Wall clock time and date at job start Sat Apr 11 2020 02:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38621 * 120.75319 * 2 1 4 4 C 1.38559 * 119.34923 * 179.75302 * 3 2 1 5 5 C 1.50701 * 119.54907 * 180.27311 * 4 3 2 6 6 N 1.31524 * 120.90597 * 0.53295 * 4 3 2 7 7 C 1.32720 * 121.63626 * 359.71783 * 6 4 3 8 8 C 1.48175 * 119.71535 * 179.97438 * 7 6 4 9 9 O 1.21517 * 119.99128 * 157.65722 * 8 7 6 10 10 N 1.34767 * 120.00566 * 337.65797 * 8 7 6 11 11 C 1.47147 * 121.00726 * 0.58232 * 10 8 7 12 12 C 1.53050 * 107.68309 * 237.41129 * 11 10 8 13 13 C 1.51142 * 111.10968 * 305.59872 * 12 11 10 14 14 H 1.08996 * 108.46319 * 175.38582 * 13 12 11 15 15 C 1.53990 * 113.17447 * 55.12840 * 13 12 11 16 16 H 1.09006 * 112.71538 * 75.96668 * 15 13 12 17 17 C 1.56019 * 100.38832 * 196.33736 * 15 13 12 18 18 C 1.54498 * 102.61675 * 36.87123 * 17 15 13 19 19 N 1.46474 * 113.22276 * 294.92029 * 13 12 11 20 20 C 1.36938 * 126.05586 * 330.48348 * 19 13 12 21 21 H 1.07998 * 120.00130 * 359.97438 * 20 19 13 22 22 C 1.38814 * 119.99802 * 179.97438 * 20 19 13 23 23 N 1.31624 * 120.00179 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00004 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47074 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47080 * 120.00189 * 24 22 20 27 27 H 1.48500 * 109.47384 * 240.00037 * 24 22 20 28 28 C 1.46523 * 121.01398 * 180.30381 * 10 8 7 29 29 C 1.38590 * 120.75653 * 180.27754 * 2 1 3 30 30 H 1.08997 * 109.46979 * 269.72186 * 1 2 3 31 31 H 1.09004 * 109.46849 * 149.72163 * 1 2 3 32 32 H 1.08998 * 109.47090 * 29.72082 * 1 2 3 33 33 H 1.08000 * 120.32512 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47367 * 270.25546 * 5 4 3 35 35 H 1.08999 * 109.46829 * 30.25578 * 5 4 3 36 36 H 1.09003 * 109.47006 * 150.25311 * 5 4 3 37 37 H 1.08995 * 109.81636 * 356.95820 * 11 10 8 38 38 H 1.08999 * 109.81653 * 117.80858 * 11 10 8 39 39 H 1.09006 * 109.14963 * 66.01335 * 12 11 10 40 40 H 1.08996 * 109.15623 * 185.17053 * 12 11 10 41 41 H 1.09000 * 110.77759 * 155.15115 * 17 15 13 42 42 H 1.08998 * 110.78214 * 278.59315 * 17 15 13 43 43 H 1.09003 * 109.90248 * 96.53869 * 18 17 15 44 44 H 1.08999 * 109.90400 * 217.59805 * 18 17 15 45 45 H 0.96996 * 119.99785 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.34534 * 244.65409 * 28 10 8 47 47 H 1.09008 * 109.34311 * 4.19563 * 28 10 8 48 48 H 1.08001 * 120.46806 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2159 1.1913 0.0000 4 6 3.6011 1.1573 0.0052 5 6 4.3761 2.4497 0.0115 6 7 4.2488 0.0127 -0.0004 7 6 3.6082 -1.1497 -0.0056 8 6 4.3807 -2.4141 -0.0123 9 8 3.8670 -3.4419 0.3831 10 7 5.6529 -2.4242 -0.4570 11 6 6.3008 -1.1902 -0.9288 12 6 6.7626 -1.4288 -2.3684 13 6 7.6358 -2.6588 -2.4632 14 1 7.8713 -2.8349 -3.5127 15 6 6.9638 -3.9240 -1.8983 16 1 6.2099 -4.3356 -2.5695 17 6 8.2060 -4.8542 -1.7372 18 6 9.3089 -3.8697 -1.2884 19 7 8.9013 -2.5260 -1.7378 20 6 9.5851 -1.3603 -1.5167 21 1 9.1953 -0.4260 -1.8928 22 6 10.7792 -1.3796 -0.8091 23 7 11.2545 -2.5184 -0.3512 24 14 11.7122 0.2104 -0.5081 25 1 10.9722 1.3423 -1.1215 26 1 11.8424 0.4388 0.9535 27 1 13.0636 0.1141 -1.1162 28 6 6.4349 -3.6631 -0.4796 29 6 2.2158 -1.1910 -0.0058 30 1 -0.3633 -0.0050 1.0276 31 1 -0.3633 -0.8875 -0.5182 32 1 -0.3633 0.8925 -0.5095 33 1 1.6936 2.1366 -0.0004 34 1 4.5630 2.7663 -1.0146 35 1 3.7997 3.2165 0.5290 36 1 5.3263 2.3011 0.5246 37 1 5.5890 -0.3653 -0.9010 38 1 7.1591 -0.9591 -0.2980 39 1 5.8890 -1.5604 -3.0070 40 1 7.3274 -0.5619 -2.7111 41 1 8.0269 -5.6094 -0.9718 42 1 8.4665 -5.3196 -2.6878 43 1 9.4010 -3.8856 -0.2024 44 1 10.2596 -4.1443 -1.7453 45 1 12.0887 -2.5318 0.1436 46 1 7.2737 -3.5733 0.2107 47 1 5.8024 -4.4950 -0.1695 48 1 1.6959 -2.1376 -0.0099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036755964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:23:39 Heat of formation + Delta-G solvation = 40.023635 kcal Electronic energy + Delta-G solvation = -29398.470222 eV Core-core repulsion = 25647.352667 eV Total energy + Delta-G solvation = -3751.117554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.96259 -39.51801 -38.01892 -35.14078 -34.26717 -33.03601 -32.49317 -31.52577 -29.24141 -28.29741 -27.85847 -27.37667 -25.64048 -24.44262 -23.07220 -22.43047 -21.36312 -20.05606 -19.76448 -18.32784 -17.26763 -16.53653 -16.30674 -16.12348 -15.65517 -15.17508 -15.08388 -14.53987 -14.31808 -14.07776 -13.84718 -13.61440 -13.54519 -13.16737 -12.91129 -12.88781 -12.82914 -12.39890 -12.36230 -12.22300 -12.03339 -11.80675 -11.42922 -11.31208 -11.04963 -10.95081 -10.75747 -10.60933 -10.13780 -10.05148 -10.00255 -9.85655 -9.71311 -9.58906 -9.55589 -9.11038 -8.75033 -8.56345 -8.07705 -6.76507 -5.67596 -2.99635 0.61274 1.00853 2.81860 3.25923 3.41311 3.46432 3.49244 3.68742 4.06265 4.34808 4.48799 4.52470 4.78749 4.88255 5.02861 5.13846 5.21686 5.27323 5.35914 5.38604 5.46503 5.47273 5.50377 5.55899 5.61950 5.65677 5.80132 5.89063 5.93966 5.95716 6.01239 6.06675 6.16076 6.21060 6.36594 6.38897 6.43610 6.53725 6.60353 6.76356 6.83240 6.89172 7.00769 7.10194 7.61455 7.64905 7.65483 7.85383 7.86558 8.28952 8.40793 9.25206 9.87442 10.55341 11.44794 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013972 B = 0.004111 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.560630 B = 6810.150970 C = 8281.131428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.158 4.158 4 C 0.126 3.874 5 C -0.107 4.107 6 N -0.448 5.448 7 C 0.101 3.899 8 C 0.564 3.436 9 O -0.551 6.551 10 N -0.574 5.574 11 C 0.080 3.920 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.015 0.985 15 C -0.115 4.115 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.177 3.823 19 N -0.594 5.594 20 C -0.219 4.219 21 H 0.079 0.921 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.124 3.876 29 C -0.125 4.125 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.250 0.750 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.486 6.430 -0.935 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.178 4.178 4 C -0.013 4.013 5 C -0.164 4.164 6 N -0.161 5.161 7 C -0.037 4.037 8 C 0.350 3.650 9 O -0.430 6.430 10 N -0.302 5.302 11 C -0.042 4.042 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.033 0.967 15 C -0.135 4.135 16 H 0.095 0.905 17 C -0.182 4.182 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.347 4.347 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.002 3.998 29 C -0.146 4.146 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.149 0.851 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.609 5.936 -0.620 19.542 hybrid contribution -0.080 0.748 0.094 0.758 sum -18.689 6.684 -0.526 19.855 Atomic orbital electron populations 1.20824 0.89781 1.03475 1.03068 1.20315 0.96986 0.92548 0.95550 1.22004 0.94729 0.98753 1.02324 1.21499 0.91275 0.94174 0.94353 1.20773 1.00675 0.91434 1.03537 1.67531 1.38870 0.97713 1.11991 1.21235 0.91669 0.92155 0.98609 1.17867 0.81630 0.86756 0.78771 1.90738 1.69845 1.32932 1.49465 1.47975 1.10982 1.11288 1.59986 1.22938 0.99775 0.86683 0.94769 1.21618 0.98485 1.00023 0.96672 1.20279 0.87111 0.91738 0.94704 0.96741 1.22809 0.96824 0.97963 0.95949 0.90521 1.23146 0.96376 0.98060 1.00573 1.21229 0.92926 0.82192 0.98437 1.44336 1.19930 1.03887 1.63783 1.19009 1.01518 0.85322 1.28893 0.90308 1.24762 0.98098 0.96847 1.00762 1.69966 1.21683 1.23320 1.41915 0.86119 0.79845 0.82741 0.77534 1.20520 1.21913 1.21951 1.21712 0.95030 0.85713 0.97365 1.21918 0.93631 0.99405 0.99624 0.90340 0.90777 0.90894 0.84525 0.90003 0.90621 0.89804 0.85057 0.89687 0.93406 0.90882 0.92013 0.92375 0.93563 0.94010 0.93936 0.90064 0.90286 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.06 36.01 0.36 -0.37 16 2 C -0.05 -0.45 5.91 -104.35 -0.62 -1.07 16 3 C -0.16 -1.48 9.45 -39.32 -0.37 -1.85 16 4 C 0.13 1.44 6.78 -82.60 -0.56 0.88 16 5 C -0.11 -0.93 10.16 36.01 0.37 -0.57 16 6 N -0.45 -6.53 6.29 -6.06 -0.04 -6.56 16 7 C 0.10 1.55 6.48 -83.01 -0.54 1.02 16 8 C 0.56 10.26 7.62 -12.18 -0.09 10.16 16 9 O -0.55 -11.04 15.97 5.35 0.09 -10.95 16 10 N -0.57 -10.68 2.93 -173.71 -0.51 -11.19 16 11 C 0.08 1.47 5.99 -3.66 -0.02 1.45 16 12 C -0.13 -2.37 5.19 -27.64 -0.14 -2.52 16 13 C 0.17 3.48 2.85 -68.36 -0.19 3.29 16 14 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 15 C -0.12 -2.13 3.88 -88.15 -0.34 -2.47 16 16 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 17 C -0.14 -2.71 6.29 -24.33 -0.15 -2.86 16 18 C 0.18 4.23 4.63 -2.74 -0.01 4.22 16 19 N -0.59 -14.51 3.12 -164.49 -0.51 -15.02 16 20 C -0.22 -5.81 9.02 -15.06 -0.14 -5.95 16 21 H 0.08 2.02 6.69 -52.49 -0.35 1.67 16 22 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -26.71 10.38 55.49 0.58 -26.13 16 24 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.12 2.36 5.47 -3.69 -0.02 2.34 16 29 C -0.12 -1.58 9.33 -39.06 -0.36 -1.94 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.44 8.10 -51.93 -0.42 0.01 16 32 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 33 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.13 2.22 3.91 -80.53 -0.31 1.90 16 38 H 0.08 1.82 7.48 -51.93 -0.39 1.43 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.38 7.01 -51.93 -0.36 1.01 16 41 H 0.06 1.07 7.97 -51.93 -0.41 0.65 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.05 1.22 6.98 -51.93 -0.36 0.86 16 44 H 0.04 1.11 7.57 -51.93 -0.39 0.72 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.08 1.74 6.81 -51.93 -0.35 1.38 16 47 H 0.08 1.47 7.00 -51.92 -0.36 1.11 16 48 H 0.14 1.73 7.81 -52.49 -0.41 1.32 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -31.68 371.02 -10.26 -41.94 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -7.49 Total: 2.12 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.93 Total: 3.42 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.48 Total: -58.91 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.68 -10.26 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036755964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.964 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds