Wall clock time and date at job start Sat Apr 11 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38605 * 120.32435 * 2 1 4 4 N 1.31497 * 120.90441 * 180.02562 * 3 2 1 5 5 C 1.32752 * 121.64060 * 359.97438 * 4 3 2 6 6 C 1.48165 * 119.72062 * 179.97438 * 5 4 3 7 7 O 1.21518 * 119.99890 * 202.33760 * 6 5 4 8 8 N 1.34777 * 120.00001 * 22.33343 * 6 5 4 9 9 C 1.46601 * 119.68106 * 179.84011 * 8 6 5 10 10 C 1.53954 * 110.57742 * 227.84821 * 9 8 6 11 11 C 1.51517 * 107.34606 * 308.95009 * 10 9 8 12 12 H 1.08993 * 109.27852 * 306.29467 * 11 10 9 13 13 C 1.55364 * 107.79235 * 64.85742 * 11 10 9 14 14 H 1.09003 * 111.51422 * 50.61329 * 13 11 10 15 15 C 1.53739 * 100.22132 * 168.51675 * 13 11 10 16 16 C 1.55293 * 101.87400 * 320.88721 * 15 13 11 17 17 N 1.45469 * 116.86628 * 181.60667 * 11 10 9 18 18 C 1.36932 * 126.40688 * 30.87848 * 17 11 10 19 19 H 1.08008 * 119.99942 * 352.92563 * 18 17 11 20 20 C 1.38818 * 120.00202 * 172.92499 * 18 17 11 21 21 N 1.31614 * 119.99535 * 5.89901 * 20 18 17 22 22 Si 1.86793 * 120.00006 * 185.89998 * 20 18 17 23 23 H 1.48502 * 109.47230 * 94.98456 * 22 20 18 24 24 H 1.48496 * 109.47176 * 214.98305 * 22 20 18 25 25 H 1.48498 * 109.47620 * 334.98612 * 22 20 18 26 26 C 1.48910 * 119.82222 * 359.54861 * 8 6 5 27 27 C 1.39265 * 120.55116 * 0.25712 * 5 4 3 28 28 C 1.38586 * 120.32693 * 179.97438 * 2 1 3 29 29 C 1.50695 * 120.75491 * 0.02562 * 28 2 1 30 30 H 1.08999 * 109.46882 * 89.99916 * 1 2 3 31 31 H 1.08996 * 109.46823 * 210.00069 * 1 2 3 32 32 H 1.08996 * 109.46977 * 330.00061 * 1 2 3 33 33 H 1.08003 * 119.55117 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.25538 * 107.56521 * 9 8 6 35 35 H 1.09004 * 109.25260 * 348.12994 * 9 8 6 36 36 H 1.08998 * 109.88013 * 189.48374 * 10 9 8 37 37 H 1.09002 * 109.94109 * 68.44182 * 10 9 8 38 38 H 1.08998 * 110.96023 * 79.03860 * 15 13 11 39 39 H 1.08997 * 110.95708 * 202.73536 * 15 13 11 40 40 H 1.08998 * 109.92329 * 141.84746 * 16 15 13 41 41 H 1.09002 * 109.91928 * 263.15233 * 16 15 13 42 42 H 0.97011 * 119.99568 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.92017 * 8.92881 * 26 8 6 44 44 H 1.09002 * 110.80460 * 246.96223 * 26 8 6 45 45 H 1.08009 * 120.46788 * 179.72185 * 27 5 4 46 46 H 1.09002 * 109.47352 * 89.99342 * 29 28 2 47 47 H 1.08995 * 109.47024 * 209.99784 * 29 28 2 48 48 H 1.09009 * 109.47003 * 329.99909 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2097 -0.0005 5 6 4.2295 0.0866 -0.0005 6 6 5.7097 0.1513 -0.0017 7 8 6.3589 -0.7949 -0.4017 8 7 6.3362 1.2595 0.4409 9 6 7.8012 1.3145 0.4399 10 6 8.3244 1.8257 1.7946 11 6 7.5834 3.1092 2.1098 12 1 7.6852 3.7986 1.2718 13 6 6.0826 2.7562 2.3017 14 1 5.9525 1.9302 3.0010 15 6 5.5653 4.0769 2.8946 16 6 6.7324 4.4839 3.8348 17 7 7.9477 3.7931 3.3410 18 6 9.1822 3.7978 3.9335 19 1 9.9687 3.1659 3.5477 20 6 9.4229 4.6145 5.0298 21 7 8.4360 5.2962 5.5717 22 14 11.1472 4.7460 5.7359 23 1 11.8324 5.9272 5.1523 24 1 11.0678 4.8985 7.2109 25 1 11.9124 3.5169 5.4058 26 6 5.5367 2.4205 0.9207 27 6 3.5923 -1.1517 -0.0054 28 6 2.2067 -1.1962 0.0005 29 6 1.4780 -2.5153 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6647 2.1306 -0.0004 34 1 8.1351 1.9861 -0.3509 35 1 8.1983 0.3164 0.2546 36 1 9.3945 2.0220 1.7285 37 1 8.1307 1.0856 2.5711 38 1 5.4157 4.8226 2.1138 39 1 4.6471 3.9174 3.4597 40 1 6.8782 5.5635 3.8000 41 1 6.5144 4.1686 4.8552 42 1 8.6043 5.8673 6.3377 43 1 4.4849 2.1432 0.9916 44 1 5.6555 3.2745 0.2538 45 1 4.1695 -2.0646 -0.0099 46 1 1.3026 -2.8335 -1.0271 47 1 2.0812 -3.2635 0.5147 48 1 0.5231 -2.4028 0.5140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036777941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:24:38 Heat of formation + Delta-G solvation = 42.265232 kcal Electronic energy + Delta-G solvation = -28734.326112 eV Core-core repulsion = 24983.305761 eV Total energy + Delta-G solvation = -3751.020351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.09648 -39.59177 -38.14009 -35.36606 -34.83236 -32.72448 -32.51106 -31.67005 -29.55549 -28.75975 -28.13688 -27.33043 -24.96788 -23.80523 -23.13104 -22.64990 -21.70403 -20.13704 -19.75668 -19.08279 -17.51914 -16.80697 -16.51204 -15.80785 -15.52181 -15.31343 -14.96577 -14.86099 -14.66772 -14.32624 -13.83651 -13.54052 -13.42938 -13.29841 -13.18715 -13.14280 -12.99834 -12.80265 -12.44717 -12.31303 -12.05969 -11.85604 -11.57605 -11.45722 -11.31777 -10.78658 -10.75555 -10.56935 -10.24717 -10.08206 -10.00900 -9.82492 -9.75891 -9.72193 -9.56686 -9.20908 -8.82091 -8.57150 -8.40771 -6.77870 -5.69756 -3.01319 0.48584 0.92994 2.68013 3.03854 3.42114 3.47518 3.49101 3.60128 3.98797 4.31542 4.36969 4.52502 4.53449 4.55722 4.88471 5.05811 5.10514 5.13381 5.19095 5.26540 5.35374 5.40661 5.41662 5.49814 5.55200 5.58674 5.61667 5.69599 5.73590 5.84827 5.94987 5.98223 5.99123 6.19184 6.23679 6.30203 6.32358 6.41572 6.53696 6.59169 6.68039 6.72414 6.95888 7.14949 7.44570 7.57936 7.59675 7.65593 7.83817 8.22422 8.27908 9.22957 9.86727 10.55978 11.43680 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.002956 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.486840 B = 9469.001950 C =10234.257335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C 0.096 3.904 4 N -0.445 5.445 5 C 0.083 3.917 6 C 0.566 3.434 7 O -0.547 6.547 8 N -0.585 5.585 9 C 0.114 3.886 10 C -0.128 4.128 11 C 0.166 3.834 12 H 0.021 0.979 13 C -0.127 4.127 14 H 0.075 0.925 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.224 4.224 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.097 3.903 27 C -0.110 4.110 28 C -0.052 4.052 29 C -0.118 4.118 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.047 0.953 42 H 0.251 0.749 43 H 0.135 0.865 44 H 0.070 0.930 45 H 0.145 0.855 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 -11.143 -12.388 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.124 4.124 3 C -0.063 4.063 4 N -0.157 5.157 5 C -0.054 4.054 6 C 0.352 3.648 7 O -0.425 6.425 8 N -0.315 5.315 9 C -0.009 4.009 10 C -0.167 4.167 11 C 0.058 3.942 12 H 0.038 0.962 13 C -0.147 4.147 14 H 0.093 0.907 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.320 5.320 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.207 1.207 26 C -0.024 4.024 27 C -0.131 4.131 28 C -0.059 4.059 29 C -0.175 4.175 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.181 0.819 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.151 0.849 44 H 0.089 0.911 45 H 0.163 0.837 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.050 -10.729 -12.397 23.654 hybrid contribution 0.614 -0.438 0.555 0.936 sum -16.437 -11.167 -11.842 23.132 Atomic orbital electron populations 1.20822 0.89976 1.03537 1.02824 1.20987 0.97722 0.93592 1.00104 1.22867 0.89665 0.97781 0.95990 1.67727 1.08043 1.29028 1.10921 1.21154 0.94360 0.89623 1.00221 1.17929 0.85792 0.82701 0.78388 1.90752 1.66068 1.36827 1.48863 1.48492 1.07143 1.15099 1.60757 1.21701 0.78489 1.02524 0.98183 1.21889 1.00765 0.98672 0.95376 1.20677 0.91456 0.91555 0.90544 0.96182 1.22689 0.98361 0.98180 0.95515 0.90671 1.22683 0.99320 0.95653 0.99609 1.21530 0.82375 0.96216 0.94532 1.44247 1.07406 1.57184 1.23181 1.19019 0.87062 1.19482 1.09697 0.90412 1.24805 0.97547 0.99318 0.98763 1.69957 1.29334 1.32770 1.24743 0.86151 0.84080 0.77776 0.78113 1.21674 1.21851 1.20665 1.23028 0.98364 0.87120 0.93931 1.21943 0.94144 0.98874 0.98130 1.20185 0.93202 0.95868 0.96691 1.20881 1.00463 0.93039 1.03080 0.90572 0.90828 0.90810 0.81943 0.91746 0.89438 0.90558 0.91605 0.92284 0.92302 0.93970 0.93500 0.93836 0.84880 0.91149 0.83694 0.90306 0.90784 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.65 36.00 0.35 -0.21 16 2 C -0.12 -0.99 5.91 -104.36 -0.62 -1.61 16 3 C 0.10 0.91 10.86 -17.56 -0.19 0.72 16 4 N -0.45 -5.58 6.31 -9.80 -0.06 -5.64 16 5 C 0.08 1.15 6.43 -83.01 -0.53 0.62 16 6 C 0.57 9.30 7.59 -12.18 -0.09 9.20 16 7 O -0.55 -10.11 15.87 5.35 0.08 -10.02 16 8 N -0.58 -9.54 3.01 -172.48 -0.52 -10.06 16 9 C 0.11 1.86 6.33 -3.49 -0.02 1.84 16 10 C -0.13 -2.40 5.42 -26.98 -0.15 -2.54 16 11 C 0.17 3.46 2.57 -67.98 -0.17 3.28 16 12 H 0.02 0.44 7.93 -51.93 -0.41 0.03 16 13 C -0.13 -2.32 2.84 -89.37 -0.25 -2.57 16 14 H 0.07 1.48 8.12 -51.93 -0.42 1.06 16 15 C -0.13 -2.49 6.53 -25.13 -0.16 -2.65 16 16 C 0.18 4.32 5.44 -1.86 -0.01 4.31 16 17 N -0.60 -15.20 3.35 -163.01 -0.55 -15.75 16 18 C -0.22 -6.24 9.88 -15.06 -0.15 -6.39 16 19 H 0.08 2.09 7.14 -52.48 -0.37 1.72 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -27.21 10.49 55.49 0.58 -26.63 16 22 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.10 1.50 5.52 -3.09 -0.02 1.49 16 27 C -0.11 -1.28 9.33 -39.05 -0.36 -1.64 16 28 C -0.05 -0.46 5.91 -104.35 -0.62 -1.08 16 29 C -0.12 -0.68 9.67 36.00 0.35 -0.34 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.29 6.06 -51.93 -0.31 -0.02 16 32 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.43 6.95 -51.93 -0.36 1.07 16 36 H 0.08 1.44 7.60 -51.93 -0.39 1.04 16 37 H 0.07 1.31 8.12 -51.93 -0.42 0.88 16 38 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 1.13 7.58 -51.93 -0.39 0.73 16 41 H 0.05 1.26 7.47 -51.93 -0.39 0.87 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 1.94 4.07 -78.17 -0.32 1.62 16 44 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 45 H 0.15 1.62 7.80 -52.48 -0.41 1.21 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 48 H 0.08 0.33 6.07 -51.92 -0.32 0.02 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -33.02 371.52 -10.09 -43.11 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.45 Total: -0.02 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.75 Total: 2.11 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.55 Total: -58.08 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.02 -10.09 -43.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036777941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.376 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds