406 * 180.02562 * 4 3 2 7 7 N 1.31521 * 119.99631 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00282 * 359.97438 * 6 4 3 9 9 H 1.48500 * 109.46989 * 90.00557 * 8 6 4 10 10 H 1.48499 * 109.46918 * 210.00438 * 8 6 4 11 11 H 1.48502 * 109.46908 * 330.00256 * 8 6 4 12 12 C 1.46898 * 110.99963 * 236.04235 * 2 1 3 13 13 C 1.50699 * 109.47454 * 293.95652 * 12 2 1 14 14 C 1.38249 * 119.95979 * 104.99936 * 13 12 2 15 15 C 1.38130 * 120.08228 * 180.02562 * 14 13 12 16 16 C 1.38763 * 119.99524 * 359.97438 * 15 14 13 17 17 O 1.35897 * 120.04810 * 179.97438 * 16 15 14 18 18 C 1.42898 * 117.00481 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 16 20 20 C 1.38234 * 119.99770 * 269.72826 * 19 18 17 21 21 C 1.38239 * 119.99901 * 179.76875 * 20 19 18 22 22 C 1.38240 * 119.99645 * 0.50240 * 21 20 19 23 23 C 1.38227 * 120.00205 * 359.74956 * 22 21 20 24 24 C 1.38232 * 119.99860 * 90.00268 * 19 18 17 25 25 C 1.38674 * 119.91479 * 0.25529 * 16 15 14 26 26 C 1.38383 * 119.91923 * 359.51332 * 25 16 15 27 27 F 1.35101 * 120.00216 * 180.20929 * 26 25 16 28 28 H 1.09001 * 109.47243 * 183.95277 * 1 2 3 29 29 H 1.09001 * 109.46942 * 303.95405 * 1 2 3 30 30 H 1.08995 * 109.47116 * 63.95608 * 1 2 3 31 31 H 1.08994 * 109.47167 * 186.04671 * 3 2 1 32 32 H 1.08999 * 109.46938 * 306.04536 * 3 2 1 33 33 H 0.96998 * 119.99533 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47383 * 173.95227 * 12 2 1 35 35 H 1.09000 * 109.47266 * 53.95587 * 12 2 1 36 36 H 1.08004 * 119.95927 * 359.97438 * 14 13 12 37 37 H 1.08002 * 120.00392 * 179.97438 * 15 14 13 38 38 H 1.09002 * 109.47259 * 300.00417 * 18 17 16 39 39 H 1.09001 * 109.47074 * 60.00439 * 18 17 16 40 40 H 1.08001 * 120.00330 * 359.97438 * 20 19 18 41 41 H 1.08001 * 119.99843 * 180.23314 * 21 20 19 42 42 H 1.08002 * 119.99612 * 179.72381 * 22 21 20 43 43 H 1.07996 * 120.00251 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.00407 * 0.02562 * 24 19 18 45 45 H 1.07997 * 120.04364 * 179.72777 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0268 3.3494 1.5284 7 7 1.7135 3.9393 2.6614 8 14 3.0000 4.2761 0.2309 9 1 2.0634 4.9798 -0.6817 10 1 3.8864 5.2677 0.8913 11 1 3.8240 3.3173 -0.5484 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2205 -0.9728 14 6 0.6295 -2.7744 -1.7406 15 6 0.2984 -4.1072 -1.5913 16 6 0.9777 -4.8917 -0.6702 17 8 0.6525 -6.2029 -0.5220 18 6 1.3939 -6.9501 0.4444 19 6 0.8977 -8.3729 0.4678 20 6 -0.1266 -8.7336 1.3232 21 6 -0.5850 -10.0377 1.3412 22 6 -0.0121 -10.9832 0.5113 23 6 1.0156 -10.6236 -0.3402 24 6 1.4706 -9.3184 -0.3620 25 6 1.9850 -4.3347 0.1033 26 6 2.3170 -3.0004 -0.0525 27 9 3.3009 -2.4571 0.6971 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 1.9881 4.8554 2.8233 34 1 3.0797 -0.6612 -1.1756 35 1 1.5611 -0.3874 -2.0628 36 1 0.1001 -2.1642 -2.4575 37 1 -0.4891 -4.5385 -2.1915 38 1 2.4512 -6.9387 0.1795 39 1 1.2613 -6.5025 1.4294 40 1 -0.5709 -7.9960 1.9750 41 1 -1.3878 -10.3187 2.0068 42 1 -0.3672 -12.0030 0.5286 43 1 1.4635 -11.3624 -0.9883 44 1 2.2741 -9.0376 -1.0268 45 1 2.5120 -4.9423 0.8240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232919328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:22:56 Heat of formation + Delta-G solvation = -40.667806 kcal Electronic energy + Delta-G solvation = -26499.989363 eV Core-core repulsion = 22589.619709 eV Total energy + Delta-G solvation = -3910.369654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.83341 -41.29716 -40.08444 -39.04768 -37.55343 -34.69716 -33.30699 -32.03793 -31.83224 -31.56567 -29.65340 -28.13683 -27.24580 -25.27447 -23.94390 -23.52733 -22.80555 -22.09689 -21.68730 -19.54637 -19.00159 -18.26286 -17.43647 -17.17986 -17.01363 -16.88267 -16.56247 -16.22817 -16.11968 -15.90909 -15.75738 -15.47194 -15.13314 -14.84666 -14.64547 -14.30655 -14.29555 -13.97778 -13.73912 -13.55673 -13.35820 -13.25296 -12.99128 -12.74173 -12.62608 -12.48657 -12.23524 -12.04764 -11.97414 -11.88082 -11.81491 -11.69231 -11.45424 -10.79153 -9.91855 -9.85958 -9.83714 -9.21024 -8.99193 -8.28266 -6.31722 0.16807 0.22716 0.23303 0.46527 1.33924 1.36777 1.47647 2.14101 2.34553 2.52575 2.94992 3.04580 3.30129 3.37646 3.61037 3.79321 3.80749 3.81055 3.94799 4.09824 4.17205 4.23301 4.26808 4.32090 4.43255 4.50104 4.57503 4.59630 4.64238 4.69055 4.70672 4.89902 4.99425 5.01046 5.07363 5.08533 5.11933 5.15874 5.21090 5.39341 5.51248 5.53460 5.58254 5.59133 5.67662 5.96999 6.05022 6.29428 6.35731 6.63707 6.74045 7.31501 8.88493 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028899 B = 0.002050 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.655038 B =13655.242253 C =13830.250469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.548 5.548 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.950 3.050 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.250 1.250 12 C 0.096 3.904 13 C -0.155 4.155 14 C -0.040 4.040 15 C -0.158 4.158 16 C 0.154 3.846 17 O -0.310 6.310 18 C 0.095 3.905 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.130 4.130 24 C -0.107 4.107 25 C -0.251 4.251 26 C 0.138 3.862 27 F -0.145 7.145 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.029 0.971 31 H 0.026 0.974 32 H -0.007 1.007 33 H 0.267 0.733 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.133 0.867 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -30.679 -10.972 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.272 5.272 3 C 0.046 3.954 4 C -0.554 4.554 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.773 3.227 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.173 1.173 12 C -0.031 4.031 13 C -0.156 4.156 14 C -0.058 4.058 15 C -0.177 4.177 16 C 0.108 3.892 17 O -0.224 6.224 18 C 0.020 3.980 19 C -0.112 4.112 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.148 4.148 24 C -0.125 4.125 25 C -0.270 4.270 26 C 0.118 3.882 27 F -0.124 7.124 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.178 0.822 37 H 0.176 0.824 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.163 0.837 44 H 0.151 0.849 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.622 -30.843 -10.504 32.687 hybrid contribution 0.578 1.477 -0.090 1.588 sum -2.044 -29.366 -10.593 31.285 Atomic orbital electron populations 1.22153 0.87216 1.00942 1.00044 1.61836 1.08568 1.14755 1.42020 1.19942 0.95123 0.85562 0.94801 1.21251 1.34832 0.97471 1.01871 0.94682 1.25885 0.96991 0.98427 0.97859 1.70059 1.48608 1.13867 1.26401 0.85677 0.79234 0.78636 0.79160 1.18931 1.20712 1.17349 1.20917 1.00101 0.89443 0.92659 1.19860 1.00191 0.95716 0.99853 1.20982 0.93558 0.94229 0.97069 1.20675 1.03183 0.92995 1.00830 1.18752 0.92756 0.83629 0.94092 1.86152 1.59486 1.18344 1.58439 1.21783 0.95820 0.88277 0.92070 1.19580 0.98928 0.93450 0.99211 1.21324 0.95561 0.97431 0.98556 1.21472 1.00637 0.92899 0.99898 1.21598 0.95840 1.00650 0.95209 1.21484 0.97455 0.96267 0.99577 1.21325 1.00045 0.93539 0.97638 1.21215 1.04155 0.94857 1.06798 1.17519 0.87812 0.91511 0.91357 1.91494 1.59677 1.86500 1.74698 0.91104 0.93650 0.95242 0.95560 0.98906 0.92432 0.91213 0.92276 0.82157 0.82402 0.89882 0.90473 0.85376 0.83984 0.83604 0.83713 0.84892 0.83241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.74 9.16 127.69 1.17 2.90 16 2 N -0.55 -23.57 4.74 -931.66 -4.42 -27.99 16 3 C 0.17 8.52 3.79 85.56 0.32 8.85 16 4 C -0.52 -30.78 9.01 25.60 0.23 -30.55 16 5 H 0.03 2.34 7.37 -2.91 -0.02 2.32 16 6 C 0.01 0.32 5.47 84.65 0.46 0.79 16 7 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 8 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 9 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 12 C 0.10 3.26 4.77 85.56 0.41 3.67 16 13 C -0.15 -4.56 4.43 -19.80 -0.09 -4.65 16 14 C -0.04 -0.90 9.11 22.25 0.20 -0.70 16 15 C -0.16 -3.29 9.99 22.37 0.22 -3.07 16 16 C 0.15 3.52 6.69 22.50 0.15 3.67 16 17 O -0.31 -6.59 10.12 -92.39 -0.93 -7.52 16 18 C 0.09 1.61 4.87 71.24 0.35 1.96 16 19 C -0.11 -1.84 5.51 -19.87 -0.11 -1.95 16 20 C -0.11 -1.71 9.70 22.27 0.22 -1.50 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.43 16 22 C -0.12 -1.28 10.05 22.27 0.22 -1.05 16 23 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 24 C -0.11 -1.54 9.70 22.27 0.22 -1.33 16 25 C -0.25 -6.38 9.02 22.41 0.20 -6.18 16 26 C 0.14 4.32 7.24 22.36 0.16 4.48 16 27 F -0.15 -5.39 16.75 44.97 0.75 -4.64 16 28 H 0.07 2.40 6.88 -2.39 -0.02 2.38 16 29 H 0.04 2.06 6.76 -2.39 -0.02 2.04 16 30 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.03 1.31 6.99 -2.39 -0.02 1.29 16 32 H -0.01 -0.32 7.55 -2.39 -0.02 -0.33 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.07 2.45 7.87 -2.39 -0.02 2.43 16 35 H 0.06 1.73 7.93 -2.39 -0.02 1.71 16 36 H 0.16 2.77 8.00 -2.91 -0.02 2.75 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.08 1.22 7.62 -2.39 -0.02 1.20 16 39 H 0.08 1.25 7.59 -2.39 -0.02 1.23 16 40 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 43 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 44 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 45 H 0.15 3.25 6.30 -2.91 -0.02 3.23 16 Total: -1.00 -73.07 378.03 3.30 -69.77 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.93 Total: 11.32 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.79 Total: -27.38 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -4.12 Total: -88.20 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.93 Total: -7.52 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.75 Total: -4.64 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Total: -73.07 3.30 -69.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232919328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.104 kcal (2) G-P(sol) polarization free energy of solvation -73.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds