Wall clock time and date at job start Sat Apr 11 2020 02:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38601 * 120.32960 * 2 1 4 4 N 1.31494 * 120.90195 * 179.75029 * 3 2 1 5 5 C 1.32740 * 121.64366 * 0.56243 * 4 3 2 6 6 C 1.48165 * 119.72298 * 179.71714 * 5 4 3 7 7 O 1.21519 * 120.00215 * 164.42704 * 6 5 4 8 8 N 1.34776 * 119.99643 * 344.42173 * 6 5 4 9 9 C 1.46603 * 119.67592 * 172.82710 * 8 6 5 10 10 C 1.53958 * 110.57278 * 132.20174 * 9 8 6 11 11 C 1.51224 * 107.40939 * 50.83007 * 10 9 8 12 12 H 1.08993 * 108.30941 * 53.42985 * 11 10 9 13 13 C 1.55049 * 108.10717 * 295.39889 * 11 10 9 14 14 H 1.08999 * 112.08040 * 308.95365 * 13 11 10 15 15 C 1.53740 * 100.34057 * 190.74490 * 13 11 10 16 16 C 1.55290 * 101.84480 * 38.92047 * 15 13 11 17 17 N 1.45468 * 117.53746 * 177.79359 * 11 10 9 18 18 C 1.36940 * 126.40280 * 329.92016 * 17 11 10 19 19 H 1.08003 * 120.00061 * 359.71226 * 18 17 11 20 20 C 1.38811 * 119.99956 * 179.70669 * 18 17 11 21 21 N 1.31625 * 120.00012 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99994 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47358 * 60.00553 * 22 20 18 24 24 H 1.48503 * 109.47199 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47481 * 300.00332 * 22 20 18 26 26 C 1.47715 * 119.68530 * 352.84260 * 8 6 5 27 27 C 1.39271 * 120.55438 * 359.43543 * 5 4 3 28 28 C 1.38588 * 120.31914 * 180.02562 * 2 1 3 29 29 C 1.50693 * 120.76008 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46447 * 269.97851 * 1 2 3 31 31 H 1.09002 * 109.46530 * 29.97594 * 1 2 3 32 32 H 1.08990 * 109.47308 * 149.97624 * 1 2 3 33 33 H 1.08005 * 119.54363 * 0.04261 * 3 2 1 34 34 H 1.09003 * 109.25052 * 252.47573 * 9 8 6 35 35 H 1.08994 * 109.26185 * 11.94883 * 9 8 6 36 36 H 1.08996 * 109.87976 * 170.51111 * 10 9 8 37 37 H 1.09003 * 109.87725 * 291.51118 * 10 9 8 38 38 H 1.08999 * 110.95484 * 280.78336 * 15 13 11 39 39 H 1.09002 * 110.95479 * 157.05944 * 15 13 11 40 40 H 1.09002 * 109.92061 * 218.17420 * 16 15 13 41 41 H 1.08999 * 109.91462 * 96.87231 * 16 15 13 42 42 H 0.97002 * 119.99842 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.06640 * 112.82325 * 26 8 6 44 44 H 1.09004 * 110.06845 * 351.25105 * 26 8 6 45 45 H 1.08001 * 120.47128 * 180.24913 * 27 5 4 46 46 H 1.08999 * 109.47455 * 269.98282 * 29 28 2 47 47 H 1.09003 * 109.47151 * 29.97946 * 29 28 2 48 48 H 1.09005 * 109.47463 * 149.97378 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1963 0.0000 4 7 3.5218 1.2095 0.0049 5 6 4.2295 0.0865 -0.0010 6 6 5.7098 0.1509 -0.0015 7 8 6.3611 -0.8368 0.2758 8 7 6.3338 1.3051 -0.3095 9 6 7.7882 1.4074 -0.1557 10 6 8.4236 2.0226 -1.4159 11 6 7.6674 3.2942 -1.7291 12 1 7.6603 3.9174 -0.8349 13 6 6.2092 2.9111 -2.0907 14 1 6.1669 2.1322 -2.8519 15 6 5.6983 4.2544 -2.6368 16 6 6.9341 4.7693 -3.4236 17 7 8.1222 4.0854 -2.8619 18 6 9.4074 4.1764 -3.3260 19 1 10.1988 3.6297 -2.8349 20 6 9.6928 4.9712 -4.4276 21 7 8.7283 5.6379 -5.0258 22 14 11.4460 5.0959 -5.0603 23 1 11.9263 3.7477 -5.4566 24 1 11.4845 6.0012 -6.2368 25 1 12.3211 5.6383 -3.9901 26 6 5.5459 2.4549 -0.7985 27 6 3.5923 -1.1520 -0.0010 28 6 2.2067 -1.1963 -0.0005 29 6 1.4779 -2.5153 -0.0005 30 1 -0.3632 -0.0004 1.0277 31 1 -0.3632 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6649 2.1305 0.0007 34 1 8.0152 2.0365 0.7050 35 1 8.2034 0.4128 0.0067 36 1 9.4733 2.2488 -1.2290 37 1 8.3373 1.3278 -2.2513 38 1 5.4429 4.9340 -1.8237 39 1 4.8469 4.1066 -3.3012 40 1 7.0319 5.8476 -3.2973 41 1 6.8297 4.5245 -4.4806 42 1 8.9279 6.1936 -5.7954 43 1 5.5641 3.2602 -0.0641 44 1 4.5182 2.1482 -0.9936 45 1 4.1694 -2.0648 -0.0018 46 1 1.3029 -2.8338 1.0271 47 1 0.5228 -2.4028 -0.5137 48 1 2.0808 -3.2636 -0.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036777939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:30 Heat of formation + Delta-G solvation = 42.198536 kcal Electronic energy + Delta-G solvation = -28710.055357 eV Core-core repulsion = 24959.032113 eV Total energy + Delta-G solvation = -3751.023244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.10877 -39.63238 -38.14665 -35.40342 -34.84253 -32.72334 -32.50390 -31.70836 -29.55676 -28.76010 -28.13287 -27.33932 -24.96380 -23.80625 -23.12644 -22.66053 -21.72284 -20.13627 -19.76981 -19.07129 -17.52921 -16.78727 -16.51055 -15.75765 -15.51712 -15.35559 -14.93688 -14.87818 -14.67518 -14.32982 -13.84473 -13.57388 -13.43913 -13.29424 -13.18875 -13.14986 -13.03229 -12.76646 -12.45109 -12.31399 -12.06608 -11.85255 -11.55855 -11.42400 -11.32603 -10.76400 -10.74326 -10.55901 -10.24436 -10.11239 -9.99689 -9.80739 -9.75965 -9.72629 -9.56345 -9.21384 -8.84963 -8.57728 -8.38416 -6.78468 -5.67459 -3.00026 0.46725 0.93223 2.67445 3.05794 3.43213 3.47507 3.48387 3.62869 3.98968 4.31482 4.37308 4.52485 4.53651 4.55425 4.89288 5.05321 5.10409 5.13808 5.18841 5.26130 5.34853 5.40541 5.41423 5.49556 5.55623 5.58773 5.63686 5.70494 5.73441 5.84306 5.95712 5.98275 5.99509 6.20361 6.23985 6.31766 6.32772 6.42472 6.54394 6.59024 6.69205 6.73383 6.96941 7.15091 7.45089 7.58255 7.61377 7.66043 7.84726 8.22275 8.29061 9.24155 9.87645 10.56210 11.45147 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021979 B = 0.002916 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.619592 B = 9598.255262 C =10372.221485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C 0.095 3.905 4 N -0.445 5.445 5 C 0.081 3.919 6 C 0.565 3.435 7 O -0.546 6.546 8 N -0.584 5.584 9 C 0.113 3.887 10 C -0.128 4.128 11 C 0.167 3.833 12 H 0.018 0.982 13 C -0.127 4.127 14 H 0.075 0.925 15 C -0.133 4.133 16 C 0.178 3.822 17 N -0.595 5.595 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.103 3.897 27 C -0.109 4.109 28 C -0.053 4.053 29 C -0.118 4.118 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.129 0.871 45 H 0.146 0.854 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 -11.994 11.243 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.064 4.064 4 N -0.157 5.157 5 C -0.056 4.056 6 C 0.352 3.648 7 O -0.424 6.424 8 N -0.314 5.314 9 C -0.009 4.009 10 C -0.167 4.167 11 C 0.059 3.941 12 H 0.035 0.965 13 C -0.147 4.147 14 H 0.093 0.907 15 C -0.172 4.172 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.019 4.019 27 C -0.130 4.130 28 C -0.061 4.061 29 C -0.175 4.175 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.180 0.820 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.164 0.836 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.756 -11.573 11.213 23.978 hybrid contribution 0.618 -0.458 -0.474 0.904 sum -17.138 -12.032 10.739 23.533 Atomic orbital electron populations 1.20825 0.89985 1.03527 1.02831 1.21001 0.97720 0.93617 1.00004 1.22869 0.89688 0.97756 0.96039 1.67837 1.08023 1.29104 1.10689 1.21160 0.94372 0.89599 1.00462 1.17949 0.85814 0.83211 0.77859 1.90747 1.65942 1.34959 1.50727 1.48171 1.08013 1.12559 1.62626 1.21712 0.78682 1.02244 0.98271 1.21831 1.00130 0.98279 0.96480 1.20520 0.91241 0.90801 0.91555 0.96458 1.22629 0.98082 0.97726 0.96291 0.90703 1.22682 0.99371 0.95457 0.99711 1.21519 0.81954 0.95385 0.95808 1.44211 1.04390 1.51415 1.31900 1.18969 0.83355 1.23515 1.09361 0.90463 1.24782 0.97586 0.99745 0.98400 1.69935 1.30113 1.33573 1.23445 0.86232 0.84150 0.77399 0.78191 1.21234 1.21662 1.21219 1.22693 0.97351 0.87209 0.94631 1.21967 0.94121 0.98971 0.97928 1.20189 0.93217 0.95859 0.96795 1.20879 1.00454 0.93047 1.03075 0.90565 0.90809 0.90833 0.81959 0.91741 0.89365 0.90576 0.91590 0.92307 0.92268 0.94419 0.92877 0.93784 0.91394 0.85415 0.83622 0.90319 0.90527 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 9.65 36.01 0.35 -0.20 16 2 C -0.12 -0.98 5.91 -104.36 -0.62 -1.60 16 3 C 0.10 0.90 10.86 -17.56 -0.19 0.71 16 4 N -0.44 -5.56 6.28 -9.80 -0.06 -5.62 16 5 C 0.08 1.11 6.45 -83.01 -0.54 0.58 16 6 C 0.57 9.28 7.60 -12.18 -0.09 9.19 16 7 O -0.55 -10.07 15.76 5.35 0.08 -9.98 16 8 N -0.58 -9.54 3.00 -173.47 -0.52 -10.06 16 9 C 0.11 1.86 6.34 -3.49 -0.02 1.84 16 10 C -0.13 -2.41 5.48 -27.13 -0.15 -2.56 16 11 C 0.17 3.50 2.55 -68.30 -0.17 3.33 16 12 H 0.02 0.39 7.89 -51.93 -0.41 -0.02 16 13 C -0.13 -2.33 2.85 -89.54 -0.26 -2.59 16 14 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.13 -2.50 6.54 -25.13 -0.16 -2.66 16 16 C 0.18 4.34 5.45 -1.92 -0.01 4.33 16 17 N -0.59 -15.23 3.35 -163.46 -0.55 -15.78 16 18 C -0.22 -6.24 9.88 -15.06 -0.15 -6.39 16 19 H 0.08 2.07 7.21 -52.48 -0.38 1.70 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.33 10.44 55.49 0.58 -26.76 16 22 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.10 1.61 5.26 -3.76 -0.02 1.59 16 27 C -0.11 -1.26 9.33 -39.05 -0.36 -1.63 16 28 C -0.05 -0.47 5.91 -104.35 -0.62 -1.09 16 29 C -0.12 -0.68 9.67 36.00 0.35 -0.33 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.07 0.29 6.06 -51.93 -0.31 -0.03 16 33 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.44 6.92 -51.93 -0.36 1.09 16 36 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 37 H 0.07 1.32 8.13 -51.93 -0.42 0.90 16 38 H 0.06 1.01 8.11 -51.93 -0.42 0.59 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 41 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 44 H 0.13 1.88 4.29 -71.83 -0.31 1.57 16 45 H 0.15 1.63 7.72 -52.49 -0.41 1.22 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.33 6.07 -51.93 -0.32 0.01 16 48 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -33.02 371.31 -10.10 -43.11 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.44 Total: -0.04 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.76 Total: 2.17 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.55 Total: -58.22 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.02 -10.10 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.312 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds