Wall clock time and date at job start Sat Apr 11 2020 02:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35315 * 126.12920 * 2 1 4 4 C 1.50700 * 126.04126 * 359.97438 * 3 2 1 5 5 H 1.08998 * 109.47100 * 39.99075 * 4 3 2 6 6 C 1.53004 * 109.46667 * 279.99999 * 4 3 2 7 7 N 1.46891 * 109.47758 * 159.99721 * 4 3 2 8 8 C 1.46895 * 111.00654 * 204.99964 * 7 4 3 9 9 H 1.09004 * 109.46489 * 324.99990 * 8 7 4 10 10 C 1.53002 * 109.47383 * 84.99442 * 8 7 4 11 11 C 1.50696 * 109.47446 * 204.99996 * 8 7 4 12 12 C 1.38304 * 119.93060 * 319.72324 * 11 8 7 13 13 C 1.38096 * 120.06438 * 179.72614 * 12 11 8 14 14 C 1.38876 * 119.93414 * 0.54564 * 13 12 11 15 15 O 1.35753 * 120.07044 * 179.74737 * 14 13 12 16 16 C 1.34824 * 117.00293 * 174.44132 * 15 14 13 17 17 H 1.08000 * 119.99987 * 5.06012 * 16 15 14 18 18 C 1.38652 * 120.00148 * 185.05447 * 16 15 14 19 19 N 1.31552 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99784 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47401 * 60.00433 * 20 18 16 22 22 H 1.48506 * 109.46808 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47030 * 299.99992 * 20 18 16 24 24 C 1.38878 * 119.86107 * 359.72723 * 14 13 12 25 25 C 1.38094 * 119.93059 * 0.02562 * 24 14 13 26 26 C 1.39868 * 107.92200 * 179.97438 * 3 2 1 27 27 N 1.30840 * 108.20427 * 0.26296 * 26 3 2 28 28 N 1.34950 * 126.12558 * 179.97438 * 2 1 3 29 29 C 1.46501 * 126.03786 * 0.03309 * 28 2 1 30 30 H 1.09004 * 109.46663 * 89.99861 * 1 2 3 31 31 H 1.08998 * 109.47432 * 209.99635 * 1 2 3 32 32 H 1.09004 * 109.47260 * 329.99901 * 1 2 3 33 33 H 1.09004 * 109.47010 * 299.99485 * 6 4 3 34 34 H 1.08994 * 109.47508 * 59.99785 * 6 4 3 35 35 H 1.09003 * 109.47097 * 180.02562 * 6 4 3 36 36 H 1.00902 * 110.99702 * 328.95861 * 7 4 3 37 37 H 1.08994 * 109.46667 * 60.00264 * 10 8 7 38 38 H 1.08994 * 109.47545 * 180.02562 * 10 8 7 39 39 H 1.09006 * 109.47223 * 300.00785 * 10 8 7 40 40 H 1.07995 * 119.96294 * 0.02562 * 12 11 8 41 41 H 1.08007 * 120.02974 * 180.27343 * 13 12 11 42 42 H 0.96999 * 120.00089 * 179.97438 * 19 18 16 43 43 H 1.08000 * 120.03185 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96309 * 180.02562 * 25 24 14 45 45 H 1.08001 * 125.90189 * 180.02562 * 26 3 2 46 46 H 1.09000 * 109.46807 * 90.00504 * 29 28 2 47 47 H 1.09000 * 109.47051 * 209.99598 * 29 28 2 48 48 H 1.08996 * 109.47138 * 330.00519 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5275 -0.0005 5 1 0.9824 2.6325 0.6595 6 6 1.4493 2.9359 -1.4215 7 7 2.9320 3.3924 0.4733 8 6 2.4040 4.6380 1.0455 9 1 1.5168 4.9447 0.4914 10 6 2.0352 4.4093 2.5126 11 6 3.4518 5.7171 0.9532 12 6 4.7771 5.4158 1.2095 13 6 5.7404 6.4013 1.1202 14 6 5.3757 7.6983 0.7837 15 8 6.3197 8.6703 0.7002 16 6 5.9169 9.8785 0.2577 17 1 4.8699 10.0620 0.0666 18 6 6.8467 10.8855 0.0482 19 7 8.1221 10.6619 0.2807 20 14 6.2883 12.5596 -0.5641 21 1 5.3339 13.1495 0.4086 22 1 7.4662 13.4528 -0.7063 23 1 5.6212 12.4074 -1.8821 24 6 4.0434 7.9989 0.5324 25 6 3.0854 7.0080 0.6183 26 6 3.6334 0.6559 0.0006 27 7 3.6334 -0.6525 -0.0048 28 7 2.3026 -1.0900 0.0005 29 6 1.8538 -2.4846 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 2.3103 2.8309 -2.0816 34 1 0.6414 2.2942 -1.7731 35 1 1.1159 3.9737 -1.4220 36 1 3.5153 2.9076 1.1388 37 1 2.9223 4.1026 3.0666 38 1 1.6429 5.3334 2.9371 39 1 1.2772 3.6288 2.5794 40 1 5.0594 4.4078 1.4751 41 1 6.7758 6.1644 1.3162 42 1 8.7726 11.3663 0.1338 43 1 3.7567 9.0068 0.2709 44 1 2.0492 7.2411 0.4226 45 1 4.5084 1.2891 0.0011 46 1 1.7431 -2.8306 -1.0273 47 1 2.5895 -3.1030 0.5146 48 1 0.8951 -2.5578 0.5137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193025553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:26 Heat of formation + Delta-G solvation = 51.361952 kcal Electronic energy + Delta-G solvation = -27332.797615 eV Core-core repulsion = 23582.171727 eV Total energy + Delta-G solvation = -3750.625888 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.28596 -40.78204 -39.11527 -37.38968 -34.61254 -34.20941 -33.89216 -31.88582 -31.67706 -29.66641 -28.78066 -27.76141 -27.41414 -27.30699 -24.27132 -23.65993 -23.00659 -21.68734 -20.90490 -20.18686 -19.66850 -18.75608 -17.73315 -16.67722 -16.58806 -16.44068 -16.20482 -15.89650 -15.49072 -15.39932 -15.18901 -15.04362 -14.56791 -14.39090 -14.12513 -14.04508 -13.92756 -13.75636 -13.48831 -13.46372 -13.35004 -13.28513 -12.96359 -12.90289 -12.82324 -12.66602 -12.42037 -12.28496 -12.17578 -12.13088 -11.89963 -11.62201 -11.34477 -11.09421 -10.73792 -10.15286 -9.68178 -9.30630 -9.10544 -8.78028 -8.43165 -6.10930 0.69491 0.80686 0.94744 1.35853 1.47323 1.52436 1.70630 1.84867 2.20639 2.86907 3.17426 3.35948 3.59641 3.70126 3.84040 4.04942 4.14600 4.23281 4.26558 4.30428 4.39118 4.42281 4.46587 4.48068 4.51411 4.62816 4.67911 4.68650 4.78033 4.79295 4.88898 4.91458 4.98349 5.06217 5.10039 5.17662 5.18783 5.23027 5.29217 5.35165 5.39275 5.50992 5.69139 5.73470 5.78914 5.88785 6.08008 6.18699 6.30600 6.39720 6.61172 6.80367 7.01565 7.85163 8.80257 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.002130 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.120485 B =13141.107468 C =13500.824766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.090 3.910 3 C -0.253 4.253 4 C 0.176 3.824 5 H 0.061 0.939 6 C -0.131 4.131 7 N -0.683 5.683 8 C 0.147 3.853 9 H 0.091 0.909 10 C -0.170 4.170 11 C -0.136 4.136 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.108 3.892 15 O -0.237 6.237 16 C -0.411 4.411 17 H 0.101 0.899 18 C -0.027 4.027 19 N -0.923 5.923 20 Si 1.019 2.981 21 H -0.256 1.256 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.242 4.242 25 C -0.068 4.068 26 C 0.052 3.948 27 N -0.340 5.340 28 N -0.380 5.380 29 C 0.091 3.909 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.343 0.657 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.271 0.729 43 H 0.116 0.884 44 H 0.140 0.860 45 H 0.183 0.817 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.181 -23.847 0.381 32.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C -0.265 4.265 4 C 0.065 3.935 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.315 5.315 8 C 0.037 3.963 9 H 0.109 0.891 10 C -0.229 4.229 11 C -0.137 4.137 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.058 3.942 15 O -0.144 6.144 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.223 4.223 19 N -0.562 5.562 20 Si 0.838 3.162 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.182 1.182 24 C -0.261 4.261 25 C -0.086 4.086 26 C -0.133 4.133 27 N -0.162 5.162 28 N -0.163 5.163 29 C -0.049 4.049 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.162 0.838 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.158 0.842 45 H 0.200 0.800 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.957 -24.731 -0.199 32.416 hybrid contribution 0.108 1.385 0.515 1.482 sum -20.849 -23.346 0.316 31.302 Atomic orbital electron populations 1.20623 0.84632 1.05157 1.04512 1.21327 0.95986 0.86436 1.00175 1.19975 0.92324 0.95612 1.18551 1.19607 0.92113 0.85470 0.96278 0.92125 1.21763 1.00594 1.00888 0.95651 1.60576 1.21328 1.05824 1.43765 1.20180 0.94258 0.87843 0.94024 0.89091 1.22428 1.01752 1.02364 0.96365 1.19639 0.94485 0.94181 1.05390 1.20647 0.91856 0.97513 0.96476 1.20446 1.00312 0.90952 1.10950 1.19926 0.89539 0.89727 0.95005 1.83938 1.35008 1.19605 1.75848 1.21768 0.95355 0.86416 1.45214 0.88191 1.26604 0.94733 1.03953 0.97060 1.70188 1.02363 1.35588 1.48064 0.84650 0.78041 0.74299 0.79221 1.18061 1.19710 1.18230 1.21206 0.92660 1.00990 1.11235 1.20921 0.98758 0.91991 0.96951 1.23865 0.98774 0.91666 0.99008 1.77335 0.98348 1.13666 1.26850 1.48743 1.03317 1.07353 1.56920 1.22142 1.02174 0.76129 1.04409 0.88919 0.89223 0.88826 0.94155 0.91420 0.92746 0.83755 0.92890 0.92079 0.91166 0.84372 0.87562 0.91972 0.86580 0.84193 0.79981 0.89831 0.89431 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 9.90 71.23 0.71 0.10 16 2 C 0.09 1.38 6.93 41.40 0.29 1.67 16 3 C -0.25 -4.79 5.11 -20.14 -0.10 -4.89 16 4 C 0.18 3.04 2.56 44.17 0.11 3.15 16 5 H 0.06 0.88 6.46 -2.39 -0.02 0.86 16 6 C -0.13 -2.35 9.38 71.98 0.68 -1.67 16 7 N -0.68 -14.27 5.25 -477.18 -2.50 -16.77 16 8 C 0.15 3.21 2.60 44.17 0.11 3.32 16 9 H 0.09 1.82 6.97 -2.38 -0.02 1.80 16 10 C -0.17 -3.19 9.12 71.98 0.66 -2.53 16 11 C -0.14 -4.20 4.96 -19.83 -0.10 -4.30 16 12 C -0.05 -1.62 9.31 22.25 0.21 -1.41 16 13 C -0.21 -9.23 9.99 22.39 0.22 -9.01 16 14 C 0.11 5.56 6.65 22.58 0.15 5.71 16 15 O -0.24 -14.76 9.76 -22.72 -0.22 -14.98 16 16 C -0.41 -24.63 9.49 67.92 0.64 -23.99 16 17 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16 18 C -0.03 -1.55 5.49 84.83 0.47 -1.09 16 19 N -0.92 -58.22 13.67 21.61 0.30 -57.92 16 20 Si 1.02 43.90 29.55 68.60 2.03 45.93 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.24 -10.77 9.17 22.39 0.21 -10.57 16 25 C -0.07 -2.34 9.66 22.25 0.21 -2.13 16 26 C 0.05 1.19 10.91 85.24 0.93 2.12 16 27 N -0.34 -8.30 12.58 -57.02 -0.72 -9.02 16 28 N -0.38 -6.68 4.01 -356.04 -1.43 -8.11 16 29 C 0.09 0.76 11.27 127.77 1.44 2.20 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.23 7.08 -2.39 -0.02 0.22 16 32 H 0.09 0.51 7.38 -2.39 -0.02 0.49 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.99 7.43 -2.39 -0.02 0.97 16 36 H 0.34 7.01 6.54 -89.69 -0.59 6.42 16 37 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.04 7.43 -2.38 -0.02 1.02 16 40 H 0.14 3.94 7.25 -2.91 -0.02 3.92 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 44 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 45 H 0.18 4.01 7.73 -2.91 -0.02 3.99 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 48 H 0.11 0.24 7.05 -2.39 -0.02 0.22 16 Total: -1.00 -79.04 392.17 4.67 -74.37 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.39 Total: 29.81 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 6.83 Total: -43.31 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -4.35 Total: -91.82 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.22 Total: -14.98 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -79.04 4.67 -74.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193025553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.736 kcal (2) G-P(sol) polarization free energy of solvation -79.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds