Wall clock time and date at job start Sat Apr 11 2020 02:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.38146 * 120.50249 * 2 1 4 4 N 1.31817 * 120.89586 * 180.30658 * 3 2 1 5 5 C 1.31810 * 122.04938 * 359.72589 * 4 3 2 6 6 C 1.38151 * 120.89780 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.49897 * 179.97438 * 6 5 4 8 8 C 1.39817 * 118.99793 * 0.02562 * 6 5 4 9 9 C 1.48152 * 120.91990 * 180.02562 * 8 6 5 10 10 O 1.21508 * 120.00094 * 89.99314 * 9 8 6 11 11 N 1.34777 * 119.99395 * 269.99573 * 9 8 6 12 12 C 1.46597 * 119.68949 * 0.02562 * 11 9 8 13 13 C 1.54002 * 110.14581 * 131.78182 * 12 11 9 14 14 C 1.51518 * 107.32516 * 51.95686 * 13 12 11 15 15 H 1.08996 * 109.28636 * 52.57396 * 14 13 12 16 16 C 1.55374 * 107.26946 * 294.29874 * 14 13 12 17 17 H 1.09004 * 111.49993 * 309.10484 * 16 14 13 18 18 C 1.53740 * 100.22135 * 191.21313 * 16 14 13 19 19 C 1.55294 * 101.84085 * 39.09983 * 18 16 14 20 20 N 1.45470 * 117.33527 * 177.65107 * 14 13 12 21 21 C 1.36936 * 126.40704 * 328.71778 * 20 14 13 22 22 H 1.08001 * 119.99758 * 7.54573 * 21 20 14 23 23 C 1.38807 * 120.00419 * 187.54255 * 21 20 14 24 24 N 1.31625 * 119.99915 * 8.10334 * 23 21 20 25 25 Si 1.86799 * 120.00222 * 188.10662 * 23 21 20 26 26 H 1.48497 * 109.47283 * 94.80146 * 25 23 21 27 27 H 1.48509 * 109.47116 * 214.79948 * 25 23 21 28 28 H 1.48503 * 109.46964 * 334.79992 * 25 23 21 29 29 C 1.47721 * 119.68091 * 179.97438 * 11 9 8 30 30 H 1.09003 * 109.47327 * 270.24662 * 1 2 3 31 31 H 1.09000 * 109.47361 * 30.24690 * 1 2 3 32 32 H 1.09006 * 109.47684 * 150.24426 * 1 2 3 33 33 H 1.07999 * 119.55271 * 0.03393 * 3 2 1 34 34 H 1.08002 * 119.55019 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47317 * 270.02518 * 7 6 5 36 36 H 1.09001 * 109.46862 * 30.02718 * 7 6 5 37 37 H 1.09002 * 109.46935 * 150.01763 * 7 6 5 38 38 H 1.09001 * 109.25239 * 252.44213 * 12 11 9 39 39 H 1.08999 * 109.25404 * 11.86733 * 12 11 9 40 40 H 1.09000 * 110.28674 * 292.27182 * 13 12 11 41 41 H 1.09007 * 109.50309 * 171.18720 * 13 12 11 42 42 H 1.08997 * 110.95720 * 280.96200 * 18 16 14 43 43 H 1.08995 * 110.95239 * 157.23304 * 18 16 14 44 44 H 1.08994 * 109.91942 * 96.85933 * 19 18 16 45 45 H 1.09002 * 109.91555 * 218.16292 * 19 18 16 46 46 H 0.97001 * 120.00185 * 180.02562 * 24 23 21 47 47 H 1.08997 * 110.07062 * 112.87338 * 29 11 9 48 48 H 1.08998 * 110.16661 * 351.34144 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5262 1.1993 -0.0061 5 6 4.2333 0.0870 -0.0070 6 6 3.6135 -1.1477 -0.0011 7 6 4.4307 -2.4138 -0.0028 8 6 2.2165 -1.2047 0.0054 9 6 1.5077 -2.5057 0.0125 10 8 1.2220 -3.0362 1.0677 11 7 1.1801 -3.1008 -1.1515 12 6 1.5287 -2.4549 -2.4206 13 6 2.2012 -3.4690 -3.3646 14 6 1.2959 -4.6814 -3.4432 15 1 0.2877 -4.3614 -3.7062 16 6 1.2737 -5.3327 -2.0327 17 1 2.2820 -5.4951 -1.6518 18 6 0.5782 -6.6646 -2.3582 19 6 1.2075 -7.0255 -3.7313 20 7 1.7026 -5.7626 -4.3273 21 6 2.4111 -5.6369 -5.4923 22 1 2.8271 -4.6799 -5.7707 23 6 2.5947 -6.7394 -6.3155 24 7 1.9582 -7.8633 -6.0620 25 14 3.7451 -6.6281 -7.7830 26 1 5.0883 -7.1311 -7.3983 27 1 3.2084 -7.4515 -8.8963 28 1 3.8531 -5.2133 -8.2211 29 6 0.4739 -4.3982 -1.1364 30 1 -0.3634 0.0044 1.0277 31 1 -0.3634 0.8877 -0.5177 32 1 -0.3635 -0.8922 -0.5100 33 1 1.6690 2.1261 0.0006 34 1 5.3119 0.1415 -0.0116 35 1 4.6227 -2.7210 -1.0308 36 1 5.3780 -2.2354 0.5061 37 1 3.8826 -3.2007 0.5154 38 1 0.6239 -2.0626 -2.8847 39 1 2.2184 -1.6331 -2.2280 40 1 3.1767 -3.7593 -2.9744 41 1 2.3138 -3.0258 -4.3541 42 1 -0.4998 -6.5302 -2.4467 43 1 0.8152 -7.4210 -1.6100 44 1 2.0362 -7.7191 -3.5892 45 1 0.4533 -7.4715 -4.3796 46 1 2.0868 -8.6338 -6.6370 47 1 -0.5363 -4.2788 -1.5278 48 1 0.4371 -4.7942 -0.1216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036772185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:02 Heat of formation + Delta-G solvation = 25.468821 kcal Electronic energy + Delta-G solvation = -29399.233120 eV Core-core repulsion = 25647.484421 eV Total energy + Delta-G solvation = -3751.748698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.19654 -39.72479 -38.23008 -35.47073 -33.97463 -33.86537 -32.65206 -31.64685 -29.79144 -28.44009 -27.77696 -27.48184 -25.24711 -24.44588 -22.94270 -22.46170 -21.51217 -20.27918 -20.02131 -19.29788 -17.67166 -17.22464 -16.52011 -16.29532 -15.38967 -15.03212 -14.79659 -14.69692 -14.65255 -14.38766 -13.91293 -13.70942 -13.55116 -13.47700 -13.17964 -12.99865 -12.80260 -12.68460 -12.66218 -12.49620 -12.43413 -11.82397 -11.68814 -11.56173 -11.41951 -10.92976 -10.84414 -10.80644 -10.42826 -10.15918 -10.15715 -9.96793 -9.77639 -9.65578 -9.54456 -9.43145 -9.03650 -8.69759 -8.63470 -6.87480 -5.77124 -3.11265 0.78949 0.82029 2.41613 2.88469 3.36089 3.41435 3.43624 3.46343 4.13244 4.21445 4.44376 4.46095 4.47717 4.71682 4.92830 4.93657 4.96797 5.13804 5.16988 5.26476 5.31444 5.33934 5.40836 5.44140 5.46925 5.48534 5.53139 5.67813 5.72554 5.80372 5.83532 5.88901 5.93700 5.96098 6.06234 6.10769 6.15334 6.26355 6.37645 6.40712 6.52375 6.55920 6.73509 6.98986 7.29351 7.43488 7.59957 7.69371 7.74184 8.00160 8.19005 9.13148 9.77723 10.45893 11.35278 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003537 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.597549 B = 7914.492816 C = 8736.749300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C 0.091 3.909 4 N -0.471 5.471 5 C 0.093 3.907 6 C -0.098 4.098 7 C -0.120 4.120 8 C -0.076 4.076 9 C 0.564 3.436 10 O -0.535 6.535 11 N -0.596 5.596 12 C 0.112 3.888 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.021 0.979 16 C -0.125 4.125 17 H 0.080 0.920 18 C -0.135 4.135 19 C 0.175 3.825 20 N -0.593 5.593 21 C -0.229 4.229 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.908 3.092 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.252 0.748 47 H 0.072 0.928 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 14.237 11.925 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.105 4.105 3 C -0.066 4.066 4 N -0.178 5.178 5 C -0.064 4.064 6 C -0.100 4.100 7 C -0.177 4.177 8 C -0.087 4.087 9 C 0.351 3.649 10 O -0.412 6.412 11 N -0.328 5.328 12 C -0.011 4.011 13 C -0.167 4.167 14 C 0.059 3.941 15 H 0.038 0.962 16 C -0.145 4.145 17 H 0.098 0.902 18 C -0.173 4.173 19 C 0.051 3.949 20 N -0.317 5.317 21 C -0.357 4.357 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.005 3.995 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.782 14.595 12.240 19.064 hybrid contribution 0.263 -0.802 -0.920 1.249 sum -0.519 13.793 11.320 17.851 Atomic orbital electron populations 1.20800 0.89729 1.03525 1.03232 1.20951 0.97674 0.92633 0.99270 1.22585 0.89809 0.97104 0.97062 1.67536 1.08219 1.31470 1.10605 1.22617 1.00380 0.86586 0.96845 1.20991 0.92645 0.97769 0.98633 1.20847 0.99494 0.93787 1.03543 1.20130 0.93756 0.93837 1.00935 1.18215 0.78521 0.84092 0.84114 1.90787 1.54798 1.64946 1.30697 1.48333 1.56780 1.22075 1.05577 1.21840 1.00009 0.95501 0.83743 1.21897 0.99668 0.96396 0.98770 1.20619 0.95219 0.89186 0.89033 0.96186 1.22636 0.99576 0.95592 0.96687 0.90181 1.22698 0.99256 0.95591 0.99799 1.21526 0.97132 0.88038 0.88235 1.44171 1.64457 1.00684 1.22412 1.18975 1.25352 0.95848 0.95535 0.90458 1.24793 1.00307 0.96360 0.98776 1.69948 1.44115 1.02485 1.39892 0.86164 0.80554 0.77285 0.82141 1.21674 1.21753 1.20610 1.21667 0.94889 0.81310 1.01672 0.90262 0.90436 0.91186 0.82335 0.82241 0.89881 0.90454 0.90941 0.91330 0.90652 0.91320 0.90501 0.92129 0.92051 0.94605 0.92664 0.93731 0.90972 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.67 36.00 0.35 -0.68 16 2 C -0.10 -1.11 5.93 -104.07 -0.62 -1.73 16 3 C 0.09 0.92 10.86 -17.59 -0.19 0.73 16 4 N -0.47 -5.39 10.33 -13.30 -0.14 -5.53 16 5 C 0.09 0.98 10.86 -17.59 -0.19 0.79 16 6 C -0.10 -1.12 5.66 -104.07 -0.59 -1.71 16 7 C -0.12 -1.26 9.67 36.00 0.35 -0.91 16 8 C -0.08 -0.95 3.65 -104.64 -0.38 -1.33 16 9 C 0.56 8.10 4.37 -12.19 -0.05 8.05 16 10 O -0.53 -9.31 16.46 5.36 0.09 -9.22 16 11 N -0.60 -8.18 2.99 -173.49 -0.52 -8.70 16 12 C 0.11 1.45 6.24 -3.47 -0.02 1.43 16 13 C -0.13 -2.05 5.43 -26.96 -0.15 -2.20 16 14 C 0.17 3.18 2.59 -67.97 -0.18 3.00 16 15 H 0.02 0.41 7.92 -51.93 -0.41 -0.01 16 16 C -0.12 -2.08 2.84 -89.39 -0.25 -2.34 16 17 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 18 C -0.13 -2.38 6.54 -25.13 -0.16 -2.54 16 19 C 0.18 4.06 5.46 -1.91 -0.01 4.05 16 20 N -0.59 -14.25 3.35 -163.09 -0.55 -14.80 16 21 C -0.23 -6.05 9.89 -15.06 -0.15 -6.20 16 22 H 0.08 1.96 7.19 -52.49 -0.38 1.59 16 23 C -0.01 -0.15 5.45 -17.43 -0.09 -0.25 16 24 N -0.92 -26.32 10.66 55.49 0.59 -25.73 16 25 Si 0.91 21.52 29.56 -169.99 -5.03 16.49 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 C 0.13 1.81 5.95 -3.79 -0.02 1.79 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.07 0.70 7.17 -51.93 -0.37 0.33 16 33 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 37 H 0.07 0.90 7.17 -51.93 -0.37 0.53 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.91 6.06 -51.93 -0.31 0.59 16 40 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 41 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 42 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 45 H 0.06 1.43 7.25 -51.93 -0.38 1.06 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 48 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 LS Contribution 376.56 15.07 5.67 5.67 Total: -1.00 -31.57 376.56 -9.83 -41.40 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.59 Total: 0.44 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.37 Total: -0.05 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.61 Total: -54.75 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.57 -9.83 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.869 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds