Wall clock time and date at job start Sat Apr 11 2020 02:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30835 * 125.90179 * 2 1 4 4 N 1.40079 * 108.20520 * 179.97438 * 3 2 1 5 5 C 1.46501 * 126.03475 * 180.02562 * 4 3 2 6 6 C 1.34949 * 107.92553 * 359.75647 * 4 3 2 7 7 C 1.50704 * 126.12496 * 180.23960 * 6 4 3 8 8 C 1.35318 * 107.74494 * 0.39319 * 6 4 3 9 9 C 1.50697 * 126.03854 * 179.87439 * 8 6 4 10 10 N 1.46904 * 109.47212 * 269.71388 * 9 8 6 11 11 C 1.46892 * 111.00131 * 180.02562 * 10 9 8 12 12 H 1.09008 * 109.47114 * 324.99774 * 11 10 9 13 13 C 1.52997 * 109.47295 * 84.99918 * 11 10 9 14 14 C 1.50696 * 109.47167 * 204.99735 * 11 10 9 15 15 C 1.38300 * 119.93262 * 319.72911 * 14 11 10 16 16 C 1.38104 * 120.07247 * 179.72590 * 15 14 11 17 17 C 1.38880 * 119.92810 * 0.54158 * 16 15 14 18 18 O 1.35747 * 120.07174 * 179.75066 * 17 16 15 19 19 C 1.34825 * 117.00597 * 174.44425 * 18 17 16 20 20 H 1.08005 * 119.99735 * 5.05211 * 19 18 17 21 21 C 1.38651 * 120.00550 * 185.05478 * 19 18 17 22 22 N 1.31557 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47164 * 60.00242 * 23 21 19 25 25 H 1.48500 * 109.46831 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46959 * 299.99841 * 23 21 19 27 27 C 1.38882 * 119.86199 * 359.72799 * 17 16 15 28 28 C 1.38098 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09006 * 109.46871 * 270.02652 * 1 2 3 30 30 H 1.09004 * 109.47395 * 30.01901 * 1 2 3 31 31 H 1.08999 * 109.47443 * 150.02271 * 1 2 3 32 32 H 1.09005 * 109.46878 * 89.97715 * 5 4 3 33 33 H 1.09006 * 109.46731 * 209.97069 * 5 4 3 34 34 H 1.08996 * 109.47363 * 329.97016 * 5 4 3 35 35 H 1.08997 * 109.47163 * 270.17531 * 7 6 4 36 36 H 1.08994 * 109.47303 * 30.18202 * 7 6 4 37 37 H 1.09000 * 109.46546 * 150.17832 * 7 6 4 38 38 H 1.08995 * 109.47373 * 149.71092 * 9 8 6 39 39 H 1.09004 * 109.46922 * 29.70940 * 9 8 6 40 40 H 1.00903 * 110.99438 * 303.95835 * 10 9 8 41 41 H 1.08998 * 109.47148 * 299.99944 * 13 11 10 42 42 H 1.08994 * 109.47650 * 59.99661 * 13 11 10 43 43 H 1.09004 * 109.47560 * 180.02562 * 13 11 10 44 44 H 1.08005 * 119.96345 * 359.97438 * 15 14 11 45 45 H 1.08000 * 120.03674 * 180.27353 * 16 15 14 46 46 H 0.97001 * 120.00315 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.03671 * 179.97438 * 27 17 16 48 48 H 1.08000 * 119.97139 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 0.0006 5 6 4.7899 1.5006 0.0013 6 6 3.6141 -0.7155 0.0064 7 6 4.8349 -1.5991 0.0142 8 6 2.3270 -1.1331 0.0006 9 6 1.8597 -2.5658 0.0013 10 7 1.7086 -3.0323 -1.3835 11 6 1.2527 -4.4281 -1.4221 12 1 1.6928 -4.9772 -0.5895 13 6 -0.2727 -4.4697 -1.3109 14 6 1.6790 -5.0601 -2.7220 15 6 1.6022 -4.3373 -3.8986 16 6 1.9975 -4.9117 -5.0907 17 6 2.4619 -6.2204 -5.1088 18 8 2.8464 -6.7896 -6.2797 19 6 3.3942 -8.0197 -6.2116 20 1 3.4356 -8.5408 -5.2665 21 6 3.9044 -8.6157 -7.3548 22 7 3.8545 -7.9807 -8.5059 23 14 4.6641 -10.3196 -7.2602 24 1 3.6488 -11.2879 -6.7735 25 1 5.1321 -10.7284 -8.6090 26 1 5.8157 -10.2968 -6.3230 27 6 2.5326 -6.9455 -3.9264 28 6 2.1407 -6.3638 -2.7368 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 5.0820 1.7157 1.0292 33 1 5.6097 0.9978 -0.5118 34 1 4.5568 2.4330 -0.5129 35 1 5.1344 -1.8139 -1.0116 36 1 5.6484 -1.0903 0.5313 37 1 4.6048 -2.5321 0.5285 38 1 0.9007 -2.6350 0.5147 39 1 2.5930 -3.1868 0.5158 40 1 1.0824 -2.4332 -1.9005 41 1 -0.5811 -4.0126 -0.3707 42 1 -0.7128 -3.9207 -2.1433 43 1 -0.6110 -5.5056 -1.3391 44 1 1.2365 -3.3212 -3.8845 45 1 1.9414 -4.3453 -6.0085 46 1 4.2117 -8.3974 -9.3056 47 1 2.8929 -7.9636 -3.9373 48 1 2.1958 -6.9269 -1.8169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174024805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:05 Heat of formation + Delta-G solvation = 67.382702 kcal Electronic energy + Delta-G solvation = -27298.306098 eV Core-core repulsion = 23548.374921 eV Total energy + Delta-G solvation = -3749.931176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48679 -39.11035 -37.52148 -35.68384 -34.27974 -32.81980 -32.14709 -30.48448 -30.05163 -29.67083 -27.89196 -27.29738 -25.86795 -25.34091 -23.92201 -22.47362 -21.69257 -20.04771 -19.71164 -19.53805 -17.85652 -16.95118 -16.53535 -15.97345 -15.64786 -14.95361 -14.71327 -14.47027 -14.11453 -14.02908 -13.73475 -13.66810 -13.56565 -13.44628 -13.33323 -13.06021 -12.87926 -12.81332 -12.67285 -12.47598 -12.25708 -12.19039 -12.07145 -11.92513 -11.78739 -11.62339 -11.29368 -11.10513 -10.69836 -10.57739 -10.52102 -10.36462 -10.33143 -9.26140 -9.15928 -8.77348 -8.49547 -8.15042 -8.05697 -7.06410 -6.39439 -3.98187 1.74049 2.31875 2.34792 2.41545 2.59577 3.15662 3.16974 3.19548 4.01012 4.27133 4.45198 4.50398 4.70535 4.77378 4.87045 4.96454 5.07582 5.11875 5.12926 5.17008 5.22349 5.29463 5.36664 5.40447 5.41715 5.43963 5.51245 5.63873 5.68516 5.73867 5.77031 5.85597 5.90388 5.95767 6.03956 6.17400 6.22801 6.31499 6.51384 6.57771 6.80401 6.90955 6.96081 7.13487 7.15594 7.38950 7.51280 7.53636 7.55155 7.63645 7.92531 8.05926 9.06375 9.78568 10.78902 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.002330 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.435965 B =12016.436560 C =12676.910926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.081 3.919 3 N -0.303 5.303 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.108 3.892 7 C -0.090 4.090 8 C -0.234 4.234 9 C 0.140 3.860 10 N -0.674 5.674 11 C 0.140 3.860 12 H 0.075 0.925 13 C -0.176 4.176 14 C -0.163 4.163 15 C -0.052 4.052 16 C -0.195 4.195 17 C 0.153 3.847 18 O -0.181 6.181 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.233 4.233 28 C -0.069 4.069 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.338 0.662 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.269 0.731 47 H 0.124 0.876 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 13.663 19.609 23.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 N -0.125 5.125 4 N -0.160 5.160 5 C -0.039 4.039 6 C -0.020 4.020 7 C -0.149 4.149 8 C -0.246 4.246 9 C 0.011 3.989 10 N -0.304 5.304 11 C 0.031 3.969 12 H 0.093 0.907 13 C -0.235 4.235 14 C -0.165 4.165 15 C -0.071 4.071 16 C -0.214 4.214 17 C 0.099 3.901 18 O -0.085 6.085 19 C -0.467 4.467 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.764 3.236 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.253 4.253 28 C -0.088 4.088 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.157 0.843 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.079 0.921 47 H 0.142 0.858 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.117 14.912 19.056 24.223 hybrid contribution -0.390 -1.538 0.273 1.611 sum -1.507 13.373 19.330 23.553 Atomic orbital electron populations 1.20159 0.86981 1.03213 1.02733 1.22182 0.96650 0.90475 0.99287 1.77273 0.86267 1.22559 1.26451 1.48268 1.05426 1.04241 1.58074 1.21797 0.84069 0.94986 1.03021 1.20873 0.97123 0.84178 0.99839 1.20456 0.92384 0.98065 1.03962 1.19557 0.91211 0.95709 1.18094 1.20101 0.98835 0.89872 0.90123 1.60674 1.54864 1.02519 1.12388 1.20195 0.92250 0.88647 0.95832 0.90725 1.22501 0.97489 1.02643 1.00870 1.19078 1.08954 0.94762 0.93668 1.20312 0.97708 0.97817 0.91253 1.20208 1.09060 0.93815 0.98314 1.19383 0.92414 0.91867 0.86409 1.83976 1.67921 1.31532 1.25053 1.21255 1.38241 0.90575 0.96610 0.89229 1.25265 0.97039 0.99885 0.94372 1.70031 1.43189 1.37798 0.99048 0.85806 0.79359 0.80527 0.77869 1.19563 1.20341 1.19560 1.21095 1.10098 1.01548 0.92535 1.20537 0.97449 0.94132 0.96651 0.90713 0.90924 0.90660 0.91065 0.89502 0.89387 0.89501 0.91697 0.89523 0.94894 0.90879 0.84312 0.93348 0.92418 0.91973 0.87444 0.86851 0.92073 0.85782 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.12 36.01 0.36 -0.26 16 2 C 0.08 0.95 7.22 -82.41 -0.59 0.36 16 3 N -0.30 -3.97 12.57 33.67 0.42 -3.54 16 4 N -0.38 -4.24 4.01 -63.88 -0.26 -4.49 16 5 C 0.10 0.71 11.09 59.85 0.66 1.38 16 6 C 0.11 1.20 6.93 -82.26 -0.57 0.62 16 7 C -0.09 -0.77 9.68 36.01 0.35 -0.42 16 8 C -0.23 -2.70 5.61 -105.06 -0.59 -3.29 16 9 C 0.14 1.48 5.42 -4.97 -0.03 1.45 16 10 N -0.67 -8.14 5.70 -109.22 -0.62 -8.76 16 11 C 0.14 1.79 2.78 -68.87 -0.19 1.59 16 12 H 0.07 0.92 7.66 -51.92 -0.40 0.52 16 13 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 14 C -0.16 -2.72 4.96 -104.57 -0.52 -3.24 16 15 C -0.05 -0.94 9.31 -39.61 -0.37 -1.31 16 16 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 17 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 18 O -0.18 -5.25 9.76 0.07 0.00 -5.25 16 19 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 20 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.87 -25.70 13.67 55.48 0.76 -24.94 16 23 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 27 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 28 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.45 7.67 -51.93 -0.40 0.05 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.41 7.74 -51.93 -0.40 0.01 16 37 H 0.09 0.71 7.14 -51.93 -0.37 0.34 16 38 H 0.03 0.32 7.21 -51.93 -0.37 -0.06 16 39 H 0.07 0.75 7.05 -51.93 -0.37 0.38 16 40 H 0.34 4.04 7.81 -39.29 -0.31 3.73 16 41 H 0.05 0.45 7.45 -51.93 -0.39 0.07 16 42 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.11 1.69 7.25 -52.48 -0.38 1.31 16 45 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.12 2.72 5.64 -52.49 -0.30 2.42 16 48 H 0.10 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -33.49 396.43 -8.39 -41.88 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.30 Total: 6.17 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.34 Total: -22.72 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.30 Total: -41.74 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: 0.00 Total: -5.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.49 -8.39 -41.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174024805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.267 kcal (2) G-P(sol) polarization free energy of solvation -33.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds