Wall clock time and date at job start Sat Apr 11 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38224 * 119.61608 * 2 1 4 4 C 1.38633 * 119.15878 * 179.97438 * 3 2 1 5 5 C 1.38677 * 118.42031 * 0.02562 * 4 3 2 6 6 C 1.38178 * 119.15936 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.61240 * 180.02562 * 6 5 4 8 8 N 1.46502 * 109.46935 * 125.00376 * 7 6 5 9 9 N 1.40071 * 126.03966 * 89.97425 * 8 7 6 10 10 C 1.30831 * 108.34234 * 180.02562 * 9 8 7 11 11 C 1.50700 * 125.85812 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47214 * 5.62515 * 11 10 9 13 13 C 1.53000 * 109.47047 * 245.62658 * 11 10 9 14 14 C 1.52999 * 109.46985 * 125.62854 * 11 10 9 15 15 C 1.39824 * 108.28160 * 0.26751 * 10 9 8 16 16 C 1.50700 * 126.07949 * 179.70311 * 15 10 9 17 17 C 1.50698 * 109.47248 * 95.73339 * 16 15 10 18 18 H 1.08003 * 120.00009 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00111 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99921 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47426 * 59.99831 * 21 19 17 23 23 H 1.48508 * 109.47077 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47332 * 299.99787 * 21 19 17 25 25 C 1.35136 * 126.03274 * 269.99696 * 8 7 6 26 26 O 1.35754 * 126.19364 * 359.97438 * 25 8 7 27 27 N 1.31851 * 119.61522 * 180.25211 * 2 1 3 28 28 H 1.09007 * 109.47092 * 89.99452 * 1 2 3 29 29 H 1.08988 * 109.47358 * 209.99600 * 1 2 3 30 30 H 1.09001 * 109.47028 * 330.00489 * 1 2 3 31 31 H 1.08000 * 120.42454 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.79275 * 179.97438 * 4 3 2 33 33 H 1.07999 * 120.41431 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47435 * 4.99872 * 7 6 5 35 35 H 1.09004 * 109.46924 * 244.99975 * 7 6 5 36 36 H 1.08993 * 109.47057 * 299.99923 * 12 11 10 37 37 H 1.09000 * 109.46971 * 180.02562 * 12 11 10 38 38 H 1.09000 * 109.46823 * 60.00151 * 12 11 10 39 39 H 1.08997 * 109.47374 * 174.85529 * 13 11 10 40 40 H 1.09010 * 109.47118 * 294.85501 * 13 11 10 41 41 H 1.09003 * 109.47236 * 54.85233 * 13 11 10 42 42 H 1.09000 * 109.47187 * 299.99932 * 14 11 10 43 43 H 1.09000 * 109.47463 * 59.99835 * 14 11 10 44 44 H 1.09000 * 109.46944 * 179.97438 * 14 11 10 45 45 H 1.08995 * 109.46646 * 215.73022 * 16 15 10 46 46 H 1.08992 * 109.47275 * 335.73284 * 16 15 10 47 47 H 0.97003 * 119.99878 * 180.02562 * 20 19 17 48 48 H 0.96701 * 114.00055 * 89.98158 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 0.0005 6 6 3.4766 -1.1947 0.0005 7 6 4.1727 -2.5314 0.0011 8 7 3.6951 -3.3302 1.1325 9 7 2.6035 -4.2078 1.1191 10 6 2.4858 -4.7366 2.3100 11 6 1.4397 -5.7356 2.7328 12 6 0.6102 -6.1514 1.5163 13 6 0.5239 -5.1018 3.7820 14 6 2.1228 -6.9676 3.3297 15 6 3.4930 -4.2108 3.1249 16 6 3.7232 -4.5420 4.5769 17 6 4.7685 -5.6220 4.6862 18 1 5.2207 -6.0282 3.7934 19 6 5.1470 -6.0923 5.9258 20 7 4.5960 -5.5980 7.0128 21 14 6.4423 -7.4314 6.0611 22 1 7.7117 -6.9554 5.4551 23 1 6.6692 -7.7578 7.4920 24 1 5.9761 -8.6453 5.3440 25 6 4.2296 -3.3500 2.3734 26 8 5.3040 -2.6352 2.7951 27 7 2.1586 -1.1463 -0.0050 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6508 2.1373 -0.0004 32 1 4.1367 2.1139 0.0001 33 1 5.3057 -0.0805 0.0013 34 1 5.2484 -2.3808 0.0910 35 1 3.9556 -3.0544 -0.9303 36 1 0.1236 -5.2736 1.0912 37 1 -0.1467 -6.8735 1.8222 38 1 1.2627 -6.6028 0.7689 39 1 -0.2864 -5.7907 4.0207 40 1 1.0976 -4.8890 4.6841 41 1 0.1081 -4.1742 3.3886 42 1 2.7752 -7.4191 2.5823 43 1 2.7137 -6.6714 4.1964 44 1 1.3661 -7.6900 3.6359 45 1 4.0651 -3.6508 5.1030 46 1 2.7917 -4.8917 5.0219 47 1 4.8626 -5.9286 7.8850 48 1 5.0810 -1.7670 3.1577 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000418899014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:25:42 Heat of formation + Delta-G solvation = 56.622358 kcal Electronic energy + Delta-G solvation = -28995.960728 eV Core-core repulsion = 25245.562948 eV Total energy + Delta-G solvation = -3750.397780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.94170 -40.25218 -37.00611 -35.89866 -34.13331 -33.16765 -32.89981 -31.19176 -30.00010 -28.15736 -26.87440 -26.61525 -26.33039 -25.67254 -22.96557 -22.53308 -22.21368 -20.86072 -19.91174 -18.14315 -17.22549 -16.60044 -16.36769 -16.22764 -15.73276 -15.51189 -14.73663 -14.46082 -14.29078 -14.14040 -13.70618 -13.51280 -13.38843 -13.05284 -12.83771 -12.66235 -12.56879 -12.36245 -12.13928 -12.05739 -11.75606 -11.60767 -11.41917 -11.34540 -11.16373 -10.89185 -10.69759 -10.64086 -10.40399 -10.28228 -10.14556 -9.99851 -9.61158 -9.49937 -9.27001 -9.16449 -9.03116 -8.35203 -8.25907 -7.28645 -5.89871 -3.90136 0.84081 1.11197 2.41014 2.91004 3.40253 3.43667 3.46401 3.59303 3.66041 3.98741 4.45846 4.52436 4.55980 4.66146 4.83154 4.85607 5.07700 5.25473 5.27376 5.35284 5.40105 5.43121 5.43966 5.49659 5.52690 5.65623 5.85942 5.91258 5.94546 5.98663 6.10887 6.24128 6.33944 6.40666 6.48499 6.50695 6.50970 6.65148 6.69477 6.76757 6.95898 6.99227 7.18284 7.40912 7.50323 7.76899 7.88300 7.91658 8.07316 8.25116 8.49549 8.53556 9.13067 9.70983 11.19056 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013655 B = 0.003943 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.037185 B = 7100.328226 C = 8213.515481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.129 3.871 3 C -0.174 4.174 4 C -0.073 4.073 5 C -0.169 4.169 6 C 0.112 3.888 7 C 0.190 3.810 8 N -0.386 5.386 9 N -0.269 5.269 10 C 0.092 3.908 11 C 0.022 3.978 12 C -0.131 4.131 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.176 4.176 16 C 0.089 3.911 17 C -0.492 4.492 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.886 3.114 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.224 3.776 26 O -0.457 6.457 27 N -0.452 5.452 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.106 0.894 44 H 0.046 0.954 45 H 0.017 0.983 46 H 0.036 0.964 47 H 0.260 0.740 48 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 12.489 -13.742 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.099 4.099 5 C -0.190 4.190 6 C -0.027 4.027 7 C 0.067 3.933 8 N -0.180 5.180 9 N -0.093 5.093 10 C -0.075 4.075 11 C 0.020 3.980 12 C -0.189 4.189 13 C -0.197 4.197 14 C -0.209 4.209 15 C -0.187 4.187 16 C 0.051 3.949 17 C -0.530 4.530 18 H 0.070 0.930 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.715 3.285 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.202 1.202 25 C 0.059 3.941 26 O -0.257 6.257 27 N -0.162 5.162 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.124 0.876 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.712 11.366 -14.955 19.947 hybrid contribution 1.642 0.791 0.923 2.043 sum -5.069 12.157 -14.032 19.245 Atomic orbital electron populations 1.20716 0.88793 1.03640 1.02982 1.21378 0.97205 0.88125 0.94253 1.21993 0.95041 0.99292 1.03089 1.21543 0.94453 0.98157 0.95764 1.21960 1.01437 0.92788 1.02805 1.21577 0.90059 0.95261 0.95834 1.20244 0.97010 0.86095 0.89967 1.48501 1.24775 1.36317 1.08377 1.77303 1.02481 1.08426 1.21070 1.21880 0.97133 0.97555 0.90898 1.18856 0.91483 0.92673 0.95033 1.21763 0.99140 1.00711 0.97272 1.21924 0.98705 0.99704 0.99390 1.22127 1.00185 0.95097 1.03530 1.20562 0.96383 1.01603 1.00177 1.17740 0.97236 0.96225 0.83694 1.21023 1.20953 1.19207 0.91839 0.92977 1.24942 0.96512 0.96881 0.95905 1.69937 1.43165 1.43039 0.97594 0.86741 0.82476 0.82622 0.76699 1.20458 1.21450 1.20230 1.18509 0.90863 0.99537 0.85170 1.84927 1.27330 1.32883 1.80597 1.67394 1.09098 1.29106 1.10620 0.90464 0.90161 0.90819 0.84903 0.84709 0.84539 0.87696 0.87686 0.92760 0.93115 0.92848 0.92675 0.90760 0.93448 0.93490 0.87573 0.93539 0.96442 0.94559 0.93076 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.63 16 2 C 0.13 1.56 6.78 -82.59 -0.56 1.00 16 3 C -0.17 -1.69 9.74 -39.44 -0.38 -2.08 16 4 C -0.07 -0.67 10.18 -39.27 -0.40 -1.07 16 5 C -0.17 -1.77 9.71 -39.44 -0.38 -2.16 16 6 C 0.11 1.50 6.39 -82.59 -0.53 0.97 16 7 C 0.19 2.69 6.77 -5.19 -0.04 2.65 16 8 N -0.39 -7.18 3.56 -62.66 -0.22 -7.41 16 9 N -0.27 -5.43 11.86 33.66 0.40 -5.03 16 10 C 0.09 1.92 5.61 -82.43 -0.46 1.45 16 11 C 0.02 0.40 0.75 -155.66 -0.12 0.29 16 12 C -0.13 -2.11 7.96 37.16 0.30 -1.82 16 13 C -0.14 -2.42 8.32 37.16 0.31 -2.11 16 14 C -0.15 -2.98 8.26 37.16 0.31 -2.67 16 15 C -0.18 -4.01 5.13 -104.85 -0.54 -4.55 16 16 C 0.09 2.27 4.48 -29.04 -0.13 2.14 16 17 C -0.49 -13.68 7.48 -34.44 -0.26 -13.94 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.22 4.64 7.92 -16.92 -0.13 4.50 16 26 O -0.46 -8.60 13.53 -18.97 -0.26 -8.86 16 27 N -0.45 -6.73 10.13 -5.74 -0.06 -6.79 16 28 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.08 0.89 8.14 -51.94 -0.42 0.47 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.11 7.95 -52.49 -0.42 0.69 16 34 H 0.10 1.25 7.86 -51.93 -0.41 0.84 16 35 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 1.44 5.72 -51.92 -0.30 1.14 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.11 2.45 4.22 -51.93 -0.22 2.23 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.95 4.52 -51.93 -0.23 0.72 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.38 5.45 9.06 45.56 0.41 5.86 16 LS Contribution 393.47 15.07 5.93 5.93 Total: -1.00 -33.77 393.47 -7.86 -41.63 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.62 Total: 5.61 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.75 Total: -16.46 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.85 Total: -44.67 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.26 Total: -8.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.77 -7.86 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000418899014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.257 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds